data_8G8F
#
_model_server_result.job_id            M2Z2Zkq8lbqxXVwLvcFkOQ 
_model_server_result.datetime_utc      '2025-08-31 06:42:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":602}' 
#
_entry.id    8G8F 
#
_exptl.entry_id    8G8F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8G8F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 M N N 
? 2 N N N 
? 2 Q N N 
? 2 R N N 
? 2 U N N 
? 2 V N N 
? 2 Y N N 
? 2 Z N N 
? 2 CA N N 
? 2 DA N N 
? 2 GA N N 
? 2 HA N N 
? 2 KA N N 
? 2 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 336 A CYS 331 1_555 K C2 IMP . A IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
covale ? covale2 B SG CYS 336 B CYS 331 1_555 O C2 IMP . B IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale3 C SG CYS 336 C CYS 331 1_555 S C2 IMP . C IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale4 D SG CYS 336 D CYS 331 1_555 W C2 IMP . D IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale5 E CB CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
covale ? covale6 E SG CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
covale ? covale7 F SG CYS 336 F CYS 331 1_555 EA C2 IMP . F IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale8 G SG CYS 336 G CYS 331 1_555 IA C2 IMP . G IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale9 H SG CYS 336 H CYS 331 1_555 MA C2 IMP . H IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8G8F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 601 601 ATP ATP . 
J 2 ATP A 1 602 602 ATP ATP . 
K 3 IMP A 1 603 603 IMP IMP . 
L 4 NAD A 1 604 604 NAD NAD . 
M 2 ATP B 1 601 601 ATP ATP . 
N 2 ATP B 1 602 602 ATP ATP . 
O 3 IMP B 1 603 603 IMP IMP . 
P 4 NAD B 1 604 604 NAD NAD . 
Q 2 ATP C 1 601 601 ATP ATP . 
R 2 ATP C 1 602 602 ATP ATP . 
S 3 IMP C 1 603 603 IMP IMP . 
T 4 NAD C 1 604 604 NAD NAD . 
U 2 ATP D 1 601 601 ATP ATP . 
V 2 ATP D 1 602 602 ATP ATP . 
W 3 IMP D 1 603 603 IMP IMP . 
X 4 NAD D 1 604 604 NAD NAD . 
Y 2 ATP E 1 601 601 ATP ATP . 
Z 2 ATP E 1 602 602 ATP ATP . 
AA 3 IMP E 1 603 603 IMP IMP . 
BA 4 NAD E 1 604 604 NAD NAD . 
CA 2 ATP F 1 601 601 ATP ATP . 
DA 2 ATP F 1 602 602 ATP ATP . 
EA 3 IMP F 1 603 603 IMP IMP . 
FA 4 NAD F 1 604 604 NAD NAD . 
GA 2 ATP G 1 601 601 ATP ATP . 
HA 2 ATP G 1 602 602 ATP ATP . 
IA 3 IMP G 1 603 603 IMP IMP . 
JA 4 NAD G 1 604 604 NAD NAD . 
KA 2 ATP H 1 601 601 ATP ATP . 
LA 2 ATP H 1 602 602 ATP ATP . 
MA 3 IMP H 1 603 603 IMP IMP . 
NA 4 NAD H 1 604 604 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . N 2 218.314 174.579 167.338 1 103.5 ? PG ATP 602 B 1 
HETATM 2 O O1G ATP . . . N 2 218.744 175.887 167.959 1 94.19 ? O1G ATP 602 B 1 
HETATM 3 O O2G ATP . . . N 2 218.366 173.397 168.277 1 95.01 ? O2G ATP 602 B 1 
HETATM 4 O O3G ATP . . . N 2 217.051 174.665 166.515 1 95 ? O3G ATP 602 B 1 
HETATM 5 P PB ATP . . . N 2 219.399 174.906 164.78 1 96.58 ? PB ATP 602 B 1 
HETATM 6 O O1B ATP . . . N 2 218.881 176.319 164.902 1 93.78 ? O1B ATP 602 B 1 
HETATM 7 O O2B ATP . . . N 2 220.718 174.644 164.094 1 90.97 ? O2B ATP 602 B 1 
HETATM 8 O O3B ATP . . . N 2 219.464 174.264 166.256 1 98.63 ? O3B ATP 602 B 1 
HETATM 9 P PA ATP . . . N 2 218.409 173.638 162.496 1 98.94 ? PA ATP 602 B 1 
HETATM 10 O O1A ATP . . . N 2 218.765 172.174 162.396 1 95.04 ? O1A ATP 602 B 1 
HETATM 11 O O2A ATP . . . N 2 219.289 174.673 161.836 1 94.7 ? O2A ATP 602 B 1 
HETATM 12 O O3A ATP . . . N 2 218.27 174.016 164.055 1 95.04 ? O3A ATP 602 B 1 
HETATM 13 O O5' ATP . . . N 2 216.907 173.83 161.948 1 93.36 ? O5' ATP 602 B 1 
HETATM 14 C C5' ATP . . . N 2 216.303 175.122 161.927 1 94.37 ? C5' ATP 602 B 1 
HETATM 15 C C4' ATP . . . N 2 215.826 175.44 160.515 1 94.72 ? C4' ATP 602 B 1 
HETATM 16 O O4' ATP . . . N 2 215.943 176.845 160.271 1 93.3 ? O4' ATP 602 B 1 
HETATM 17 C C3' ATP . . . N 2 216.66 174.713 159.471 1 95.52 ? C3' ATP 602 B 1 
HETATM 18 O O3' ATP . . . N 2 215.838 173.785 158.752 1 94.25 ? O3' ATP 602 B 1 
HETATM 19 C C2' ATP . . . N 2 217.254 175.793 158.577 1 94.2 ? C2' ATP 602 B 1 
HETATM 20 O O2' ATP . . . N 2 216.798 175.701 157.221 1 94.04 ? O2' ATP 602 B 1 
HETATM 21 C C1' ATP . . . N 2 216.819 177.122 159.174 1 93.11 ? C1' ATP 602 B 1 
HETATM 22 N N9 ATP . . . N 2 218.01 177.859 159.665 1 94.53 ? N9 ATP 602 B 1 
HETATM 23 C C8 ATP . . . N 2 218.8 177.477 160.686 1 94.5 ? C8 ATP 602 B 1 
HETATM 24 N N7 ATP . . . N 2 219.807 178.366 160.886 1 94.09 ? N7 ATP 602 B 1 
HETATM 25 C C5 ATP . . . N 2 219.666 179.346 159.975 1 93.84 ? C5 ATP 602 B 1 
HETATM 26 C C6 ATP . . . N 2 220.388 180.594 159.63 1 94.1 ? C6 ATP 602 B 1 
HETATM 27 N N6 ATP . . . N 2 221.489 180.979 160.319 1 93.29 ? N6 ATP 602 B 1 
HETATM 28 N N1 ATP . . . N 2 219.91 181.333 158.605 1 94.52 ? N1 ATP 602 B 1 
HETATM 29 C C2 ATP . . . N 2 218.817 180.961 157.913 1 95.03 ? C2 ATP 602 B 1 
HETATM 30 N N3 ATP . . . N 2 218.114 179.843 158.171 1 95.25 ? N3 ATP 602 B 1 
HETATM 31 C C4 ATP . . . N 2 218.481 179.007 159.172 1 94.83 ? C4 ATP 602 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    98 
_model_server_stats.query_time_ms           541 
_model_server_stats.encode_time_ms          51 
_model_server_stats.element_count           31 
#