data_8G8F # _model_server_result.job_id V-BJmXUPUvzf1ZSlPAq-Rw _model_server_result.datetime_utc '2025-08-31 06:42:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":602}' # _entry.id 8G8F # _exptl.entry_id 8G8F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G8F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 M N N ? 2 N N N ? 2 Q N N ? 2 R N N ? 2 U N N ? 2 V N N ? 2 Y N N ? 2 Z N N ? 2 CA N N ? 2 DA N N ? 2 GA N N ? 2 HA N N ? 2 KA N N ? 2 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 336 A CYS 331 1_555 K C2 IMP . A IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? covale ? covale2 B SG CYS 336 B CYS 331 1_555 O C2 IMP . B IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale3 C SG CYS 336 C CYS 331 1_555 S C2 IMP . C IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale4 D SG CYS 336 D CYS 331 1_555 W C2 IMP . D IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 E CB CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale6 E SG CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? covale ? covale7 F SG CYS 336 F CYS 331 1_555 EA C2 IMP . F IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale8 G SG CYS 336 G CYS 331 1_555 IA C2 IMP . G IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale9 H SG CYS 336 H CYS 331 1_555 MA C2 IMP . H IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8G8F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 ATP A 1 601 601 ATP ATP . J 2 ATP A 1 602 602 ATP ATP . K 3 IMP A 1 603 603 IMP IMP . L 4 NAD A 1 604 604 NAD NAD . M 2 ATP B 1 601 601 ATP ATP . N 2 ATP B 1 602 602 ATP ATP . O 3 IMP B 1 603 603 IMP IMP . P 4 NAD B 1 604 604 NAD NAD . Q 2 ATP C 1 601 601 ATP ATP . R 2 ATP C 1 602 602 ATP ATP . S 3 IMP C 1 603 603 IMP IMP . T 4 NAD C 1 604 604 NAD NAD . U 2 ATP D 1 601 601 ATP ATP . V 2 ATP D 1 602 602 ATP ATP . W 3 IMP D 1 603 603 IMP IMP . X 4 NAD D 1 604 604 NAD NAD . Y 2 ATP E 1 601 601 ATP ATP . Z 2 ATP E 1 602 602 ATP ATP . AA 3 IMP E 1 603 603 IMP IMP . BA 4 NAD E 1 604 604 NAD NAD . CA 2 ATP F 1 601 601 ATP ATP . DA 2 ATP F 1 602 602 ATP ATP . EA 3 IMP F 1 603 603 IMP IMP . FA 4 NAD F 1 604 604 NAD NAD . GA 2 ATP G 1 601 601 ATP ATP . HA 2 ATP G 1 602 602 ATP ATP . IA 3 IMP G 1 603 603 IMP IMP . JA 4 NAD G 1 604 604 NAD NAD . KA 2 ATP H 1 601 601 ATP ATP . LA 2 ATP H 1 602 602 ATP ATP . MA 3 IMP H 1 603 603 IMP IMP . NA 4 NAD H 1 604 604 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . HA 2 162.723 118.957 169.916 1 109.75 ? PG ATP 602 G 1 HETATM 2 O O1G ATP . . . HA 2 161.565 119.92 170.024 1 104.37 ? O1G ATP 602 G 1 HETATM 3 O O2G ATP . . . HA 2 162.894 118.338 168.55 1 102 ? O2G ATP 602 G 1 HETATM 4 O O3G ATP . . . HA 2 164.005 119.453 170.541 1 101.84 ? O3G ATP 602 G 1 HETATM 5 P PB ATP . . . HA 2 162.036 117.934 172.426 1 104.62 ? PB ATP 602 G 1 HETATM 6 O O1B ATP . . . HA 2 161.567 119.354 172.641 1 100.86 ? O1B ATP 602 G 1 HETATM 7 O O2B ATP . . . HA 2 161.202 116.781 172.932 1 101.46 ? O2B ATP 602 G 1 HETATM 8 O O3B ATP . . . HA 2 162.289 117.72 170.851 1 102.89 ? O3B ATP 602 G 1 HETATM 9 P PA ATP . . . HA 2 163.992 118.74 174.256 1 108.66 ? PA ATP 602 G 1 HETATM 10 O O1A ATP . . . HA 2 164.15 120.144 173.723 1 102.19 ? O1A ATP 602 G 1 HETATM 11 O O2A ATP . . . HA 2 165.147 118.066 174.957 1 102.88 ? O2A ATP 602 G 1 HETATM 12 O O3A ATP . . . HA 2 163.516 117.793 173.044 1 104.69 ? O3A ATP 602 G 1 HETATM 13 O O5' ATP . . . HA 2 162.722 118.715 175.244 1 99.49 ? O5' ATP 602 G 1 HETATM 14 C C5' ATP . . . HA 2 162.906 118.733 176.658 1 100.34 ? C5' ATP 602 G 1 HETATM 15 C C4' ATP . . . HA 2 162.276 119.994 177.235 1 101.53 ? C4' ATP 602 G 1 HETATM 16 O O4' ATP . . . HA 2 160.988 120.196 176.649 1 103.1 ? O4' ATP 602 G 1 HETATM 17 C C3' ATP . . . HA 2 162.09 119.878 178.741 1 102.48 ? C3' ATP 602 G 1 HETATM 18 O O3' ATP . . . HA 2 162.854 120.893 179.406 1 100.95 ? O3' ATP 602 G 1 HETATM 19 C C2' ATP . . . HA 2 160.593 120.006 178.992 1 102.04 ? C2' ATP 602 G 1 HETATM 20 O O2' ATP . . . HA 2 160.258 121.17 179.759 1 100.62 ? O2' ATP 602 G 1 HETATM 21 C C1' ATP . . . HA 2 159.944 120.095 177.62 1 101.71 ? C1' ATP 602 G 1 HETATM 22 N N9 ATP . . . HA 2 159.149 118.867 177.367 1 102.91 ? N9 ATP 602 G 1 HETATM 23 C C8 ATP . . . HA 2 159.405 117.947 176.418 1 100.83 ? C8 ATP 602 G 1 HETATM 24 N N7 ATP . . . HA 2 158.491 116.943 176.45 1 97.95 ? N7 ATP 602 G 1 HETATM 25 C C5 ATP . . . HA 2 157.623 117.218 177.441 1 102.24 ? C5 ATP 602 G 1 HETATM 26 C C6 ATP . . . HA 2 156.418 116.575 178.014 1 103.66 ? C6 ATP 602 G 1 HETATM 27 N N6 ATP . . . HA 2 155.946 115.405 177.52 1 101.96 ? N6 ATP 602 G 1 HETATM 28 N N1 ATP . . . HA 2 155.805 117.194 179.048 1 105.03 ? N1 ATP 602 G 1 HETATM 29 C C2 ATP . . . HA 2 156.264 118.357 179.548 1 102.84 ? C2 ATP 602 G 1 HETATM 30 N N3 ATP . . . HA 2 157.35 118.996 179.077 1 103.59 ? N3 ATP 602 G 1 HETATM 31 C C4 ATP . . . HA 2 158.061 118.487 178.043 1 104.13 ? C4 ATP 602 G 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #