data_8G6Z
#
_model_server_result.job_id            SiwYq2T3BVdQnIMOHwdJ3w 
_model_server_result.datetime_utc      '2024-10-19 23:41:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g6z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1202}' 
#
_entry.id    8G6Z 
#
_exptl.entry_id    8G6Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.02 
_cell.angle_gamma         90 
_cell.entry_id            8G6Z 
_cell.length_a            98.09 
_cell.length_b            36.46 
_cell.length_c            183.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G6Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 192 A GLU 1006 1_555 A N PTR 193 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C PTR 193 A PTR 1007 1_555 A N TYR 194 A TYR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 B C GLU 192 B GLU 1006 1_555 B N PTR 193 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 B C PTR 193 B PTR 1007 1_555 B N TYR 194 B TYR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8G6Z 
_atom_sites.fract_transf_matrix[1][1]    0.010195 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000716 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027427 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YSI A 1 1201 1201 YSI 115 . 
D 2 YSI B 1 1201 1201 YSI 115 . 
E 3 EDO B 1 1202 1202 EDO EDO . 
F 4 HOH A 1 1301 213 HOH HOH . 
F 4 HOH A 2 1302 36 HOH HOH . 
F 4 HOH A 3 1303 215 HOH HOH . 
F 4 HOH A 4 1304 43 HOH HOH . 
F 4 HOH A 5 1305 69 HOH HOH . 
F 4 HOH A 6 1306 197 HOH HOH . 
F 4 HOH A 7 1307 59 HOH HOH . 
F 4 HOH A 8 1308 158 HOH HOH . 
F 4 HOH A 9 1309 93 HOH HOH . 
F 4 HOH A 10 1310 161 HOH HOH . 
F 4 HOH A 11 1311 192 HOH HOH . 
F 4 HOH A 12 1312 33 HOH HOH . 
F 4 HOH A 13 1313 116 HOH HOH . 
F 4 HOH A 14 1314 55 HOH HOH . 
F 4 HOH A 15 1315 113 HOH HOH . 
F 4 HOH A 16 1316 16 HOH HOH . 
F 4 HOH A 17 1317 24 HOH HOH . 
F 4 HOH A 18 1318 124 HOH HOH . 
F 4 HOH A 19 1319 30 HOH HOH . 
F 4 HOH A 20 1320 28 HOH HOH . 
F 4 HOH A 21 1321 104 HOH HOH . 
F 4 HOH A 22 1322 194 HOH HOH . 
F 4 HOH A 23 1323 196 HOH HOH . 
F 4 HOH A 24 1324 177 HOH HOH . 
F 4 HOH A 25 1325 141 HOH HOH . 
F 4 HOH A 26 1326 195 HOH HOH . 
F 4 HOH A 27 1327 51 HOH HOH . 
F 4 HOH A 28 1328 167 HOH HOH . 
F 4 HOH A 29 1329 11 HOH HOH . 
F 4 HOH A 30 1330 132 HOH HOH . 
F 4 HOH A 31 1331 109 HOH HOH . 
F 4 HOH A 32 1332 149 HOH HOH . 
F 4 HOH A 33 1333 78 HOH HOH . 
F 4 HOH A 34 1334 57 HOH HOH . 
F 4 HOH A 35 1335 144 HOH HOH . 
F 4 HOH A 36 1336 157 HOH HOH . 
F 4 HOH A 37 1337 211 HOH HOH . 
F 4 HOH A 38 1338 40 HOH HOH . 
F 4 HOH A 39 1339 84 HOH HOH . 
F 4 HOH A 40 1340 114 HOH HOH . 
F 4 HOH A 41 1341 27 HOH HOH . 
F 4 HOH A 42 1342 221 HOH HOH . 
F 4 HOH A 43 1343 39 HOH HOH . 
F 4 HOH A 44 1344 4 HOH HOH . 
F 4 HOH A 45 1345 53 HOH HOH . 
F 4 HOH A 46 1346 48 HOH HOH . 
F 4 HOH A 47 1347 75 HOH HOH . 
F 4 HOH A 48 1348 123 HOH HOH . 
F 4 HOH A 49 1349 112 HOH HOH . 
F 4 HOH A 50 1350 148 HOH HOH . 
F 4 HOH A 51 1351 111 HOH HOH . 
F 4 HOH A 52 1352 85 HOH HOH . 
F 4 HOH A 53 1353 9 HOH HOH . 
F 4 HOH A 54 1354 5 HOH HOH . 
F 4 HOH A 55 1355 117 HOH HOH . 
F 4 HOH A 56 1356 101 HOH HOH . 
F 4 HOH A 57 1357 217 HOH HOH . 
F 4 HOH A 58 1358 127 HOH HOH . 
F 4 HOH A 59 1359 49 HOH HOH . 
F 4 HOH A 60 1360 32 HOH HOH . 
F 4 HOH A 61 1361 121 HOH HOH . 
F 4 HOH A 62 1362 37 HOH HOH . 
F 4 HOH A 63 1363 82 HOH HOH . 
F 4 HOH A 64 1364 92 HOH HOH . 
F 4 HOH A 65 1365 151 HOH HOH . 
F 4 HOH A 66 1366 66 HOH HOH . 
F 4 HOH A 67 1367 126 HOH HOH . 
F 4 HOH A 68 1368 44 HOH HOH . 
F 4 HOH A 69 1369 71 HOH HOH . 
F 4 HOH A 70 1370 178 HOH HOH . 
F 4 HOH A 71 1371 214 HOH HOH . 
F 4 HOH A 72 1372 10 HOH HOH . 
F 4 HOH A 73 1373 165 HOH HOH . 
F 4 HOH A 74 1374 107 HOH HOH . 
F 4 HOH A 75 1375 12 HOH HOH . 
F 4 HOH A 76 1376 224 HOH HOH . 
F 4 HOH A 77 1377 2 HOH HOH . 
F 4 HOH A 78 1378 183 HOH HOH . 
F 4 HOH A 79 1379 129 HOH HOH . 
F 4 HOH A 80 1380 153 HOH HOH . 
F 4 HOH A 81 1381 164 HOH HOH . 
F 4 HOH A 82 1382 56 HOH HOH . 
F 4 HOH A 83 1383 98 HOH HOH . 
F 4 HOH A 84 1384 160 HOH HOH . 
F 4 HOH A 85 1385 6 HOH HOH . 
F 4 HOH A 86 1386 207 HOH HOH . 
F 4 HOH A 87 1387 188 HOH HOH . 
F 4 HOH A 88 1388 45 HOH HOH . 
F 4 HOH A 89 1389 38 HOH HOH . 
F 4 HOH A 90 1390 174 HOH HOH . 
F 4 HOH A 91 1391 156 HOH HOH . 
F 4 HOH A 92 1392 138 HOH HOH . 
F 4 HOH A 93 1393 222 HOH HOH . 
F 4 HOH A 94 1394 58 HOH HOH . 
F 4 HOH A 95 1395 74 HOH HOH . 
F 4 HOH A 96 1396 91 HOH HOH . 
F 4 HOH A 97 1397 133 HOH HOH . 
F 4 HOH A 98 1398 187 HOH HOH . 
F 4 HOH A 99 1399 185 HOH HOH . 
F 4 HOH A 100 1400 80 HOH HOH . 
G 4 HOH B 1 1301 223 HOH HOH . 
G 4 HOH B 2 1302 200 HOH HOH . 
G 4 HOH B 3 1303 79 HOH HOH . 
G 4 HOH B 4 1304 209 HOH HOH . 
G 4 HOH B 5 1305 139 HOH HOH . 
G 4 HOH B 6 1306 62 HOH HOH . 
G 4 HOH B 7 1307 41 HOH HOH . 
G 4 HOH B 8 1308 64 HOH HOH . 
G 4 HOH B 9 1309 63 HOH HOH . 
G 4 HOH B 10 1310 130 HOH HOH . 
G 4 HOH B 11 1311 17 HOH HOH . 
G 4 HOH B 12 1312 142 HOH HOH . 
G 4 HOH B 13 1313 50 HOH HOH . 
G 4 HOH B 14 1314 23 HOH HOH . 
G 4 HOH B 15 1315 122 HOH HOH . 
G 4 HOH B 16 1316 60 HOH HOH . 
G 4 HOH B 17 1317 193 HOH HOH . 
G 4 HOH B 18 1318 202 HOH HOH . 
G 4 HOH B 19 1319 26 HOH HOH . 
G 4 HOH B 20 1320 205 HOH HOH . 
G 4 HOH B 21 1321 166 HOH HOH . 
G 4 HOH B 22 1322 198 HOH HOH . 
G 4 HOH B 23 1323 159 HOH HOH . 
G 4 HOH B 24 1324 118 HOH HOH . 
G 4 HOH B 25 1325 77 HOH HOH . 
G 4 HOH B 26 1326 140 HOH HOH . 
G 4 HOH B 27 1327 120 HOH HOH . 
G 4 HOH B 28 1328 108 HOH HOH . 
G 4 HOH B 29 1329 61 HOH HOH . 
G 4 HOH B 30 1330 218 HOH HOH . 
G 4 HOH B 31 1331 22 HOH HOH . 
G 4 HOH B 32 1332 135 HOH HOH . 
G 4 HOH B 33 1333 106 HOH HOH . 
G 4 HOH B 34 1334 70 HOH HOH . 
G 4 HOH B 35 1335 86 HOH HOH . 
G 4 HOH B 36 1336 13 HOH HOH . 
G 4 HOH B 37 1337 15 HOH HOH . 
G 4 HOH B 38 1338 73 HOH HOH . 
G 4 HOH B 39 1339 172 HOH HOH . 
G 4 HOH B 40 1340 163 HOH HOH . 
G 4 HOH B 41 1341 203 HOH HOH . 
G 4 HOH B 42 1342 208 HOH HOH . 
G 4 HOH B 43 1343 179 HOH HOH . 
G 4 HOH B 44 1344 76 HOH HOH . 
G 4 HOH B 45 1345 212 HOH HOH . 
G 4 HOH B 46 1346 115 HOH HOH . 
G 4 HOH B 47 1347 47 HOH HOH . 
G 4 HOH B 48 1348 18 HOH HOH . 
G 4 HOH B 49 1349 181 HOH HOH . 
G 4 HOH B 50 1350 96 HOH HOH . 
G 4 HOH B 51 1351 99 HOH HOH . 
G 4 HOH B 52 1352 90 HOH HOH . 
G 4 HOH B 53 1353 128 HOH HOH . 
G 4 HOH B 54 1354 14 HOH HOH . 
G 4 HOH B 55 1355 134 HOH HOH . 
G 4 HOH B 56 1356 216 HOH HOH . 
G 4 HOH B 57 1357 155 HOH HOH . 
G 4 HOH B 58 1358 125 HOH HOH . 
G 4 HOH B 59 1359 20 HOH HOH . 
G 4 HOH B 60 1360 65 HOH HOH . 
G 4 HOH B 61 1361 119 HOH HOH . 
G 4 HOH B 62 1362 100 HOH HOH . 
G 4 HOH B 63 1363 34 HOH HOH . 
G 4 HOH B 64 1364 25 HOH HOH . 
G 4 HOH B 65 1365 97 HOH HOH . 
G 4 HOH B 66 1366 31 HOH HOH . 
G 4 HOH B 67 1367 162 HOH HOH . 
G 4 HOH B 68 1368 35 HOH HOH . 
G 4 HOH B 69 1369 201 HOH HOH . 
G 4 HOH B 70 1370 169 HOH HOH . 
G 4 HOH B 71 1371 105 HOH HOH . 
G 4 HOH B 72 1372 46 HOH HOH . 
G 4 HOH B 73 1373 136 HOH HOH . 
G 4 HOH B 74 1374 145 HOH HOH . 
G 4 HOH B 75 1375 89 HOH HOH . 
G 4 HOH B 76 1376 8 HOH HOH . 
G 4 HOH B 77 1377 189 HOH HOH . 
G 4 HOH B 78 1378 88 HOH HOH . 
G 4 HOH B 79 1379 210 HOH HOH . 
G 4 HOH B 80 1380 206 HOH HOH . 
G 4 HOH B 81 1381 150 HOH HOH . 
G 4 HOH B 82 1382 147 HOH HOH . 
G 4 HOH B 83 1383 110 HOH HOH . 
G 4 HOH B 84 1384 168 HOH HOH . 
G 4 HOH B 85 1385 7 HOH HOH . 
G 4 HOH B 86 1386 146 HOH HOH . 
G 4 HOH B 87 1387 152 HOH HOH . 
G 4 HOH B 88 1388 102 HOH HOH . 
G 4 HOH B 89 1389 182 HOH HOH . 
G 4 HOH B 90 1390 219 HOH HOH . 
G 4 HOH B 91 1391 52 HOH HOH . 
G 4 HOH B 92 1392 180 HOH HOH . 
G 4 HOH B 93 1393 19 HOH HOH . 
G 4 HOH B 94 1394 184 HOH HOH . 
G 4 HOH B 95 1395 67 HOH HOH . 
G 4 HOH B 96 1396 199 HOH HOH . 
G 4 HOH B 97 1397 131 HOH HOH . 
G 4 HOH B 98 1398 190 HOH HOH . 
G 4 HOH B 99 1399 137 HOH HOH . 
G 4 HOH B 100 1400 95 HOH HOH . 
G 4 HOH B 101 1401 154 HOH HOH . 
G 4 HOH B 102 1402 191 HOH HOH . 
G 4 HOH B 103 1403 173 HOH HOH . 
G 4 HOH B 104 1404 68 HOH HOH . 
G 4 HOH B 105 1405 83 HOH HOH . 
G 4 HOH B 106 1406 103 HOH HOH . 
G 4 HOH B 107 1407 204 HOH HOH . 
G 4 HOH B 108 1408 186 HOH HOH . 
G 4 HOH B 109 1409 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 -13.559 -16.169 69.631 1 51.38 ? C1 EDO 1202 B 1 
HETATM 2 O O1 EDO . . . E 3 -12.199 -16.359 69.963 1 52.27 ? O1 EDO 1202 B 1 
HETATM 3 C C2 EDO . . . E 3 -14.4 -17.369 69.882 1 51.28 ? C2 EDO 1202 B 1 
HETATM 4 O O2 EDO . . . E 3 -15.792 -17.092 69.738 1 58.03 ? O2 EDO 1202 B 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#