data_8G8F # _model_server_result.job_id mRMDfFPv9F3JPbWddhjLjQ _model_server_result.datetime_utc '2025-08-31 06:44:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":604}' # _entry.id 8G8F # _exptl.entry_id 8G8F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G8F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 P N N ? 4 T N N ? 4 X N N ? 4 BA N N ? 4 FA N N ? 4 JA N N ? 4 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 336 A CYS 331 1_555 K C2 IMP . A IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? covale ? covale2 B SG CYS 336 B CYS 331 1_555 O C2 IMP . B IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale3 C SG CYS 336 C CYS 331 1_555 S C2 IMP . C IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale4 D SG CYS 336 D CYS 331 1_555 W C2 IMP . D IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 E CB CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale6 E SG CYS 336 E CYS 331 1_555 AA C2 IMP . E IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? covale ? covale7 F SG CYS 336 F CYS 331 1_555 EA C2 IMP . F IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale8 G SG CYS 336 G CYS 331 1_555 IA C2 IMP . G IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale9 H SG CYS 336 H CYS 331 1_555 MA C2 IMP . H IMP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 322 n n PA O2A NAD sing 323 n n PA O5B NAD sing 324 n n PA O3 NAD sing 325 n n O2A HOA2 NAD sing 326 n n O5B C5B NAD sing 327 n n C5B C4B NAD sing 328 n n C5B H51A NAD sing 329 n n C5B H52A NAD sing 330 n n C4B O4B NAD sing 331 n n C4B C3B NAD sing 332 n n C4B H4B NAD sing 333 n n O4B C1B NAD sing 334 n n C3B O3B NAD sing 335 n n C3B C2B NAD sing 336 n n C3B H3B NAD sing 337 n n O3B HO3A NAD sing 338 n n C2B O2B NAD sing 339 n n C2B C1B NAD sing 340 n n C2B H2B NAD sing 341 n n O2B HO2A NAD sing 342 n n C1B N9A NAD sing 343 n n C1B H1B NAD sing 344 n n N9A C8A NAD sing 345 n y N9A C4A NAD sing 346 n y C8A N7A NAD doub 347 n y C8A H8A NAD sing 348 n n N7A C5A NAD sing 349 n y C5A C6A NAD sing 350 n y C5A C4A NAD doub 351 n y C6A N6A NAD sing 352 n n C6A N1A NAD doub 353 n y N6A H61A NAD sing 354 n n N6A H62A NAD sing 355 n n N1A C2A NAD sing 356 n y C2A N3A NAD doub 357 n y C2A H2A NAD sing 358 n n N3A C4A NAD sing 359 n y O3 PN NAD sing 360 n n PN O1N NAD doub 361 n n PN O2N NAD sing 362 n n PN O5D NAD sing 363 n n O5D C5D NAD sing 364 n n C5D C4D NAD sing 365 n n C5D H51N NAD sing 366 n n C5D H52N NAD sing 367 n n C4D O4D NAD sing 368 n n C4D C3D NAD sing 369 n n C4D H4D NAD sing 370 n n O4D C1D NAD sing 371 n n C3D O3D NAD sing 372 n n C3D C2D NAD sing 373 n n C3D H3D NAD sing 374 n n O3D HO3N NAD sing 375 n n C2D O2D NAD sing 376 n n C2D C1D NAD sing 377 n n C2D H2D NAD sing 378 n n O2D HO2N NAD sing 379 n n C1D N1N NAD sing 380 n n C1D H1D NAD sing 381 n n N1N C2N NAD sing 382 n y N1N C6N NAD doub 383 n y C2N C3N NAD doub 384 n y C2N H2N NAD sing 385 n n C3N C7N NAD sing 386 n n C3N C4N NAD sing 387 n y C7N O7N NAD doub 388 n n C7N N7N NAD sing 389 n n N7N H71N NAD sing 390 n n N7N H72N NAD sing 391 n n C4N C5N NAD doub 392 n y C4N H4N NAD sing 393 n n C5N C6N NAD sing 394 n y C5N H5N NAD sing 395 n n C6N H6N NAD sing 396 n n # _atom_sites.entry_id 8G8F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 ATP A 1 601 601 ATP ATP . J 2 ATP A 1 602 602 ATP ATP . K 3 IMP A 1 603 603 IMP IMP . L 4 NAD A 1 604 604 NAD NAD . M 2 ATP B 1 601 601 ATP ATP . N 2 ATP B 1 602 602 ATP ATP . O 3 IMP B 1 603 603 IMP IMP . P 4 NAD B 1 604 604 NAD NAD . Q 2 ATP C 1 601 601 ATP ATP . R 2 ATP C 1 602 602 ATP ATP . S 3 IMP C 1 603 603 IMP IMP . T 4 NAD C 1 604 604 NAD NAD . U 2 ATP D 1 601 601 ATP ATP . V 2 ATP D 1 602 602 ATP ATP . W 3 IMP D 1 603 603 IMP IMP . X 4 NAD D 1 604 604 NAD NAD . Y 2 ATP E 1 601 601 ATP ATP . Z 2 ATP E 1 602 602 ATP ATP . AA 3 IMP E 1 603 603 IMP IMP . BA 4 NAD E 1 604 604 NAD NAD . CA 2 ATP F 1 601 601 ATP ATP . DA 2 ATP F 1 602 602 ATP ATP . EA 3 IMP F 1 603 603 IMP IMP . FA 4 NAD F 1 604 604 NAD NAD . GA 2 ATP G 1 601 601 ATP ATP . HA 2 ATP G 1 602 602 ATP ATP . IA 3 IMP G 1 603 603 IMP IMP . JA 4 NAD G 1 604 604 NAD NAD . KA 2 ATP H 1 601 601 ATP ATP . LA 2 ATP H 1 602 602 ATP ATP . MA 3 IMP H 1 603 603 IMP IMP . NA 4 NAD H 1 604 604 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . JA 4 142.337 145.915 201.564 1 65.74 ? PA NAD 604 G 1 HETATM 2 O O1A NAD . . . JA 4 141.816 145.554 202.934 1 57.76 ? O1A NAD 604 G 1 HETATM 3 O O2A NAD . . . JA 4 142.721 144.823 200.593 1 50.47 ? O2A NAD 604 G 1 HETATM 4 O O5B NAD . . . JA 4 141.254 146.868 200.849 1 53.27 ? O5B NAD 604 G 1 HETATM 5 C C5B NAD . . . JA 4 139.859 146.667 201.065 1 49.37 ? C5B NAD 604 G 1 HETATM 6 C C4B NAD . . . JA 4 139.334 147.727 202.024 1 50.94 ? C4B NAD 604 G 1 HETATM 7 O O4B NAD . . . JA 4 138.108 147.282 202.612 1 56.1 ? O4B NAD 604 G 1 HETATM 8 C C3B NAD . . . JA 4 140.322 147.994 203.15 1 45.82 ? C3B NAD 604 G 1 HETATM 9 O O3B NAD . . . JA 4 140.785 149.349 203.078 1 50.19 ? O3B NAD 604 G 1 HETATM 10 C C2B NAD . . . JA 4 139.58 147.691 204.445 1 49.46 ? C2B NAD 604 G 1 HETATM 11 O O2B NAD . . . JA 4 139.462 148.838 205.298 1 52.5 ? O2B NAD 604 G 1 HETATM 12 C C1B NAD . . . JA 4 138.195 147.213 204.037 1 50.48 ? C1B NAD 604 G 1 HETATM 13 N N9A NAD . . . JA 4 137.999 145.81 204.484 1 49.26 ? N9A NAD 604 G 1 HETATM 14 C C8A NAD . . . JA 4 138.966 144.883 204.612 1 50.73 ? C8A NAD 604 G 1 HETATM 15 N N7A NAD . . . JA 4 138.457 143.7 205.041 1 50.14 ? N7A NAD 604 G 1 HETATM 16 C C5A NAD . . . JA 4 137.13 143.863 205.195 1 46.44 ? C5A NAD 604 G 1 HETATM 17 C C6A NAD . . . JA 4 135.991 143.015 205.62 1 48.34 ? C6A NAD 604 G 1 HETATM 18 N N6A NAD . . . JA 4 136.176 141.721 205.976 1 50.22 ? N6A NAD 604 G 1 HETATM 19 N N1A NAD . . . JA 4 134.762 143.577 205.641 1 50.19 ? N1A NAD 604 G 1 HETATM 20 C C2A NAD . . . JA 4 134.565 144.861 205.289 1 49.98 ? C2A NAD 604 G 1 HETATM 21 N N3A NAD . . . JA 4 135.551 145.687 204.894 1 48.05 ? N3A NAD 604 G 1 HETATM 22 C C4A NAD . . . JA 4 136.833 145.256 204.826 1 47.48 ? C4A NAD 604 G 1 HETATM 23 O O3 NAD . . . JA 4 143.602 146.893 201.748 1 52.85 ? O3 NAD 604 G 1 HETATM 24 P PN NAD . . . JA 4 144.246 147.649 200.48 1 59.85 ? PN NAD 604 G 1 HETATM 25 O O1N NAD . . . JA 4 145.165 148.731 200.992 1 56.98 ? O1N NAD 604 G 1 HETATM 26 O O2N NAD . . . JA 4 143.131 147.998 199.523 1 55.72 ? O2N NAD 604 G 1 HETATM 27 O O5D NAD . . . JA 4 145.149 146.5 199.804 1 52.91 ? O5D NAD 604 G 1 HETATM 28 C C5D NAD . . . JA 4 145.333 146.465 198.39 1 51.15 ? C5D NAD 604 G 1 HETATM 29 C C4D NAD . . . JA 4 146.7 145.877 198.056 1 53.81 ? C4D NAD 604 G 1 HETATM 30 O O4D NAD . . . JA 4 147.644 146.932 197.85 1 57.9 ? O4D NAD 604 G 1 HETATM 31 C C3D NAD . . . JA 4 147.225 144.995 199.179 1 53.91 ? C3D NAD 604 G 1 HETATM 32 O O3D NAD . . . JA 4 147.282 143.632 198.738 1 50.91 ? O3D NAD 604 G 1 HETATM 33 C C2D NAD . . . JA 4 148.592 145.553 199.552 1 49.06 ? C2D NAD 604 G 1 HETATM 34 O O2D NAD . . . JA 4 149.649 144.602 199.37 1 50.39 ? O2D NAD 604 G 1 HETATM 35 C C1D NAD . . . JA 4 148.821 146.753 198.643 1 49.05 ? C1D NAD 604 G 1 HETATM 36 N N1N NAD . . . JA 4 149.075 147.946 199.455 1 48.57 ? N1N NAD 604 G 1 HETATM 37 C C2N NAD . . . JA 4 150.088 147.94 200.331 1 48.4 ? C2N NAD 604 G 1 HETATM 38 C C3N NAD . . . JA 4 150.357 149.055 201.115 1 50.02 ? C3N NAD 604 G 1 HETATM 39 C C7N NAD . . . JA 4 151.494 149.034 202.092 1 50.85 ? C7N NAD 604 G 1 HETATM 40 O O7N NAD . . . JA 4 152.119 148 202.259 1 55.17 ? O7N NAD 604 G 1 HETATM 41 N N7N NAD . . . JA 4 151.793 150.15 202.754 1 45.26 ? N7N NAD 604 G 1 HETATM 42 C C4N NAD . . . JA 4 149.565 150.188 200.988 1 50.19 ? C4N NAD 604 G 1 HETATM 43 C C5N NAD . . . JA 4 148.522 150.171 200.073 1 50.19 ? C5N NAD 604 G 1 HETATM 44 C C6N NAD . . . JA 4 148.297 149.028 199.314 1 46.79 ? C6N NAD 604 G 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 199 _model_server_stats.create_model_time_ms 109 _model_server_stats.query_time_ms 495 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #