data_8G5D # _model_server_result.job_id 3vWPZ9ppdwDaHLwlpXByAg _model_server_result.datetime_utc '2025-07-31 02:16:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":3302}' # _entry.id 8G5D # _exptl.entry_id 8G5D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 131.064 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXALOACETATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G5D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C4 H3 O5 -1' _chem_comp.formula_weight 131.064 _chem_comp.id OAA _chem_comp.mon_nstd_flag . _chem_comp.name 'OXALOACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 OAA doub 372 n n O2 C1 OAA sing 373 n n O4 C4 OAA doub 374 n n O5 C4 OAA sing 375 n n O5 HO5 OAA sing 376 n n O3 C3 OAA doub 377 n n C1 C2 OAA sing 378 n n C2 C3 OAA sing 379 n n C2 H21 OAA sing 380 n n C2 H22 OAA sing 381 n n C3 C4 OAA sing 382 n n # _atom_sites.entry_id 8G5D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACO A 1 3301 3301 ACO ACO . F 3 OAA A 1 3302 3302 OAA OAA . G 2 ACO B 1 3301 3301 ACO ACO . H 3 OAA B 1 3302 3302 OAA OAA . I 2 ACO C 1 3301 3301 ACO ACO . J 3 OAA C 1 3302 3302 OAA OAA . K 2 ACO D 1 3301 3301 ACO ACO . L 3 OAA D 1 3302 3302 OAA OAA . M 4 Q5B D 1 3303 3303 Q5B Q5B . N 5 ADP D 1 3304 3304 ADP ADP . O 6 PO4 D 1 3305 3305 PO4 PO4 . P 7 HOH A 1 3401 3402 HOH HOH . P 7 HOH A 2 3402 3408 HOH HOH . P 7 HOH A 3 3403 3401 HOH HOH . P 7 HOH A 4 3404 3403 HOH HOH . P 7 HOH A 5 3405 3404 HOH HOH . P 7 HOH A 6 3406 3405 HOH HOH . P 7 HOH A 7 3407 3409 HOH HOH . P 7 HOH A 8 3408 3406 HOH HOH . P 7 HOH A 9 3409 3407 HOH HOH . Q 7 HOH B 1 3401 3401 HOH HOH . Q 7 HOH B 2 3402 3403 HOH HOH . Q 7 HOH B 3 3403 3407 HOH HOH . Q 7 HOH B 4 3404 3402 HOH HOH . Q 7 HOH B 5 3405 3406 HOH HOH . Q 7 HOH B 6 3406 3408 HOH HOH . Q 7 HOH B 7 3407 3405 HOH HOH . Q 7 HOH B 8 3408 3410 HOH HOH . Q 7 HOH B 9 3409 3409 HOH HOH . Q 7 HOH B 10 3410 3411 HOH HOH . Q 7 HOH B 11 3411 3404 HOH HOH . R 7 HOH C 1 3401 3401 HOH HOH . R 7 HOH C 2 3402 3404 HOH HOH . R 7 HOH C 3 3403 3403 HOH HOH . R 7 HOH C 4 3404 3406 HOH HOH . R 7 HOH C 5 3405 3402 HOH HOH . R 7 HOH C 6 3406 3405 HOH HOH . R 7 HOH C 7 3407 3407 HOH HOH . R 7 HOH C 8 3408 3408 HOH HOH . S 7 HOH D 1 3401 3402 HOH HOH . S 7 HOH D 2 3402 3401 HOH HOH . S 7 HOH D 3 3403 3404 HOH HOH . S 7 HOH D 4 3404 3403 HOH HOH . S 7 HOH D 5 3405 3405 HOH HOH . S 7 HOH D 6 3406 3407 HOH HOH . S 7 HOH D 7 3407 3409 HOH HOH . S 7 HOH D 8 3408 3406 HOH HOH . S 7 HOH D 9 3409 3408 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OAA . . . L 3 105.486 106.962 100.845 1 69.06 ? O1 OAA 3302 D 1 HETATM 2 O O2 OAA . . . L 3 107.282 107.009 102.084 1 69.06 ? O2 OAA 3302 D 1 HETATM 3 O O4 OAA . . . L 3 104.013 104.399 99.014 1 69.06 ? O4 OAA 3302 D 1 HETATM 4 O O5 OAA . . . L 3 103.7 103.209 100.811 1 69.06 ? O5 OAA 3302 D 1 HETATM 5 O O3 OAA . . . L 3 106.8 103.771 99.815 1 69.06 ? O3 OAA 3302 D 1 HETATM 6 C C1 OAA . . . L 3 106.333 106.367 101.562 1 69.06 ? C1 OAA 3302 D 1 HETATM 7 C C2 OAA . . . L 3 106.21 104.866 101.808 1 69.06 ? C2 OAA 3302 D 1 HETATM 8 C C3 OAA . . . L 3 105.907 104.143 100.499 1 69.06 ? C3 OAA 3302 D 1 HETATM 9 C C4 OAA . . . L 3 104.456 103.903 100.081 1 69.06 ? C4 OAA 3302 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #