data_8G6C # _model_server_result.job_id p1PnjgaflKFBTmOsXi0rUQ _model_server_result.datetime_utc '2025-03-12 05:14:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 8G6C # _exptl.entry_id 8G6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8G6C _cell.length_a 117.522 _cell.length_b 117.522 _cell.length_c 72.073 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -24.024333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 189 A PRO 155 1_555 A N SNC 190 A SNC 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SNC 190 A SNC 156 1_555 A N SER 191 A SER 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C PRO 189 B PRO 155 1_555 B N SNC 190 B SNC 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C SNC 190 B SNC 156 1_555 B N SER 191 B SER 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 188 A CYS 154 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc2 A NE2 HIS 200 A HIS 166 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A OE2 GLU 242 A GLU 208 1_555 I MN MN . B MN 301 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 C MN MN . A MN 301 6_554 B OE2 GLU 242 B GLU 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc5 B SG CYS 188 B CYS 154 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B NE2 HIS 200 B HIS 166 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8G6C _atom_sites.fract_transf_matrix[1][1] 0.008509 _atom_sites.fract_transf_matrix[1][2] 0.004913 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 301 1 MN MN . D 3 EDO A 1 302 1 EDO EDO . E 3 EDO A 1 303 3 EDO EDO . F 3 EDO A 1 304 4 EDO EDO . G 3 EDO A 1 305 5 EDO EDO . H 3 EDO A 1 306 4 EDO EDO . I 2 MN B 1 301 1 MN MN . J 3 EDO B 1 302 2 EDO EDO . K 3 EDO B 1 303 1 EDO EDO . L 3 EDO B 1 304 2 EDO EDO . M 3 EDO B 1 305 3 EDO EDO . N 4 HOH A 1 401 36 HOH HOH . N 4 HOH A 2 402 12 HOH HOH . N 4 HOH A 3 403 30 HOH HOH . N 4 HOH A 4 404 33 HOH HOH . N 4 HOH A 5 405 1 HOH HOH . N 4 HOH A 6 406 11 HOH HOH . N 4 HOH A 7 407 31 HOH HOH . N 4 HOH A 8 408 9 HOH HOH . N 4 HOH A 9 409 38 HOH HOH . N 4 HOH A 10 410 10 HOH HOH . N 4 HOH A 11 411 34 HOH HOH . N 4 HOH A 12 412 29 HOH HOH . N 4 HOH A 13 413 20 HOH HOH . N 4 HOH A 14 414 21 HOH HOH . N 4 HOH A 15 415 18 HOH HOH . N 4 HOH A 16 416 17 HOH HOH . N 4 HOH A 17 417 2 HOH HOH . N 4 HOH A 18 418 15 HOH HOH . N 4 HOH A 19 419 14 HOH HOH . N 4 HOH A 20 420 23 HOH HOH . N 4 HOH A 21 421 35 HOH HOH . N 4 HOH A 22 422 32 HOH HOH . N 4 HOH A 23 423 28 HOH HOH . N 4 HOH A 24 424 26 HOH HOH . N 4 HOH A 25 425 8 HOH HOH . O 4 HOH B 1 401 13 HOH HOH . O 4 HOH B 2 402 3 HOH HOH . O 4 HOH B 3 403 25 HOH HOH . O 4 HOH B 4 404 7 HOH HOH . O 4 HOH B 5 405 37 HOH HOH . O 4 HOH B 6 406 6 HOH HOH . O 4 HOH B 7 407 24 HOH HOH . O 4 HOH B 8 408 5 HOH HOH . O 4 HOH B 9 409 19 HOH HOH . O 4 HOH B 10 410 4 HOH HOH . O 4 HOH B 11 411 22 HOH HOH . O 4 HOH B 12 412 27 HOH HOH . O 4 HOH B 13 413 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 50.623 -39.114 5.382 1 63.3 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . G 3 50.317 -40.465 5.749 1 63.99 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . G 3 49.53 -38.199 5.927 1 60.45 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . G 3 50.075 -37.291 6.891 1 64.34 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #