data_8G63 # _model_server_result.job_id l_n4413BqnDnlc0B5IJREg _model_server_result.datetime_utc '2024-11-25 23:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8G63 # _exptl.entry_id 8G63 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.526 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ralimetinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G63 _cell.length_a 143.85 _cell.length_b 143.85 _cell.length_c 143.85 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H29 F N6' _chem_comp.formula_weight 420.526 _chem_comp.id YXT _chem_comp.mon_nstd_flag . _chem_comp.name ralimetinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (5P)-5-[2-tert-butyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]-3-(2,2-dimethylpropyl)-3H-imidazo[4,5-b]pyridin-2-amine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N31 C30 YXT sing 376 n n C03 C02 YXT sing 377 n n C01 C02 YXT sing 378 n n C02 C05 YXT sing 379 n n C02 C04 YXT sing 380 n n C30 N06 YXT sing 381 n y C30 N29 YXT doub 382 n y C05 N06 YXT sing 383 n n N06 C07 YXT sing 384 n y N29 C08 YXT sing 385 n y C07 C08 YXT doub 386 n y C07 N12 YXT sing 387 n y C08 C09 YXT sing 388 n y N12 C11 YXT doub 389 n y C09 C10 YXT doub 390 n y C11 C10 YXT sing 391 n y C11 C13 YXT sing 392 n n N17 C13 YXT sing 393 n y N17 C16 YXT sing 394 n y C13 C14 YXT doub 395 n y C21 C18 YXT sing 396 n n C19 C18 YXT sing 397 n n C16 C18 YXT sing 398 n n C16 N15 YXT doub 399 n y C18 C20 YXT sing 400 n n C14 N15 YXT sing 401 n y C14 C22 YXT sing 402 n n C27 C22 YXT doub 403 n y C27 C26 YXT sing 404 n y C22 C23 YXT sing 405 n y C26 C25 YXT doub 406 n y C23 C24 YXT doub 407 n y C25 C24 YXT sing 408 n y C25 F28 YXT sing 409 n n C10 H101 YXT sing 410 n n C20 H202 YXT sing 411 n n C20 H201 YXT sing 412 n n C20 H203 YXT sing 413 n n C21 H213 YXT sing 414 n n C21 H212 YXT sing 415 n n C21 H211 YXT sing 416 n n C24 H241 YXT sing 417 n n C26 H261 YXT sing 418 n n C01 H012 YXT sing 419 n n C01 H013 YXT sing 420 n n C01 H011 YXT sing 421 n n C03 H032 YXT sing 422 n n C03 H033 YXT sing 423 n n C03 H031 YXT sing 424 n n C04 H042 YXT sing 425 n n C04 H043 YXT sing 426 n n C04 H041 YXT sing 427 n n C05 H052 YXT sing 428 n n C05 H051 YXT sing 429 n n C09 H091 YXT sing 430 n n C19 H192 YXT sing 431 n n C19 H193 YXT sing 432 n n C19 H191 YXT sing 433 n n C23 H231 YXT sing 434 n n C27 H271 YXT sing 435 n n N17 H171 YXT sing 436 n n N31 H311 YXT sing 437 n n N31 H312 YXT sing 438 n n # _atom_sites.entry_id 8G63 _atom_sites.fract_transf_matrix[1][1] 0.006952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YXT A 1 1101 1101 YXT LIG . C 3 HOH A 1 1201 30 HOH HOH . C 3 HOH A 2 1202 26 HOH HOH . C 3 HOH A 3 1203 24 HOH HOH . C 3 HOH A 4 1204 3 HOH HOH . C 3 HOH A 5 1205 16 HOH HOH . C 3 HOH A 6 1206 2 HOH HOH . C 3 HOH A 7 1207 18 HOH HOH . C 3 HOH A 8 1208 11 HOH HOH . C 3 HOH A 9 1209 22 HOH HOH . C 3 HOH A 10 1210 20 HOH HOH . C 3 HOH A 11 1211 6 HOH HOH . C 3 HOH A 12 1212 1 HOH HOH . C 3 HOH A 13 1213 4 HOH HOH . C 3 HOH A 14 1214 17 HOH HOH . C 3 HOH A 15 1215 14 HOH HOH . C 3 HOH A 16 1216 9 HOH HOH . C 3 HOH A 17 1217 28 HOH HOH . C 3 HOH A 18 1218 15 HOH HOH . C 3 HOH A 19 1219 21 HOH HOH . C 3 HOH A 20 1220 8 HOH HOH . C 3 HOH A 21 1221 25 HOH HOH . C 3 HOH A 22 1222 29 HOH HOH . C 3 HOH A 23 1223 12 HOH HOH . C 3 HOH A 24 1224 23 HOH HOH . C 3 HOH A 25 1225 13 HOH HOH . C 3 HOH A 26 1226 27 HOH HOH . C 3 HOH A 27 1227 7 HOH HOH . C 3 HOH A 28 1228 5 HOH HOH . C 3 HOH A 29 1229 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 YXT . . . B 2 52.254 1.627 23.921 1 77.83 ? C10 YXT 1101 A 1 HETATM 2 N N12 YXT . . . B 2 50.525 1.062 22.416 1 73.53 ? N12 YXT 1101 A 1 HETATM 3 C C13 YXT . . . B 2 49.989 0.642 24.744 1 82.57 ? C13 YXT 1101 A 1 HETATM 4 C C20 YXT . . . B 2 47.239 -1.805 27.272 1 87.55 ? C20 YXT 1101 A 1 HETATM 5 C C21 YXT . . . B 2 47.776 -2.862 25.042 1 82.85 ? C21 YXT 1101 A 1 HETATM 6 C C22 YXT . . . B 2 50.402 2.187 26.858 1 79.44 ? C22 YXT 1101 A 1 HETATM 7 C C24 YXT . . . B 2 51.649 2.676 28.863 1 74.63 ? C24 YXT 1101 A 1 HETATM 8 C C26 YXT . . . B 2 50.988 4.448 27.363 1 75.81 ? C26 YXT 1101 A 1 HETATM 9 C C01 YXT . . . B 2 51.077 -1.072 18.976 1 72.43 ? C01 YXT 1101 A 1 HETATM 10 C C02 YXT . . . B 2 49.678 -0.515 19.257 1 75.2 ? C02 YXT 1101 A 1 HETATM 11 C C03 YXT . . . B 2 48.768 -0.801 18.062 1 74.68 ? C03 YXT 1101 A 1 HETATM 12 C C04 YXT . . . B 2 49.08 -1.223 20.474 1 77.01 ? C04 YXT 1101 A 1 HETATM 13 C C05 YXT . . . B 2 49.733 1.003 19.507 1 75.09 ? C05 YXT 1101 A 1 HETATM 14 C C07 YXT . . . B 2 51.288 1.469 21.373 1 72.8 ? C07 YXT 1101 A 1 HETATM 15 C C08 YXT . . . B 2 52.548 1.964 21.528 1 71.21 ? C08 YXT 1101 A 1 HETATM 16 C C09 YXT . . . B 2 53.073 2.053 22.861 1 74.79 ? C09 YXT 1101 A 1 HETATM 17 C C11 YXT . . . B 2 50.965 1.132 23.664 1 80.62 ? C11 YXT 1101 A 1 HETATM 18 C C14 YXT . . . B 2 49.741 1.096 26.023 1 81.26 ? C14 YXT 1101 A 1 HETATM 19 C C16 YXT . . . B 2 48.408 -0.529 25.593 1 81.28 ? C16 YXT 1101 A 1 HETATM 20 C C18 YXT . . . B 2 47.341 -1.587 25.761 1 83.97 ? C18 YXT 1101 A 1 HETATM 21 C C19 YXT . . . B 2 46.032 -1.095 25.155 1 89.54 ? C19 YXT 1101 A 1 HETATM 22 C C23 YXT . . . B 2 51.039 1.763 28.024 1 77.43 ? C23 YXT 1101 A 1 HETATM 23 C C25 YXT . . . B 2 51.624 4.02 28.532 1 75.82 ? C25 YXT 1101 A 1 HETATM 24 C C27 YXT . . . B 2 50.368 3.531 26.522 1 76.82 ? C27 YXT 1101 A 1 HETATM 25 C C30 YXT . . . B 2 52.057 1.959 19.396 1 72.37 ? C30 YXT 1101 A 1 HETATM 26 F F28 YXT . . . B 2 52.242 4.917 29.366 1 78.02 ? F28 YXT 1101 A 1 HETATM 27 N N06 YXT . . . B 2 51.003 1.462 20.058 1 74.56 ? N06 YXT 1101 A 1 HETATM 28 N N15 YXT . . . B 2 48.776 0.347 26.529 1 80.79 ? N15 YXT 1101 A 1 HETATM 29 N N17 YXT . . . B 2 49.151 -0.335 24.508 1 82.47 ? N17 YXT 1101 A 1 HETATM 30 N N29 YXT . . . B 2 53.023 2.267 20.283 1 68.68 ? N29 YXT 1101 A 1 HETATM 31 N N31 YXT . . . B 2 52.131 2.105 17.951 1 68.53 ? N31 YXT 1101 A 1 HETATM 32 H H101 YXT . . . B 2 52.62 1.679 24.941 1 93.52 ? H101 YXT 1101 A 1 HETATM 33 H H202 YXT . . . B 2 46.46 -2.532 27.481 1 105.19 ? H202 YXT 1101 A 1 HETATM 34 H H201 YXT . . . B 2 46.997 -0.864 27.757 1 105.19 ? H201 YXT 1101 A 1 HETATM 35 H H203 YXT . . . B 2 48.189 -2.173 27.649 1 105.19 ? H203 YXT 1101 A 1 HETATM 36 H H213 YXT . . . B 2 48.008 -2.633 24.006 1 99.55 ? H213 YXT 1101 A 1 HETATM 37 H H212 YXT . . . B 2 46.972 -3.592 25.08 1 99.55 ? H212 YXT 1101 A 1 HETATM 38 H H211 YXT . . . B 2 48.658 -3.27 25.529 1 99.55 ? H211 YXT 1101 A 1 HETATM 39 H H241 YXT . . . B 2 52.14 2.344 29.769 1 89.69 ? H241 YXT 1101 A 1 HETATM 40 H H261 YXT . . . B 2 50.979 5.501 27.111 1 91.1 ? H261 YXT 1101 A 1 HETATM 41 H H012 YXT . . . B 2 51.553 -0.48 18.199 1 87.05 ? H012 YXT 1101 A 1 HETATM 42 H H013 YXT . . . B 2 50.997 -2.104 18.646 1 87.05 ? H013 YXT 1101 A 1 HETATM 43 H H011 YXT . . . B 2 51.674 -1.026 19.882 1 87.05 ? H011 YXT 1101 A 1 HETATM 44 H H032 YXT . . . B 2 49.189 -0.347 17.17 1 89.75 ? H032 YXT 1101 A 1 HETATM 45 H H033 YXT . . . B 2 47.783 -0.384 18.25 1 89.75 ? H033 YXT 1101 A 1 HETATM 46 H H031 YXT . . . B 2 48.686 -1.874 17.919 1 89.75 ? H031 YXT 1101 A 1 HETATM 47 H H042 YXT . . . B 2 48.522 -2.097 20.147 1 92.54 ? H042 YXT 1101 A 1 HETATM 48 H H043 YXT . . . B 2 48.412 -0.543 20.997 1 92.54 ? H043 YXT 1101 A 1 HETATM 49 H H041 YXT . . . B 2 49.879 -1.533 21.143 1 92.54 ? H041 YXT 1101 A 1 HETATM 50 H H052 YXT . . . B 2 48.943 1.264 20.202 1 90.24 ? H052 YXT 1101 A 1 HETATM 51 H H051 YXT . . . B 2 49.564 1.512 18.565 1 90.24 ? H051 YXT 1101 A 1 HETATM 52 H H091 YXT . . . B 2 54.069 2.437 23.044 1 89.88 ? H091 YXT 1101 A 1 HETATM 53 H H192 YXT . . . B 2 46.234 -0.6 24.208 1 107.58 ? H192 YXT 1101 A 1 HETATM 54 H H193 YXT . . . B 2 45.559 -0.392 25.836 1 107.58 ? H193 YXT 1101 A 1 HETATM 55 H H191 YXT . . . B 2 45.369 -1.94 24.988 1 107.58 ? H191 YXT 1101 A 1 HETATM 56 H H231 YXT . . . B 2 51.056 0.71 28.274 1 93.05 ? H231 YXT 1101 A 1 HETATM 57 H H271 YXT . . . B 2 49.867 3.861 25.62 1 92.32 ? H271 YXT 1101 A 1 HETATM 58 H H171 YXT . . . B 2 49.081 -0.85 23.652 1 99.1 ? H171 YXT 1101 A 1 HETATM 59 H H311 YXT . . . B 2 51.386 1.768 17.372 1 82.37 ? H311 YXT 1101 A 1 HETATM 60 H H312 YXT . . . B 2 52.936 2.535 17.534 1 82.37 ? H312 YXT 1101 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 60 #