data_8G8F
#
_model_server_result.job_id            Piry9fSAS0Y4JLj0Fw0qNg 
_model_server_result.datetime_utc      '2025-08-31 06:42:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":603}' 
#
_entry.id    8G8F 
#
_exptl.entry_id    8G8F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              348.206 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSINIC ACID' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8G8F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 K N N 
? 3 O N N 
? 3 S N N 
? 3 W N N 
? 3 AA N N 
? 3 EA N N 
? 3 IA N N 
? 3 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 336 A CYS 331 1_555 K C2 IMP . A IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
covale ? covale2 B SG CYS 336 B CYS 331 1_555 O C2 IMP . B IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale3 C SG CYS 336 C CYS 331 1_555 S C2 IMP . C IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale4 D SG CYS 336 D CYS 331 1_555 W C2 IMP . D IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale5 E CB CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
covale ? covale6 E SG CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
covale ? covale7 F SG CYS 336 F CYS 331 1_555 EA C2 IMP . F IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale8 G SG CYS 336 G CYS 331 1_555 IA C2 IMP . G IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale9 H SG CYS 336 H CYS 331 1_555 MA C2 IMP . H IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
#
_chem_comp.formula           'C10 H13 N4 O8 P' 
_chem_comp.formula_weight    348.206 
_chem_comp.id                IMP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'INOSINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P IMP doub 220 n n 
P O2P IMP sing 221 n n 
P O3P IMP sing 222 n n 
P O5' IMP sing 223 n n 
O2P HOP2 IMP sing 224 n n 
O3P HOP3 IMP sing 225 n n 
O5' C5' IMP sing 226 n n 
C5' C4' IMP sing 227 n n 
C5' "H5'1" IMP sing 228 n n 
C5' "H5'2" IMP sing 229 n n 
C4' O4' IMP sing 230 n n 
C4' C3' IMP sing 231 n n 
C4' H4' IMP sing 232 n n 
O4' C1' IMP sing 233 n n 
C3' O3' IMP sing 234 n n 
C3' C2' IMP sing 235 n n 
C3' H3' IMP sing 236 n n 
O3' HO3' IMP sing 237 n n 
C2' O2' IMP sing 238 n n 
C2' C1' IMP sing 239 n n 
C2' H2' IMP sing 240 n n 
O2' HO2' IMP sing 241 n n 
C1' N9 IMP sing 242 n n 
C1' H1' IMP sing 243 n n 
N9 C8 IMP sing 244 n y 
N9 C4 IMP sing 245 n y 
C8 N7 IMP doub 246 n y 
C8 H8 IMP sing 247 n n 
N7 C5 IMP sing 248 n y 
C5 C6 IMP sing 249 n n 
C5 C4 IMP doub 250 n y 
C6 O6 IMP doub 251 n n 
C6 N1 IMP sing 252 n n 
N1 C2 IMP sing 253 n n 
N1 HN1 IMP sing 254 n n 
C2 N3 IMP doub 255 n n 
C2 H2 IMP sing 256 n n 
N3 C4 IMP sing 257 n n 
#
_atom_sites.entry_id                     8G8F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 601 601 ATP ATP . 
J 2 ATP A 1 602 602 ATP ATP . 
K 3 IMP A 1 603 603 IMP IMP . 
L 4 NAD A 1 604 604 NAD NAD . 
M 2 ATP B 1 601 601 ATP ATP . 
N 2 ATP B 1 602 602 ATP ATP . 
O 3 IMP B 1 603 603 IMP IMP . 
P 4 NAD B 1 604 604 NAD NAD . 
Q 2 ATP C 1 601 601 ATP ATP . 
R 2 ATP C 1 602 602 ATP ATP . 
S 3 IMP C 1 603 603 IMP IMP . 
T 4 NAD C 1 604 604 NAD NAD . 
U 2 ATP D 1 601 601 ATP ATP . 
V 2 ATP D 1 602 602 ATP ATP . 
W 3 IMP D 1 603 603 IMP IMP . 
X 4 NAD D 1 604 604 NAD NAD . 
Y 2 ATP E 1 601 601 ATP ATP . 
Z 2 ATP E 1 602 602 ATP ATP . 
AA 3 IMP E 1 603 603 IMP IMP . 
BA 4 NAD E 1 604 604 NAD NAD . 
CA 2 ATP F 1 601 601 ATP ATP . 
DA 2 ATP F 1 602 602 ATP ATP . 
EA 3 IMP F 1 603 603 IMP IMP . 
FA 4 NAD F 1 604 604 NAD NAD . 
GA 2 ATP G 1 601 601 ATP ATP . 
HA 2 ATP G 1 602 602 ATP ATP . 
IA 3 IMP G 1 603 603 IMP IMP . 
JA 4 NAD G 1 604 604 NAD NAD . 
KA 2 ATP H 1 601 601 ATP ATP . 
LA 2 ATP H 1 602 602 ATP ATP . 
MA 3 IMP H 1 603 603 IMP IMP . 
NA 4 NAD H 1 604 604 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P IMP . . . S 3 159.623 189.832 140.319 1 33.59 ? P IMP 603 C 1 
HETATM 2 O O1P IMP . . . S 3 160.364 188.623 139.811 1 40.41 ? O1P IMP 603 C 1 
HETATM 3 O O2P IMP . . . S 3 159.39 189.65 141.796 1 44.47 ? O2P IMP 603 C 1 
HETATM 4 O O3P IMP . . . S 3 160.365 191.057 139.855 1 39.31 ? O3P IMP 603 C 1 
HETATM 5 O O5' IMP . . . S 3 158.188 189.878 139.634 1 35.71 ? O5' IMP 603 C 1 
HETATM 6 C C5' IMP . . . S 3 157.45 191.088 139.566 1 32.93 ? C5' IMP 603 C 1 
HETATM 7 C C4' IMP . . . S 3 156.435 191.055 138.452 1 33.71 ? C4' IMP 603 C 1 
HETATM 8 O O4' IMP . . . S 3 155.528 189.951 138.647 1 39.49 ? O4' IMP 603 C 1 
HETATM 9 C C3' IMP . . . S 3 155.512 192.254 138.355 1 32.44 ? C3' IMP 603 C 1 
HETATM 10 O O3' IMP . . . S 3 156.122 193.373 137.738 1 38.55 ? O3' IMP 603 C 1 
HETATM 11 C C2' IMP . . . S 3 154.32 191.702 137.577 1 31.06 ? C2' IMP 603 C 1 
HETATM 12 O O2' IMP . . . S 3 154.566 191.746 136.181 1 42.18 ? O2' IMP 603 C 1 
HETATM 13 C C1' IMP . . . S 3 154.299 190.234 138.017 1 35.3 ? C1' IMP 603 C 1 
HETATM 14 N N9 IMP . . . S 3 153.207 189.952 138.964 1 40.05 ? N9 IMP 603 C 1 
HETATM 15 C C8 IMP . . . S 3 152.652 190.858 139.788 1 39.5 ? C8 IMP 603 C 1 
HETATM 16 N N7 IMP . . . S 3 151.699 190.218 140.492 1 38.24 ? N7 IMP 603 C 1 
HETATM 17 C C5 IMP . . . S 3 151.675 188.947 140.103 1 33.95 ? C5 IMP 603 C 1 
HETATM 18 C C6 IMP . . . S 3 150.819 187.755 140.537 1 33.82 ? C6 IMP 603 C 1 
HETATM 19 O O6 IMP . . . S 3 149.996 187.898 141.369 1 44.52 ? O6 IMP 603 C 1 
HETATM 20 N N1 IMP . . . S 3 151.011 186.473 139.937 1 39.35 ? N1 IMP 603 C 1 
HETATM 21 C C2 IMP . . . S 3 152.017 186.305 138.922 1 40.25 ? C2 IMP 603 C 1 
HETATM 22 N N3 IMP . . . S 3 152.831 187.445 138.512 1 35.97 ? N3 IMP 603 C 1 
HETATM 23 C C4 IMP . . . S 3 152.622 188.778 139.143 1 35.03 ? C4 IMP 603 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#