data_8G89 # _model_server_result.job_id 0dbnIqwEXDEV2ZGBPHE1Pw _model_server_result.datetime_utc '2025-01-10 20:49:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8G89 # _exptl.entry_id 8G89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.408 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-fluoro-N-({(1r,4r)-4-[(2-fluorophenoxy)methyl]-1-hydroxycyclohexyl}methyl)-4-hydroxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G89 _cell.length_a 77.03 _cell.length_b 186.46 _cell.length_c 65.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 F2 N O4' _chem_comp.formula_weight 391.408 _chem_comp.id YXW _chem_comp.mon_nstd_flag . _chem_comp.name 3-fluoro-N-({(1r,4r)-4-[(2-fluorophenoxy)methyl]-1-hydroxycyclohexyl}methyl)-4-hydroxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C25 YXW sing 451 n n F29 C24 YXW sing 452 n n C25 C24 YXW doub 453 n y C25 C26 YXW sing 454 n y C24 C23 YXW sing 455 n y C26 C27 YXW doub 456 n y C23 C22 YXW doub 457 n y C27 C22 YXW sing 458 n y C22 C20 YXW sing 459 n n O21 C20 YXW doub 460 n n C20 N19 YXW sing 461 n n N19 C18 YXW sing 462 n n C18 C14 YXW sing 463 n n O17 C14 YXW sing 464 n n C14 C15 YXW sing 465 n n C14 C13 YXW sing 466 n n C15 C16 YXW sing 467 n n C13 C12 YXW sing 468 n n C16 C10 YXW sing 469 n n C12 C10 YXW sing 470 n n C10 C9 YXW sing 471 n n C9 O8 YXW sing 472 n n O8 C3 YXW sing 473 n n C2 C3 YXW doub 474 n y C2 C1 YXW sing 475 n y C3 C4 YXW sing 476 n y C1 C6 YXW doub 477 n y C4 F7 YXW sing 478 n n C4 C5 YXW doub 479 n y C6 C5 YXW sing 480 n y C6 H33 YXW sing 481 n n C9 H35 YXW sing 482 n n C9 H34 YXW sing 483 n n C13 H39 YXW sing 484 n n C13 H38 YXW sing 485 n n C18 H45 YXW sing 486 n n C18 H46 YXW sing 487 n n C16 H43 YXW sing 488 n n C16 H42 YXW sing 489 n n O17 H44 YXW sing 490 n n C26 H49 YXW sing 491 n n C1 H30 YXW sing 492 n n C2 H31 YXW sing 493 n n C5 H32 YXW sing 494 n n C10 H11 YXW sing 495 n n C12 H36 YXW sing 496 n n C12 H37 YXW sing 497 n n C15 H41 YXW sing 498 n n C15 H40 YXW sing 499 n n N19 H47 YXW sing 500 n n C23 H48 YXW sing 501 n n C27 H50 YXW sing 502 n n O28 H51 YXW sing 503 n n # _atom_sites.entry_id 8G89 _atom_sites.fract_transf_matrix[1][1] 0.012982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 296 NAD NDP . D 3 YXW A 1 402 301 YXW PFE . E 2 NAD B 1 401 296 NAD NDP . F 4 HOH A 1 501 13 HOH HOH . F 4 HOH A 2 502 64 HOH HOH . F 4 HOH A 3 503 52 HOH HOH . F 4 HOH A 4 504 25 HOH HOH . F 4 HOH A 5 505 80 HOH HOH . F 4 HOH A 6 506 63 HOH HOH . F 4 HOH A 7 507 27 HOH HOH . F 4 HOH A 8 508 78 HOH HOH . F 4 HOH A 9 509 71 HOH HOH . F 4 HOH A 10 510 1 HOH HOH . F 4 HOH A 11 511 43 HOH HOH . F 4 HOH A 12 512 66 HOH HOH . F 4 HOH A 13 513 3 HOH HOH . F 4 HOH A 14 514 65 HOH HOH . F 4 HOH A 15 515 21 HOH HOH . F 4 HOH A 16 516 22 HOH HOH . F 4 HOH A 17 517 42 HOH HOH . F 4 HOH A 18 518 14 HOH HOH . F 4 HOH A 19 519 70 HOH HOH . F 4 HOH A 20 520 23 HOH HOH . F 4 HOH A 21 521 68 HOH HOH . F 4 HOH A 22 522 69 HOH HOH . F 4 HOH A 23 523 61 HOH HOH . F 4 HOH A 24 524 28 HOH HOH . F 4 HOH A 25 525 40 HOH HOH . F 4 HOH A 26 526 31 HOH HOH . F 4 HOH A 27 527 4 HOH HOH . F 4 HOH A 28 528 50 HOH HOH . F 4 HOH A 29 529 6 HOH HOH . F 4 HOH A 30 530 67 HOH HOH . F 4 HOH A 31 531 46 HOH HOH . F 4 HOH A 32 532 79 HOH HOH . F 4 HOH A 33 533 37 HOH HOH . F 4 HOH A 34 534 76 HOH HOH . F 4 HOH A 35 535 51 HOH HOH . F 4 HOH A 36 536 17 HOH HOH . F 4 HOH A 37 537 36 HOH HOH . F 4 HOH A 38 538 38 HOH HOH . F 4 HOH A 39 539 45 HOH HOH . F 4 HOH A 40 540 10 HOH HOH . F 4 HOH A 41 541 49 HOH HOH . F 4 HOH A 42 542 35 HOH HOH . G 4 HOH B 1 501 59 HOH HOH . G 4 HOH B 2 502 26 HOH HOH . G 4 HOH B 3 503 39 HOH HOH . G 4 HOH B 4 504 9 HOH HOH . G 4 HOH B 5 505 20 HOH HOH . G 4 HOH B 6 506 73 HOH HOH . G 4 HOH B 7 507 8 HOH HOH . G 4 HOH B 8 508 30 HOH HOH . G 4 HOH B 9 509 18 HOH HOH . G 4 HOH B 10 510 56 HOH HOH . G 4 HOH B 11 511 2 HOH HOH . G 4 HOH B 12 512 44 HOH HOH . G 4 HOH B 13 513 11 HOH HOH . G 4 HOH B 14 514 15 HOH HOH . G 4 HOH B 15 515 7 HOH HOH . G 4 HOH B 16 516 29 HOH HOH . G 4 HOH B 17 517 5 HOH HOH . G 4 HOH B 18 518 16 HOH HOH . G 4 HOH B 19 519 19 HOH HOH . G 4 HOH B 20 520 54 HOH HOH . G 4 HOH B 21 521 81 HOH HOH . G 4 HOH B 22 522 57 HOH HOH . G 4 HOH B 23 523 12 HOH HOH . G 4 HOH B 24 524 55 HOH HOH . G 4 HOH B 25 525 34 HOH HOH . G 4 HOH B 26 526 82 HOH HOH . G 4 HOH B 27 527 72 HOH HOH . G 4 HOH B 28 528 47 HOH HOH . G 4 HOH B 29 529 48 HOH HOH . G 4 HOH B 30 530 32 HOH HOH . G 4 HOH B 31 531 74 HOH HOH . G 4 HOH B 32 532 75 HOH HOH . G 4 HOH B 33 533 41 HOH HOH . G 4 HOH B 34 534 53 HOH HOH . G 4 HOH B 35 535 77 HOH HOH . G 4 HOH B 36 536 60 HOH HOH . G 4 HOH B 37 537 58 HOH HOH . G 4 HOH B 38 538 62 HOH HOH . G 4 HOH B 39 539 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 YXW . . . D 3 43.6 22.697 82.512 1 82.16 ? C4 YXW 402 A 1 HETATM 2 C C6 YXW . . . D 3 42.264 20.791 82.968 1 82.12 ? C6 YXW 402 A 1 HETATM 3 C C9 YXW . . . D 3 42.479 24.641 79.627 1 79.9 ? C9 YXW 402 A 1 HETATM 4 C C13 YXW . . . D 3 45.321 25.934 77.329 1 77.68 ? C13 YXW 402 A 1 HETATM 5 C C20 YXW . . . D 3 42.421 25.48 73.331 1 73.27 ? C20 YXW 402 A 1 HETATM 6 C C18 YXW . . . D 3 44.026 25.701 75.17 1 75.81 ? C18 YXW 402 A 1 HETATM 7 C C16 YXW . . . D 3 42.469 26.42 77.887 1 77.75 ? C16 YXW 402 A 1 HETATM 8 O O17 YXW . . . D 3 45.312 27.649 75.701 1 77 ? O17 YXW 402 A 1 HETATM 9 C C26 YXW . . . D 3 40.18 27.933 71.429 1 70.81 ? C26 YXW 402 A 1 HETATM 10 C C1 YXW . . . D 3 41.517 21.05 81.838 1 81.9 ? C1 YXW 402 A 1 HETATM 11 C C2 YXW . . . D 3 41.807 22.143 81.038 1 81.64 ? C2 YXW 402 A 1 HETATM 12 C C3 YXW . . . D 3 42.859 22.985 81.382 1 81.49 ? C3 YXW 402 A 1 HETATM 13 C C5 YXW . . . D 3 43.319 21.617 83.315 1 82.2 ? C5 YXW 402 A 1 HETATM 14 F F7 YXW . . . D 3 44.636 23.51 82.825 1 82.62 ? F7 YXW 402 A 1 HETATM 15 O O8 YXW . . . D 3 43.239 24.138 80.737 1 80.66 ? O8 YXW 402 A 1 HETATM 16 C C10 YXW . . . D 3 43.32 25.675 78.914 1 78.76 ? C10 YXW 402 A 1 HETATM 17 C C12 YXW . . . D 3 44.518 24.995 78.236 1 78.37 ? C12 YXW 402 A 1 HETATM 18 C C14 YXW . . . D 3 44.45 26.655 76.3 1 76.95 ? C14 YXW 402 A 1 HETATM 19 C C15 YXW . . . D 3 43.313 27.369 77.035 1 77.29 ? C15 YXW 402 A 1 HETATM 20 N N19 YXW . . . D 3 43.084 26.249 74.204 1 74.54 ? N19 YXW 402 A 1 HETATM 21 O O21 YXW . . . D 3 42.657 24.283 73.212 1 73.35 ? O21 YXW 402 A 1 HETATM 22 C C22 YXW . . . D 3 41.339 26.113 72.511 1 72.36 ? C22 YXW 402 A 1 HETATM 23 C C23 YXW . . . D 3 40.406 25.225 71.983 1 71.72 ? C23 YXW 402 A 1 HETATM 24 C C24 YXW . . . D 3 39.403 25.713 71.189 1 70.84 ? C24 YXW 402 A 1 HETATM 25 C C25 YXW . . . D 3 39.247 27.049 70.901 1 70.49 ? C25 YXW 402 A 1 HETATM 26 C C27 YXW . . . D 3 41.215 27.472 72.222 1 71.69 ? C27 YXW 402 A 1 HETATM 27 O O28 YXW . . . D 3 38.225 27.507 70.135 1 70.19 ? O28 YXW 402 A 1 HETATM 28 F F29 YXW . . . D 3 38.543 24.838 70.625 1 70.62 ? F29 YXW 402 A 1 HETATM 29 H H33 YXW . . . D 3 42.023 19.933 83.594 0 96.91 ? H33 YXW 402 A 1 HETATM 30 H H35 YXW . . . D 3 42.21 23.847 78.931 0 84.35 ? H35 YXW 402 A 1 HETATM 31 H H34 YXW . . . D 3 41.547 25.076 79.985 0 82.83 ? H34 YXW 402 A 1 HETATM 32 H H39 YXW . . . D 3 45.837 26.664 77.952 0 81.89 ? H39 YXW 402 A 1 HETATM 33 H H38 YXW . . . D 3 46.135 25.383 76.861 0 83.08 ? H38 YXW 402 A 1 HETATM 34 H H45 YXW . . . D 3 44.929 25.368 74.659 0 78.25 ? H45 YXW 402 A 1 HETATM 35 H H46 YXW . . . D 3 43.599 24.782 75.564 0 78.1 ? H46 YXW 402 A 1 HETATM 36 H H43 YXW . . . D 3 41.903 25.722 77.271 0 78.16 ? H43 YXW 402 A 1 HETATM 37 H H42 YXW . . . D 3 41.702 27.001 78.396 0 77.21 ? H42 YXW 402 A 1 HETATM 38 H H44 YXW . . . D 3 45.605 28.312 76.382 0 78 ? H44 YXW 402 A 1 HETATM 39 H H49 YXW . . . D 3 40.089 28.996 71.212 0 62.75 ? H49 YXW 402 A 1 HETATM 40 H H30 YXW . . . D 3 40.691 20.395 81.568 0 92.73 ? H30 YXW 402 A 1 HETATM 41 H H31 YXW . . . D 3 41.187 22.282 80.154 0 88.52 ? H31 YXW 402 A 1 HETATM 42 H H32 YXW . . . D 3 43.916 21.417 84.203 0 97.03 ? H32 YXW 402 A 1 HETATM 43 H H11 YXW . . . D 3 43.694 26.389 79.646 0 81.95 ? H11 YXW 402 A 1 HETATM 44 H H36 YXW . . . D 3 45.202 24.616 78.994 0 85.16 ? H36 YXW 402 A 1 HETATM 45 H H37 YXW . . . D 3 44.204 24.099 77.702 0 83.69 ? H37 YXW 402 A 1 HETATM 46 H H41 YXW . . . D 3 42.68 27.906 76.331 0 75.31 ? H41 YXW 402 A 1 HETATM 47 H H40 YXW . . . D 3 43.721 28.151 77.673 0 77.08 ? H40 YXW 402 A 1 HETATM 48 H H47 YXW . . . D 3 42.984 27.258 74.199 0 72.29 ? H47 YXW 402 A 1 HETATM 49 H H48 YXW . . . D 3 40.454 24.16 72.205 0 69.93 ? H48 YXW 402 A 1 HETATM 50 H H50 YXW . . . D 3 41.929 28.194 72.614 0 66.61 ? H50 YXW 402 A 1 HETATM 51 H H51 YXW . . . D 3 38.591 28.169 69.492 0 61.2 ? H51 YXW 402 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 1174 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 51 #