data_8G8A # _model_server_result.job_id Qyc3V0QMzT_3dlAb5ZRwmw _model_server_result.datetime_utc '2024-10-11 05:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 8G8A # _exptl.entry_id 8G8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.06 _cell.angle_gamma 90 _cell.entry_id 8G8A _cell.length_a 164.976 _cell.length_b 63.84 _cell.length_c 111.971 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,M,N 1 1 C,D,F,H,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 149 A CYS 140 1_555 A SG CYS 205 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 136 B CYS 134 1_555 B SG CYS 196 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf6 C SG CYS 149 H CYS 140 1_555 C SG CYS 205 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 D SG CYS 136 L CYS 134 1_555 D SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 C ND2 ASN 77 H ASN 76 1_555 H C1 NAG . H NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? metalc ? metalc1 C O TYR 107 H TYR 100 1_555 I NA NA . L NA 301 1_555 C ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc2 D OH TYR 36 L TYR 36 1_555 I NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc3 D O PRO 80 L PRO 80 1_555 K NA NA . L NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc4 D OE1 GLN 89 L GLN 89 1_555 I NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc5 D O ASP 169 L ASP 167 1_555 K NA NA . L NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc6 D OG SER 173 L SER 171 1_555 K NA NA . L NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc7 D O THR 174 L THR 172 1_555 J NA NA . L NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc8 D OG1 THR 182 L THR 180 1_555 L NA NA . L NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8G8A _atom_sites.fract_transf_matrix[1][1] 0.006061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001185 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 301 215 NAG NAG . H 4 NAG H 1 301 217 NAG NAG . I 5 NA L 1 301 1 NA NA . J 5 NA L 1 302 2 NA NA . K 5 NA L 1 303 3 NA NA . L 5 NA L 1 304 5 NA NA . M 6 HOH A 1 401 33 HOH HOH . M 6 HOH A 2 402 13 HOH HOH . M 6 HOH A 3 403 21 HOH HOH . M 6 HOH A 4 404 40 HOH HOH . M 6 HOH A 5 405 32 HOH HOH . M 6 HOH A 6 406 34 HOH HOH . M 6 HOH A 7 407 27 HOH HOH . N 6 HOH B 1 301 20 HOH HOH . N 6 HOH B 2 302 30 HOH HOH . N 6 HOH B 3 303 1 HOH HOH . O 6 HOH H 1 401 36 HOH HOH . O 6 HOH H 2 402 3 HOH HOH . O 6 HOH H 3 403 23 HOH HOH . O 6 HOH H 4 404 43 HOH HOH . O 6 HOH H 5 405 2 HOH HOH . O 6 HOH H 6 406 38 HOH HOH . O 6 HOH H 7 407 17 HOH HOH . O 6 HOH H 8 408 10 HOH HOH . O 6 HOH H 9 409 12 HOH HOH . O 6 HOH H 10 410 29 HOH HOH . O 6 HOH H 11 411 7 HOH HOH . O 6 HOH H 12 412 42 HOH HOH . P 6 HOH L 1 401 19 HOH HOH . P 6 HOH L 2 402 24 HOH HOH . P 6 HOH L 3 403 37 HOH HOH . P 6 HOH L 4 404 41 HOH HOH . P 6 HOH L 5 405 28 HOH HOH . P 6 HOH L 6 406 8 HOH HOH . P 6 HOH L 7 407 18 HOH HOH . P 6 HOH L 8 408 26 HOH HOH . P 6 HOH L 9 409 31 HOH HOH . P 6 HOH L 10 410 25 HOH HOH . P 6 HOH L 11 411 15 HOH HOH . P 6 HOH L 12 412 16 HOH HOH . P 6 HOH L 13 413 4 HOH HOH . P 6 HOH L 14 414 22 HOH HOH . P 6 HOH L 15 415 14 HOH HOH . P 6 HOH L 16 416 6 HOH HOH . P 6 HOH L 17 417 11 HOH HOH . P 6 HOH L 18 418 35 HOH HOH . P 6 HOH L 19 419 9 HOH HOH . P 6 HOH L 20 420 5 HOH HOH . P 6 HOH L 21 421 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 8.777 34.688 21.037 1 111.91 ? C1 NAG 301 H 1 HETATM 2 C C2 NAG . . . H 4 9.83 35.232 22.007 1 108.57 ? C2 NAG 301 H 1 HETATM 3 C C3 NAG . . . H 4 9.178 35.68 23.32 1 105.3 ? C3 NAG 301 H 1 HETATM 4 C C4 NAG . . . H 4 7.975 36.582 23.06 1 106.58 ? C4 NAG 301 H 1 HETATM 5 C C5 NAG . . . H 4 7.053 35.904 22.06 1 109.71 ? C5 NAG 301 H 1 HETATM 6 C C6 NAG . . . H 4 5.818 36.74 21.78 1 108.23 ? C6 NAG 301 H 1 HETATM 7 C C7 NAG . . . H 4 11.99 34.139 21.596 1 105.32 ? C7 NAG 301 H 1 HETATM 8 C C8 NAG . . . H 4 12.857 32.952 21.903 1 100.42 ? C8 NAG 301 H 1 HETATM 9 N N2 NAG . . . H 4 10.848 34.233 22.286 1 106.98 ? N2 NAG 301 H 1 HETATM 10 O O3 NAG . . . H 4 10.164 36.337 24.125 1 102.06 ? O3 NAG 301 H 1 HETATM 11 O O4 NAG . . . H 4 7.174 36.753 24.236 1 102.28 ? O4 NAG 301 H 1 HETATM 12 O O5 NAG . . . H 4 7.754 35.655 20.85 1 114.06 ? O5 NAG 301 H 1 HETATM 13 O O6 NAG . . . H 4 6.244 37.925 21.121 1 108.19 ? O6 NAG 301 H 1 HETATM 14 O O7 NAG . . . H 4 12.322 34.97 20.761 1 105.69 ? O7 NAG 301 H 1 HETATM 15 H H2 NAG . . . H 4 10.255 36.009 21.598 1 131.24 ? H2 NAG 301 H 1 HETATM 16 H H3 NAG . . . H 4 8.87 34.886 23.797 1 127.32 ? H3 NAG 301 H 1 HETATM 17 H H4 NAG . . . H 4 8.267 37.449 22.719 1 128.86 ? H4 NAG 301 H 1 HETATM 18 H H5 NAG . . . H 4 6.768 35.049 22.434 1 132.61 ? H5 NAG 301 H 1 HETATM 19 H H61 NAG . . . H 4 5.372 36.968 22.617 1 130.84 ? H61 NAG 301 H 1 HETATM 20 H H62 NAG . . . H 4 5.206 36.243 21.204 1 130.84 ? H62 NAG 301 H 1 HETATM 21 H H81 NAG . . . H 4 13.699 33.293 22.259 1 121.47 ? H81 NAG 301 H 1 HETATM 22 H H82 NAG . . . H 4 12.968 32.451 21.078 1 121.47 ? H82 NAG 301 H 1 HETATM 23 H H83 NAG . . . H 4 12.421 32.391 22.572 1 121.47 ? H83 NAG 301 H 1 HETATM 24 H HN2 NAG . . . H 4 10.633 33.551 22.852 1 129.34 ? HN2 NAG 301 H 1 HETATM 25 H HO3 NAG . . . H 4 9.795 36.602 24.888 1 123.43 ? HO3 NAG 301 H 1 HETATM 26 H HO4 NAG . . . H 4 6.901 37.596 24.289 1 123.7 ? HO4 NAG 301 H 1 HETATM 27 H HO6 NAG . . . H 4 6.947 37.743 20.61 1 130.79 ? HO6 NAG 301 H 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 27 #