data_8G89 # _model_server_result.job_id NimLsuiaHVK-BGPCwYgUFw _model_server_result.datetime_utc '2025-01-10 21:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8G89 # _exptl.entry_id 8G89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G89 _cell.length_a 77.03 _cell.length_b 186.46 _cell.length_c 65.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 8G89 _atom_sites.fract_transf_matrix[1][1] 0.012982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 296 NAD NDP . D 3 YXW A 1 402 301 YXW PFE . E 2 NAD B 1 401 296 NAD NDP . F 4 HOH A 1 501 13 HOH HOH . F 4 HOH A 2 502 64 HOH HOH . F 4 HOH A 3 503 52 HOH HOH . F 4 HOH A 4 504 25 HOH HOH . F 4 HOH A 5 505 80 HOH HOH . F 4 HOH A 6 506 63 HOH HOH . F 4 HOH A 7 507 27 HOH HOH . F 4 HOH A 8 508 78 HOH HOH . F 4 HOH A 9 509 71 HOH HOH . F 4 HOH A 10 510 1 HOH HOH . F 4 HOH A 11 511 43 HOH HOH . F 4 HOH A 12 512 66 HOH HOH . F 4 HOH A 13 513 3 HOH HOH . F 4 HOH A 14 514 65 HOH HOH . F 4 HOH A 15 515 21 HOH HOH . F 4 HOH A 16 516 22 HOH HOH . F 4 HOH A 17 517 42 HOH HOH . F 4 HOH A 18 518 14 HOH HOH . F 4 HOH A 19 519 70 HOH HOH . F 4 HOH A 20 520 23 HOH HOH . F 4 HOH A 21 521 68 HOH HOH . F 4 HOH A 22 522 69 HOH HOH . F 4 HOH A 23 523 61 HOH HOH . F 4 HOH A 24 524 28 HOH HOH . F 4 HOH A 25 525 40 HOH HOH . F 4 HOH A 26 526 31 HOH HOH . F 4 HOH A 27 527 4 HOH HOH . F 4 HOH A 28 528 50 HOH HOH . F 4 HOH A 29 529 6 HOH HOH . F 4 HOH A 30 530 67 HOH HOH . F 4 HOH A 31 531 46 HOH HOH . F 4 HOH A 32 532 79 HOH HOH . F 4 HOH A 33 533 37 HOH HOH . F 4 HOH A 34 534 76 HOH HOH . F 4 HOH A 35 535 51 HOH HOH . F 4 HOH A 36 536 17 HOH HOH . F 4 HOH A 37 537 36 HOH HOH . F 4 HOH A 38 538 38 HOH HOH . F 4 HOH A 39 539 45 HOH HOH . F 4 HOH A 40 540 10 HOH HOH . F 4 HOH A 41 541 49 HOH HOH . F 4 HOH A 42 542 35 HOH HOH . G 4 HOH B 1 501 59 HOH HOH . G 4 HOH B 2 502 26 HOH HOH . G 4 HOH B 3 503 39 HOH HOH . G 4 HOH B 4 504 9 HOH HOH . G 4 HOH B 5 505 20 HOH HOH . G 4 HOH B 6 506 73 HOH HOH . G 4 HOH B 7 507 8 HOH HOH . G 4 HOH B 8 508 30 HOH HOH . G 4 HOH B 9 509 18 HOH HOH . G 4 HOH B 10 510 56 HOH HOH . G 4 HOH B 11 511 2 HOH HOH . G 4 HOH B 12 512 44 HOH HOH . G 4 HOH B 13 513 11 HOH HOH . G 4 HOH B 14 514 15 HOH HOH . G 4 HOH B 15 515 7 HOH HOH . G 4 HOH B 16 516 29 HOH HOH . G 4 HOH B 17 517 5 HOH HOH . G 4 HOH B 18 518 16 HOH HOH . G 4 HOH B 19 519 19 HOH HOH . G 4 HOH B 20 520 54 HOH HOH . G 4 HOH B 21 521 81 HOH HOH . G 4 HOH B 22 522 57 HOH HOH . G 4 HOH B 23 523 12 HOH HOH . G 4 HOH B 24 524 55 HOH HOH . G 4 HOH B 25 525 34 HOH HOH . G 4 HOH B 26 526 82 HOH HOH . G 4 HOH B 27 527 72 HOH HOH . G 4 HOH B 28 528 47 HOH HOH . G 4 HOH B 29 529 48 HOH HOH . G 4 HOH B 30 530 32 HOH HOH . G 4 HOH B 31 531 74 HOH HOH . G 4 HOH B 32 532 75 HOH HOH . G 4 HOH B 33 533 41 HOH HOH . G 4 HOH B 34 534 53 HOH HOH . G 4 HOH B 35 535 77 HOH HOH . G 4 HOH B 36 536 60 HOH HOH . G 4 HOH B 37 537 58 HOH HOH . G 4 HOH B 38 538 62 HOH HOH . G 4 HOH B 39 539 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 7.833 37.6 82.397 1 47.01 ? PA NAD 401 B 1 HETATM 2 O O1A NAD . . . E 2 6.696 36.883 83.004 1 46.88 ? O1A NAD 401 B 1 HETATM 3 O O2A NAD . . . E 2 7.598 38.633 81.357 1 47.97 ? O2A NAD 401 B 1 HETATM 4 O O5B NAD . . . E 2 8.73 38.197 83.57 1 45.93 ? O5B NAD 401 B 1 HETATM 5 C C5B NAD . . . E 2 10.095 38.595 83.312 1 44.22 ? C5B NAD 401 B 1 HETATM 6 C C4B NAD . . . E 2 10.489 39.529 84.426 1 42.6 ? C4B NAD 401 B 1 HETATM 7 O O4B NAD . . . E 2 11.849 39.979 84.228 1 42.44 ? O4B NAD 401 B 1 HETATM 8 C C3B NAD . . . E 2 9.633 40.794 84.533 1 41.87 ? C3B NAD 401 B 1 HETATM 9 O O3B NAD . . . E 2 9.155 41.025 85.853 1 41.86 ? O3B NAD 401 B 1 HETATM 10 C C2B NAD . . . E 2 10.567 41.911 84.088 1 41.82 ? C2B NAD 401 B 1 HETATM 11 O O2B NAD . . . E 2 10.33 43.191 84.712 1 41.8 ? O2B NAD 401 B 1 HETATM 12 C C1B NAD . . . E 2 11.911 41.359 84.531 1 41.74 ? C1B NAD 401 B 1 HETATM 13 N N9A NAD . . . E 2 13.036 41.951 83.826 1 41.09 ? N9A NAD 401 B 1 HETATM 14 C C8A NAD . . . E 2 13.119 42.245 82.489 1 40.73 ? C8A NAD 401 B 1 HETATM 15 N N7A NAD . . . E 2 14.186 42.93 82.157 1 40.73 ? N7A NAD 401 B 1 HETATM 16 C C5A NAD . . . E 2 14.856 43.098 83.36 1 40.64 ? C5A NAD 401 B 1 HETATM 17 C C6A NAD . . . E 2 16.035 43.788 83.705 1 39.92 ? C6A NAD 401 B 1 HETATM 18 N N6A NAD . . . E 2 16.764 44.493 82.84 1 39.16 ? N6A NAD 401 B 1 HETATM 19 N N1A NAD . . . E 2 16.395 43.801 85.008 1 40.55 ? N1A NAD 401 B 1 HETATM 20 C C2A NAD . . . E 2 15.621 43.175 85.898 1 40.66 ? C2A NAD 401 B 1 HETATM 21 N N3A NAD . . . E 2 14.491 42.495 85.693 1 40.92 ? N3A NAD 401 B 1 HETATM 22 C C4A NAD . . . E 2 14.157 42.497 84.398 1 40.96 ? C4A NAD 401 B 1 HETATM 23 O O3 NAD . . . E 2 8.813 36.506 81.764 1 46.91 ? O3 NAD 401 B 1 HETATM 24 P PN NAD . . . E 2 8.999 34.939 82.016 1 46.66 ? PN NAD 401 B 1 HETATM 25 O O1N NAD . . . E 2 8.839 34.656 83.46 1 47.14 ? O1N NAD 401 B 1 HETATM 26 O O2N NAD . . . E 2 8.179 34.202 81.021 1 46.93 ? O2N NAD 401 B 1 HETATM 27 O O5D NAD . . . E 2 10.541 34.772 81.66 1 45.88 ? O5D NAD 401 B 1 HETATM 28 C C5D NAD . . . E 2 11.537 34.563 82.679 1 45.37 ? C5D NAD 401 B 1 HETATM 29 C C4D NAD . . . E 2 12.723 33.859 82.066 1 45.19 ? C4D NAD 401 B 1 HETATM 30 O O4D NAD . . . E 2 12.316 32.586 81.511 1 45.2 ? O4D NAD 401 B 1 HETATM 31 C C3D NAD . . . E 2 13.439 34.609 80.936 1 45.05 ? C3D NAD 401 B 1 HETATM 32 O O3D NAD . . . E 2 14.852 34.447 81.036 1 45.1 ? O3D NAD 401 B 1 HETATM 33 C C2D NAD . . . E 2 12.885 33.933 79.683 1 44.63 ? C2D NAD 401 B 1 HETATM 34 O O2D NAD . . . E 2 13.747 34.063 78.561 1 44.46 ? O2D NAD 401 B 1 HETATM 35 C C1D NAD . . . E 2 12.771 32.496 80.172 1 45.05 ? C1D NAD 401 B 1 HETATM 36 N N1N NAD . . . E 2 11.839 31.665 79.412 1 45.33 ? N1N NAD 401 B 1 HETATM 37 C C2N NAD . . . E 2 10.525 32.064 79.209 1 45.82 ? C2N NAD 401 B 1 HETATM 38 C C3N NAD . . . E 2 9.664 31.343 78.458 1 46.35 ? C3N NAD 401 B 1 HETATM 39 C C7N NAD . . . E 2 8.249 31.743 78.29 1 47.05 ? C7N NAD 401 B 1 HETATM 40 O O7N NAD . . . E 2 7.574 31.26 77.367 1 47.31 ? O7N NAD 401 B 1 HETATM 41 N N7N NAD . . . E 2 7.775 32.72 79.062 1 47.2 ? N7N NAD 401 B 1 HETATM 42 C C4N NAD . . . E 2 10.143 30.161 77.665 1 46.12 ? C4N NAD 401 B 1 HETATM 43 C C5N NAD . . . E 2 11.45 29.661 78.206 1 45.77 ? C5N NAD 401 B 1 HETATM 44 C C6N NAD . . . E 2 12.251 30.461 78.908 1 45.38 ? C6N NAD 401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #