data_8G8F
#
_model_server_result.job_id            8O7jrxKxDCufwcSYEhndzw 
_model_server_result.datetime_utc      '2025-08-31 06:42:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":604}' 
#
_entry.id    8G8F 
#
_exptl.entry_id    8G8F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8G8F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
? 4 BA N N 
? 4 FA N N 
? 4 JA N N 
? 4 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 336 A CYS 331 1_555 K C2 IMP . A IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
covale ? covale2 B SG CYS 336 B CYS 331 1_555 O C2 IMP . B IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale3 C SG CYS 336 C CYS 331 1_555 S C2 IMP . C IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale4 D SG CYS 336 D CYS 331 1_555 W C2 IMP . D IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale5 E CB CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
covale ? covale6 E SG CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
covale ? covale7 F SG CYS 336 F CYS 331 1_555 EA C2 IMP . F IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale8 G SG CYS 336 G CYS 331 1_555 IA C2 IMP . G IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale9 H SG CYS 336 H CYS 331 1_555 MA C2 IMP . H IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 322 n n 
PA O2A NAD sing 323 n n 
PA O5B NAD sing 324 n n 
PA O3 NAD sing 325 n n 
O2A HOA2 NAD sing 326 n n 
O5B C5B NAD sing 327 n n 
C5B C4B NAD sing 328 n n 
C5B H51A NAD sing 329 n n 
C5B H52A NAD sing 330 n n 
C4B O4B NAD sing 331 n n 
C4B C3B NAD sing 332 n n 
C4B H4B NAD sing 333 n n 
O4B C1B NAD sing 334 n n 
C3B O3B NAD sing 335 n n 
C3B C2B NAD sing 336 n n 
C3B H3B NAD sing 337 n n 
O3B HO3A NAD sing 338 n n 
C2B O2B NAD sing 339 n n 
C2B C1B NAD sing 340 n n 
C2B H2B NAD sing 341 n n 
O2B HO2A NAD sing 342 n n 
C1B N9A NAD sing 343 n n 
C1B H1B NAD sing 344 n n 
N9A C8A NAD sing 345 n y 
N9A C4A NAD sing 346 n y 
C8A N7A NAD doub 347 n y 
C8A H8A NAD sing 348 n n 
N7A C5A NAD sing 349 n y 
C5A C6A NAD sing 350 n y 
C5A C4A NAD doub 351 n y 
C6A N6A NAD sing 352 n n 
C6A N1A NAD doub 353 n y 
N6A H61A NAD sing 354 n n 
N6A H62A NAD sing 355 n n 
N1A C2A NAD sing 356 n y 
C2A N3A NAD doub 357 n y 
C2A H2A NAD sing 358 n n 
N3A C4A NAD sing 359 n y 
O3 PN NAD sing 360 n n 
PN O1N NAD doub 361 n n 
PN O2N NAD sing 362 n n 
PN O5D NAD sing 363 n n 
O5D C5D NAD sing 364 n n 
C5D C4D NAD sing 365 n n 
C5D H51N NAD sing 366 n n 
C5D H52N NAD sing 367 n n 
C4D O4D NAD sing 368 n n 
C4D C3D NAD sing 369 n n 
C4D H4D NAD sing 370 n n 
O4D C1D NAD sing 371 n n 
C3D O3D NAD sing 372 n n 
C3D C2D NAD sing 373 n n 
C3D H3D NAD sing 374 n n 
O3D HO3N NAD sing 375 n n 
C2D O2D NAD sing 376 n n 
C2D C1D NAD sing 377 n n 
C2D H2D NAD sing 378 n n 
O2D HO2N NAD sing 379 n n 
C1D N1N NAD sing 380 n n 
C1D H1D NAD sing 381 n n 
N1N C2N NAD sing 382 n y 
N1N C6N NAD doub 383 n y 
C2N C3N NAD doub 384 n y 
C2N H2N NAD sing 385 n n 
C3N C7N NAD sing 386 n n 
C3N C4N NAD sing 387 n y 
C7N O7N NAD doub 388 n n 
C7N N7N NAD sing 389 n n 
N7N H71N NAD sing 390 n n 
N7N H72N NAD sing 391 n n 
C4N C5N NAD doub 392 n y 
C4N H4N NAD sing 393 n n 
C5N C6N NAD sing 394 n y 
C5N H5N NAD sing 395 n n 
C6N H6N NAD sing 396 n n 
#
_atom_sites.entry_id                     8G8F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 601 601 ATP ATP . 
J 2 ATP A 1 602 602 ATP ATP . 
K 3 IMP A 1 603 603 IMP IMP . 
L 4 NAD A 1 604 604 NAD NAD . 
M 2 ATP B 1 601 601 ATP ATP . 
N 2 ATP B 1 602 602 ATP ATP . 
O 3 IMP B 1 603 603 IMP IMP . 
P 4 NAD B 1 604 604 NAD NAD . 
Q 2 ATP C 1 601 601 ATP ATP . 
R 2 ATP C 1 602 602 ATP ATP . 
S 3 IMP C 1 603 603 IMP IMP . 
T 4 NAD C 1 604 604 NAD NAD . 
U 2 ATP D 1 601 601 ATP ATP . 
V 2 ATP D 1 602 602 ATP ATP . 
W 3 IMP D 1 603 603 IMP IMP . 
X 4 NAD D 1 604 604 NAD NAD . 
Y 2 ATP E 1 601 601 ATP ATP . 
Z 2 ATP E 1 602 602 ATP ATP . 
AA 3 IMP E 1 603 603 IMP IMP . 
BA 4 NAD E 1 604 604 NAD NAD . 
CA 2 ATP F 1 601 601 ATP ATP . 
DA 2 ATP F 1 602 602 ATP ATP . 
EA 3 IMP F 1 603 603 IMP IMP . 
FA 4 NAD F 1 604 604 NAD NAD . 
GA 2 ATP G 1 601 601 ATP ATP . 
HA 2 ATP G 1 602 602 ATP ATP . 
IA 3 IMP G 1 603 603 IMP IMP . 
JA 4 NAD G 1 604 604 NAD NAD . 
KA 2 ATP H 1 601 601 ATP ATP . 
LA 2 ATP H 1 602 602 ATP ATP . 
MA 3 IMP H 1 603 603 IMP IMP . 
NA 4 NAD H 1 604 604 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . FA 4 191.444 142.162 201.25 1 79.77 ? PA NAD 604 F 1 
HETATM 2 O O1A NAD . . . FA 4 192.662 143.052 201.308 1 49.04 ? O1A NAD 604 F 1 
HETATM 3 O O2A NAD . . . FA 4 191.606 140.68 201.009 1 55.86 ? O2A NAD 604 F 1 
HETATM 4 O O5B NAD . . . FA 4 190.604 142.368 202.607 1 47.99 ? O5B NAD 604 F 1 
HETATM 5 C C5B NAD . . . FA 4 190.602 141.364 203.62 1 46.45 ? C5B NAD 604 F 1 
HETATM 6 C C4B NAD . . . FA 4 189.65 140.244 203.221 1 46.59 ? C4B NAD 604 F 1 
HETATM 7 O O4B NAD . . . FA 4 190.393 139.158 202.663 1 52.96 ? O4B NAD 604 F 1 
HETATM 8 C C3B NAD . . . FA 4 188.89 139.714 204.427 1 42.74 ? C3B NAD 604 F 1 
HETATM 9 O O3B NAD . . . FA 4 187.481 139.826 204.193 1 44.14 ? O3B NAD 604 F 1 
HETATM 10 C C2B NAD . . . FA 4 189.346 138.272 204.612 1 43.73 ? C2B NAD 604 F 1 
HETATM 11 O O2B NAD . . . FA 4 188.267 137.333 204.521 1 46.65 ? O2B NAD 604 F 1 
HETATM 12 C C1B NAD . . . FA 4 190.354 138.005 203.505 1 43.17 ? C1B NAD 604 F 1 
HETATM 13 N N9A NAD . . . FA 4 191.697 137.782 204.097 1 43.91 ? N9A NAD 604 F 1 
HETATM 14 C C8A NAD . . . FA 4 192.668 138.708 204.21 1 47.03 ? C8A NAD 604 F 1 
HETATM 15 N N7A NAD . . . FA 4 193.776 138.187 204.796 1 43.47 ? N7A NAD 604 F 1 
HETATM 16 C C5A NAD . . . FA 4 193.517 136.895 205.07 1 43.47 ? C5A NAD 604 F 1 
HETATM 17 C C6A NAD . . . FA 4 194.253 135.767 205.687 1 43.04 ? C6A NAD 604 F 1 
HETATM 18 N N6A NAD . . . FA 4 195.521 135.923 206.14 1 41.28 ? N6A NAD 604 F 1 
HETATM 19 N N1A NAD . . . FA 4 193.617 134.578 205.783 1 42.09 ? N1A NAD 604 F 1 
HETATM 20 C C2A NAD . . . FA 4 192.358 134.411 205.337 1 43.21 ? C2A NAD 604 F 1 
HETATM 21 N N3A NAD . . . FA 4 191.632 135.39 204.767 1 41.21 ? N3A NAD 604 F 1 
HETATM 22 C C4A NAD . . . FA 4 192.146 136.633 204.608 1 42.5 ? C4A NAD 604 F 1 
HETATM 23 O O3 NAD . . . FA 4 190.445 142.743 200.129 1 57.23 ? O3 NAD 604 F 1 
HETATM 24 P PN NAD . . . FA 4 189.983 144.285 200.165 1 56.4 ? PN NAD 604 F 1 
HETATM 25 O O1N NAD . . . FA 4 190.366 144.862 201.507 1 42.17 ? O1N NAD 604 F 1 
HETATM 26 O O2N NAD . . . FA 4 188.551 144.361 199.693 1 47.05 ? O2N NAD 604 F 1 
HETATM 27 O O5D NAD . . . FA 4 190.921 144.956 199.041 1 47.33 ? O5D NAD 604 F 1 
HETATM 28 C C5D NAD . . . FA 4 190.376 145.88 198.101 1 42.66 ? C5D NAD 604 F 1 
HETATM 29 C C4D NAD . . . FA 4 191.315 147.07 197.945 1 47.63 ? C4D NAD 604 F 1 
HETATM 30 O O4D NAD . . . FA 4 190.55 148.259 197.731 1 50.35 ? O4D NAD 604 F 1 
HETATM 31 C C3D NAD . . . FA 4 192.163 147.279 199.191 1 47.52 ? C3D NAD 604 F 1 
HETATM 32 O O3D NAD . . . FA 4 193.551 147.124 198.868 1 44.98 ? O3D NAD 604 F 1 
HETATM 33 C C2D NAD . . . FA 4 191.829 148.675 199.702 1 44.15 ? C2D NAD 604 F 1 
HETATM 34 O O2D NAD . . . FA 4 192.958 149.558 199.681 1 46.01 ? O2D NAD 604 F 1 
HETATM 35 C C1D NAD . . . FA 4 190.744 149.211 198.78 1 44.41 ? C1D NAD 604 F 1 
HETATM 36 N N1N NAD . . . FA 4 189.502 149.386 199.538 1 43.45 ? N1N NAD 604 F 1 
HETATM 37 C C2N NAD . . . FA 4 189.417 150.372 200.44 1 41.38 ? C2N NAD 604 F 1 
HETATM 38 C C3N NAD . . . FA 4 188.253 150.563 201.175 1 44.92 ? C3N NAD 604 F 1 
HETATM 39 C C7N NAD . . . FA 4 188.17 151.672 202.182 1 44.74 ? C7N NAD 604 F 1 
HETATM 40 O O7N NAD . . . FA 4 187.121 151.864 202.775 1 44.41 ? O7N NAD 604 F 1 
HETATM 41 N N7N NAD . . . FA 4 189.249 152.421 202.402 1 44.25 ? N7N NAD 604 F 1 
HETATM 42 C C4N NAD . . . FA 4 187.168 149.722 200.971 1 48.67 ? C4N NAD 604 F 1 
HETATM 43 C C5N NAD . . . FA 4 187.281 148.707 200.032 1 44.07 ? C5N NAD 604 F 1 
HETATM 44 C C6N NAD . . . FA 4 188.469 148.56 199.324 1 40.36 ? C6N NAD 604 F 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           58 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           402 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#