data_8G8J # _model_server_result.job_id CQsd8LJ1JMvvrz5WDRqnXA _model_server_result.datetime_utc '2024-11-18 03:49:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 8G8J # _exptl.entry_id 8G8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8G8J _cell.length_a 98.9 _cell.length_b 98.9 _cell.length_c 81.222 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc2 A OD2 ASP 13 A ASP 13 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A O MET 14 A MET 14 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 A OD2 ASP 115 A ASP 115 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc5 D O1A CZU . A CZU 501 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 D O1G CZU . A CZU 501 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc7 D O2B CZU . A CZU 501 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? hydrog WATSON-CRICK hydrog1 B N3 DC 5 T DC 5 1_555 C N1 DG 8 P DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 5 T DC 5 1_555 C O6 DG 8 P DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 5 T DC 5 1_555 C N2 DG 8 P DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 6 T DT 6 1_555 C N1 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 6 T DT 6 1_555 C N6 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 7 T DC 7 1_555 C N1 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 7 T DC 7 1_555 C O6 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 7 T DC 7 1_555 C N2 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 8 T DA 8 1_555 C N3 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 8 T DA 8 1_555 C O4 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 9 T DC 9 1_555 C N1 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 9 T DC 9 1_555 C O6 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 9 T DC 9 1_555 C N2 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DA 10 T DA 10 1_555 C N3 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N6 DA 10 T DA 10 1_555 C O4 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DC 11 T DC 11 1_555 C N1 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N4 DC 11 T DC 11 1_555 C O6 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O2 DC 11 T DC 11 1_555 C N2 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DT 12 T DT 12 1_555 C N1 DA 1 P DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O4 DT 12 T DT 12 1_555 C N6 DA 1 P DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G8J _atom_sites.fract_transf_matrix[1][1] 0.010111 _atom_sites.fract_transf_matrix[1][2] 0.005838 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CZU A 1 501 501 CZU ITT . E 5 CA A 1 502 1 CA CA . F 6 HOH A 1 601 25 HOH HOH . F 6 HOH A 2 602 35 HOH HOH . F 6 HOH A 3 603 81 HOH HOH . F 6 HOH A 4 604 154 HOH HOH . F 6 HOH A 5 605 162 HOH HOH . F 6 HOH A 6 606 89 HOH HOH . F 6 HOH A 7 607 120 HOH HOH . F 6 HOH A 8 608 155 HOH HOH . F 6 HOH A 9 609 136 HOH HOH . F 6 HOH A 10 610 123 HOH HOH . F 6 HOH A 11 611 58 HOH HOH . F 6 HOH A 12 612 135 HOH HOH . F 6 HOH A 13 613 10 HOH HOH . F 6 HOH A 14 614 145 HOH HOH . F 6 HOH A 15 615 53 HOH HOH . F 6 HOH A 16 616 65 HOH HOH . F 6 HOH A 17 617 19 HOH HOH . F 6 HOH A 18 618 39 HOH HOH . F 6 HOH A 19 619 94 HOH HOH . F 6 HOH A 20 620 55 HOH HOH . F 6 HOH A 21 621 2 HOH HOH . F 6 HOH A 22 622 56 HOH HOH . F 6 HOH A 23 623 36 HOH HOH . F 6 HOH A 24 624 142 HOH HOH . F 6 HOH A 25 625 109 HOH HOH . F 6 HOH A 26 626 71 HOH HOH . F 6 HOH A 27 627 62 HOH HOH . F 6 HOH A 28 628 95 HOH HOH . F 6 HOH A 29 629 125 HOH HOH . F 6 HOH A 30 630 87 HOH HOH . F 6 HOH A 31 631 15 HOH HOH . F 6 HOH A 32 632 75 HOH HOH . F 6 HOH A 33 633 38 HOH HOH . F 6 HOH A 34 634 41 HOH HOH . F 6 HOH A 35 635 27 HOH HOH . F 6 HOH A 36 636 88 HOH HOH . F 6 HOH A 37 637 43 HOH HOH . F 6 HOH A 38 638 79 HOH HOH . F 6 HOH A 39 639 126 HOH HOH . F 6 HOH A 40 640 12 HOH HOH . F 6 HOH A 41 641 100 HOH HOH . F 6 HOH A 42 642 34 HOH HOH . F 6 HOH A 43 643 26 HOH HOH . F 6 HOH A 44 644 11 HOH HOH . F 6 HOH A 45 645 102 HOH HOH . F 6 HOH A 46 646 1 HOH HOH . F 6 HOH A 47 647 48 HOH HOH . F 6 HOH A 48 648 70 HOH HOH . F 6 HOH A 49 649 28 HOH HOH . F 6 HOH A 50 650 121 HOH HOH . F 6 HOH A 51 651 57 HOH HOH . F 6 HOH A 52 652 16 HOH HOH . F 6 HOH A 53 653 96 HOH HOH . F 6 HOH A 54 654 7 HOH HOH . F 6 HOH A 55 655 111 HOH HOH . F 6 HOH A 56 656 5 HOH HOH . F 6 HOH A 57 657 134 HOH HOH . F 6 HOH A 58 658 3 HOH HOH . F 6 HOH A 59 659 14 HOH HOH . F 6 HOH A 60 660 6 HOH HOH . F 6 HOH A 61 661 131 HOH HOH . F 6 HOH A 62 662 151 HOH HOH . F 6 HOH A 63 663 163 HOH HOH . F 6 HOH A 64 664 13 HOH HOH . F 6 HOH A 65 665 40 HOH HOH . F 6 HOH A 66 666 17 HOH HOH . F 6 HOH A 67 667 45 HOH HOH . F 6 HOH A 68 668 129 HOH HOH . F 6 HOH A 69 669 31 HOH HOH . F 6 HOH A 70 670 21 HOH HOH . F 6 HOH A 71 671 42 HOH HOH . F 6 HOH A 72 672 101 HOH HOH . F 6 HOH A 73 673 64 HOH HOH . F 6 HOH A 74 674 44 HOH HOH . F 6 HOH A 75 675 24 HOH HOH . F 6 HOH A 76 676 32 HOH HOH . F 6 HOH A 77 677 4 HOH HOH . F 6 HOH A 78 678 52 HOH HOH . F 6 HOH A 79 679 86 HOH HOH . F 6 HOH A 80 680 103 HOH HOH . F 6 HOH A 81 681 23 HOH HOH . F 6 HOH A 82 682 9 HOH HOH . F 6 HOH A 83 683 78 HOH HOH . F 6 HOH A 84 684 161 HOH HOH . F 6 HOH A 85 685 47 HOH HOH . F 6 HOH A 86 686 20 HOH HOH . F 6 HOH A 87 687 66 HOH HOH . F 6 HOH A 88 688 67 HOH HOH . F 6 HOH A 89 689 51 HOH HOH . F 6 HOH A 90 690 83 HOH HOH . F 6 HOH A 91 691 8 HOH HOH . F 6 HOH A 92 692 146 HOH HOH . F 6 HOH A 93 693 61 HOH HOH . F 6 HOH A 94 694 82 HOH HOH . F 6 HOH A 95 695 29 HOH HOH . F 6 HOH A 96 696 18 HOH HOH . F 6 HOH A 97 697 113 HOH HOH . F 6 HOH A 98 698 133 HOH HOH . F 6 HOH A 99 699 157 HOH HOH . F 6 HOH A 100 700 73 HOH HOH . F 6 HOH A 101 701 30 HOH HOH . F 6 HOH A 102 702 141 HOH HOH . F 6 HOH A 103 703 84 HOH HOH . F 6 HOH A 104 704 54 HOH HOH . F 6 HOH A 105 705 118 HOH HOH . F 6 HOH A 106 706 166 HOH HOH . F 6 HOH A 107 707 76 HOH HOH . F 6 HOH A 108 708 49 HOH HOH . F 6 HOH A 109 709 80 HOH HOH . F 6 HOH A 110 710 127 HOH HOH . F 6 HOH A 111 711 152 HOH HOH . F 6 HOH A 112 712 69 HOH HOH . F 6 HOH A 113 713 110 HOH HOH . F 6 HOH A 114 714 143 HOH HOH . F 6 HOH A 115 715 139 HOH HOH . F 6 HOH A 116 716 37 HOH HOH . F 6 HOH A 117 717 98 HOH HOH . F 6 HOH A 118 718 105 HOH HOH . F 6 HOH A 119 719 91 HOH HOH . F 6 HOH A 120 720 124 HOH HOH . F 6 HOH A 121 721 148 HOH HOH . F 6 HOH A 122 722 72 HOH HOH . F 6 HOH A 123 723 74 HOH HOH . F 6 HOH A 124 724 144 HOH HOH . F 6 HOH A 125 725 90 HOH HOH . F 6 HOH A 126 726 99 HOH HOH . F 6 HOH A 127 727 117 HOH HOH . F 6 HOH A 128 728 93 HOH HOH . F 6 HOH A 129 729 22 HOH HOH . F 6 HOH A 130 730 122 HOH HOH . F 6 HOH A 131 731 165 HOH HOH . F 6 HOH A 132 732 106 HOH HOH . F 6 HOH A 133 733 138 HOH HOH . F 6 HOH A 134 734 119 HOH HOH . F 6 HOH A 135 735 114 HOH HOH . F 6 HOH A 136 736 116 HOH HOH . F 6 HOH A 137 737 153 HOH HOH . F 6 HOH A 138 738 140 HOH HOH . F 6 HOH A 139 739 128 HOH HOH . F 6 HOH A 140 740 150 HOH HOH . F 6 HOH A 141 741 46 HOH HOH . F 6 HOH A 142 742 60 HOH HOH . F 6 HOH A 143 743 147 HOH HOH . G 6 HOH T 1 101 130 HOH HOH . G 6 HOH T 2 102 104 HOH HOH . G 6 HOH T 3 103 97 HOH HOH . G 6 HOH T 4 104 167 HOH HOH . G 6 HOH T 5 105 156 HOH HOH . G 6 HOH T 6 106 158 HOH HOH . G 6 HOH T 7 107 149 HOH HOH . G 6 HOH T 8 108 164 HOH HOH . G 6 HOH T 9 109 160 HOH HOH . H 6 HOH P 1 101 137 HOH HOH . H 6 HOH P 2 102 115 HOH HOH . H 6 HOH P 3 103 159 HOH HOH . H 6 HOH P 4 104 59 HOH HOH . H 6 HOH P 5 105 107 HOH HOH . H 6 HOH P 6 106 77 HOH HOH . H 6 HOH P 7 107 33 HOH HOH . H 6 HOH P 8 108 132 HOH HOH . H 6 HOH P 9 109 68 HOH HOH . H 6 HOH P 10 110 50 HOH HOH . H 6 HOH P 11 111 92 HOH HOH . H 6 HOH P 12 112 85 HOH HOH . H 6 HOH P 13 113 108 HOH HOH . H 6 HOH P 14 114 112 HOH HOH . H 6 HOH P 15 115 63 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 19.587 _atom_site.Cartn_y -39.509 _atom_site.Cartn_z 4.232 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #