data_8G8O # _model_server_result.job_id IXkq7fR6AA38y9vHOeCueQ _model_server_result.datetime_utc '2025-01-10 16:07:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 8G8O # _exptl.entry_id 8G8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.528 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-{5-methyl-2-[(3-methyl-1,2-thiazol-5-yl)amino]pyrimidin-4-yl}-3-(4-methylpiperazin-1-yl)azetidin-3-yl]acetonitrile' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.53 _cell.angle_gamma 90 _cell.entry_id 8G8O _cell.length_a 36.58 _cell.length_b 179.56 _cell.length_c 52.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 192 A GLU 1006 1_555 A N PTR 193 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C PTR 193 A PTR 1007 1_555 A N PTR 194 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C PTR 194 A PTR 1008 1_555 A N LYS 195 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 B C GLU 192 B GLU 1006 1_555 B N PTR 193 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale5 B C PTR 193 B PTR 1007 1_555 B N PTR 194 B PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 B C PTR 194 B PTR 1008 1_555 B N LYS 195 B LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C19 H26 N8 S' _chem_comp.formula_weight 398.528 _chem_comp.id YT0 _chem_comp.mon_nstd_flag . _chem_comp.name '[1-{5-methyl-2-[(3-methyl-1,2-thiazol-5-yl)amino]pyrimidin-4-yl}-3-(4-methylpiperazin-1-yl)azetidin-3-yl]acetonitrile' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N6 YT0 sing 423 n n N6 C15 YT0 sing 424 n n N6 C17 YT0 sing 425 n n C15 C14 YT0 sing 426 n n N4 C13 YT0 trip 427 n n C14 N5 YT0 sing 428 n n C13 C12 YT0 sing 429 n n C12 C11 YT0 sing 430 n n C17 C18 YT0 sing 431 n n C18 N5 YT0 sing 432 n n N5 C11 YT0 sing 433 n n C11 C19 YT0 sing 434 n n C11 C10 YT0 sing 435 n n C19 N3 YT0 sing 436 n n C10 N3 YT0 sing 437 n n N3 C9 YT0 sing 438 n n C8 C7 YT0 sing 439 n n C9 C7 YT0 doub 440 n y C9 N7 YT0 sing 441 n y C7 C6 YT0 sing 442 n y N7 C5 YT0 doub 443 n y S1 N8 YT0 sing 444 n y S1 C4 YT0 sing 445 n y C6 N2 YT0 doub 446 n y C5 N2 YT0 sing 447 n y C5 N1 YT0 sing 448 n n N8 C2 YT0 doub 449 n y C4 N1 YT0 sing 450 n n C4 C3 YT0 doub 451 n y C2 C3 YT0 sing 452 n y C2 C1 YT0 sing 453 n n C1 H1 YT0 sing 454 n n C1 H2 YT0 sing 455 n n C1 H3 YT0 sing 456 n n C3 H4 YT0 sing 457 n n C6 H5 YT0 sing 458 n n N1 H6 YT0 sing 459 n n C8 H7 YT0 sing 460 n n C8 H8 YT0 sing 461 n n C8 H9 YT0 sing 462 n n C10 H10 YT0 sing 463 n n C10 H11 YT0 sing 464 n n C12 H12 YT0 sing 465 n n C12 H13 YT0 sing 466 n n C14 H14 YT0 sing 467 n n C14 H15 YT0 sing 468 n n C15 H16 YT0 sing 469 n n C15 H17 YT0 sing 470 n n C16 H18 YT0 sing 471 n n C16 H19 YT0 sing 472 n n C16 H20 YT0 sing 473 n n C17 H21 YT0 sing 474 n n C17 H22 YT0 sing 475 n n C18 H23 YT0 sing 476 n n C18 H24 YT0 sing 477 n n C19 H25 YT0 sing 478 n n C19 H26 YT0 sing 479 n n # _atom_sites.entry_id 8G8O _atom_sites.fract_transf_matrix[1][1] 0.027337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010237 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YT0 A 1 1201 1201 YT0 314 . D 3 DMS A 1 1202 1202 DMS DMS . E 2 YT0 B 1 1201 1201 YT0 314 . F 4 EDO B 1 1202 1202 EDO EDO . G 5 HOH A 1 1301 59 HOH HOH . G 5 HOH A 2 1302 41 HOH HOH . G 5 HOH A 3 1303 16 HOH HOH . G 5 HOH A 4 1304 113 HOH HOH . G 5 HOH A 5 1305 29 HOH HOH . G 5 HOH A 6 1306 7 HOH HOH . G 5 HOH A 7 1307 104 HOH HOH . G 5 HOH A 8 1308 103 HOH HOH . G 5 HOH A 9 1309 18 HOH HOH . G 5 HOH A 10 1310 35 HOH HOH . G 5 HOH A 11 1311 80 HOH HOH . G 5 HOH A 12 1312 70 HOH HOH . G 5 HOH A 13 1313 11 HOH HOH . G 5 HOH A 14 1314 42 HOH HOH . G 5 HOH A 15 1315 4 HOH HOH . G 5 HOH A 16 1316 74 HOH HOH . G 5 HOH A 17 1317 14 HOH HOH . G 5 HOH A 18 1318 26 HOH HOH . G 5 HOH A 19 1319 95 HOH HOH . G 5 HOH A 20 1320 86 HOH HOH . G 5 HOH A 21 1321 23 HOH HOH . G 5 HOH A 22 1322 112 HOH HOH . G 5 HOH A 23 1323 46 HOH HOH . G 5 HOH A 24 1324 20 HOH HOH . G 5 HOH A 25 1325 38 HOH HOH . G 5 HOH A 26 1326 99 HOH HOH . G 5 HOH A 27 1327 75 HOH HOH . G 5 HOH A 28 1328 37 HOH HOH . G 5 HOH A 29 1329 40 HOH HOH . G 5 HOH A 30 1330 33 HOH HOH . G 5 HOH A 31 1331 44 HOH HOH . G 5 HOH A 32 1332 17 HOH HOH . G 5 HOH A 33 1333 65 HOH HOH . G 5 HOH A 34 1334 81 HOH HOH . G 5 HOH A 35 1335 3 HOH HOH . G 5 HOH A 36 1336 2 HOH HOH . G 5 HOH A 37 1337 9 HOH HOH . G 5 HOH A 38 1338 68 HOH HOH . G 5 HOH A 39 1339 84 HOH HOH . G 5 HOH A 40 1340 61 HOH HOH . G 5 HOH A 41 1341 67 HOH HOH . G 5 HOH A 42 1342 51 HOH HOH . G 5 HOH A 43 1343 105 HOH HOH . G 5 HOH A 44 1344 64 HOH HOH . G 5 HOH A 45 1345 27 HOH HOH . G 5 HOH A 46 1346 19 HOH HOH . G 5 HOH A 47 1347 45 HOH HOH . G 5 HOH A 48 1348 85 HOH HOH . G 5 HOH A 49 1349 24 HOH HOH . G 5 HOH A 50 1350 108 HOH HOH . G 5 HOH A 51 1351 25 HOH HOH . G 5 HOH A 52 1352 10 HOH HOH . G 5 HOH A 53 1353 76 HOH HOH . G 5 HOH A 54 1354 52 HOH HOH . G 5 HOH A 55 1355 110 HOH HOH . G 5 HOH A 56 1356 79 HOH HOH . H 5 HOH B 1 1301 43 HOH HOH . H 5 HOH B 2 1302 48 HOH HOH . H 5 HOH B 3 1303 60 HOH HOH . H 5 HOH B 4 1304 58 HOH HOH . H 5 HOH B 5 1305 83 HOH HOH . H 5 HOH B 6 1306 98 HOH HOH . H 5 HOH B 7 1307 94 HOH HOH . H 5 HOH B 8 1308 96 HOH HOH . H 5 HOH B 9 1309 32 HOH HOH . H 5 HOH B 10 1310 34 HOH HOH . H 5 HOH B 11 1311 53 HOH HOH . H 5 HOH B 12 1312 39 HOH HOH . H 5 HOH B 13 1313 47 HOH HOH . H 5 HOH B 14 1314 56 HOH HOH . H 5 HOH B 15 1315 73 HOH HOH . H 5 HOH B 16 1316 50 HOH HOH . H 5 HOH B 17 1317 89 HOH HOH . H 5 HOH B 18 1318 30 HOH HOH . H 5 HOH B 19 1319 93 HOH HOH . H 5 HOH B 20 1320 28 HOH HOH . H 5 HOH B 21 1321 31 HOH HOH . H 5 HOH B 22 1322 78 HOH HOH . H 5 HOH B 23 1323 13 HOH HOH . H 5 HOH B 24 1324 55 HOH HOH . H 5 HOH B 25 1325 57 HOH HOH . H 5 HOH B 26 1326 5 HOH HOH . H 5 HOH B 27 1327 1 HOH HOH . H 5 HOH B 28 1328 69 HOH HOH . H 5 HOH B 29 1329 66 HOH HOH . H 5 HOH B 30 1330 97 HOH HOH . H 5 HOH B 31 1331 22 HOH HOH . H 5 HOH B 32 1332 71 HOH HOH . H 5 HOH B 33 1333 36 HOH HOH . H 5 HOH B 34 1334 82 HOH HOH . H 5 HOH B 35 1335 15 HOH HOH . H 5 HOH B 36 1336 63 HOH HOH . H 5 HOH B 37 1337 92 HOH HOH . H 5 HOH B 38 1338 100 HOH HOH . H 5 HOH B 39 1339 87 HOH HOH . H 5 HOH B 40 1340 72 HOH HOH . H 5 HOH B 41 1341 21 HOH HOH . H 5 HOH B 42 1342 62 HOH HOH . H 5 HOH B 43 1343 101 HOH HOH . H 5 HOH B 44 1344 54 HOH HOH . H 5 HOH B 45 1345 12 HOH HOH . H 5 HOH B 46 1346 77 HOH HOH . H 5 HOH B 47 1347 49 HOH HOH . H 5 HOH B 48 1348 91 HOH HOH . H 5 HOH B 49 1349 90 HOH HOH . H 5 HOH B 50 1350 8 HOH HOH . H 5 HOH B 51 1351 109 HOH HOH . H 5 HOH B 52 1352 6 HOH HOH . H 5 HOH B 53 1353 106 HOH HOH . H 5 HOH B 54 1354 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YT0 . . . C 2 18.692 16.956 22.025 1 34.62 ? C1 YT0 1201 A 1 HETATM 2 C C2 YT0 . . . C 2 18.154 18.072 21.186 1 35.55 ? C2 YT0 1201 A 1 HETATM 3 C C3 YT0 . . . C 2 17 18.853 21.433 1 34.88 ? C3 YT0 1201 A 1 HETATM 4 C C4 YT0 . . . C 2 16.892 19.917 20.608 1 35.94 ? C4 YT0 1201 A 1 HETATM 5 C C5 YT0 . . . C 2 15.786 22.04 20.028 1 37.16 ? C5 YT0 1201 A 1 HETATM 6 C C6 YT0 . . . C 2 14.677 24.028 19.795 1 36.22 ? C6 YT0 1201 A 1 HETATM 7 C C7 YT0 . . . C 2 15.49 24.406 18.752 1 40.56 ? C7 YT0 1201 A 1 HETATM 8 N N1 YT0 . . . C 2 15.89 20.837 20.692 1 39.7 ? N1 YT0 1201 A 1 HETATM 9 C C8 YT0 . . . C 2 15.275 25.755 18.112 1 46.33 ? C8 YT0 1201 A 1 HETATM 10 C C9 YT0 . . . C 2 16.502 23.485 18.378 1 34.48 ? C9 YT0 1201 A 1 HETATM 11 C C10 YT0 . . . C 2 18.464 22.804 16.823 1 35.51 ? C10 YT0 1201 A 1 HETATM 12 C C11 YT0 . . . C 2 18.309 23.522 15.447 1 35.62 ? C11 YT0 1201 A 1 HETATM 13 C C12 YT0 . . . C 2 17.767 22.568 14.398 1 35.26 ? C12 YT0 1201 A 1 HETATM 14 C C13 YT0 . . . C 2 16.321 22.588 14.195 1 35.36 ? C13 YT0 1201 A 1 HETATM 15 C C14 YT0 . . . C 2 19.631 24.996 13.994 1 36.64 ? C14 YT0 1201 A 1 HETATM 16 C C15 YT0 . . . C 2 20.991 25.645 13.843 1 37.41 ? C15 YT0 1201 A 1 HETATM 17 N N2 YT0 . . . C 2 14.807 22.865 20.439 1 34.71 ? N2 YT0 1201 A 1 HETATM 18 C C16 YT0 . . . C 2 23.327 25.27 13.439 1 42.19 ? C16 YT0 1201 A 1 HETATM 19 C C17 YT0 . . . C 2 22.026 23.607 14.561 1 31.81 ? C17 YT0 1201 A 1 HETATM 20 C C18 YT0 . . . C 2 20.667 22.981 14.778 1 30.83 ? C18 YT0 1201 A 1 HETATM 21 C C19 YT0 . . . C 2 17.267 24.561 16.1 1 41.6 ? C19 YT0 1201 A 1 HETATM 22 N N3 YT0 . . . C 2 17.374 23.682 17.273 1 39.33 ? N3 YT0 1201 A 1 HETATM 23 N N4 YT0 . . . C 2 15.194 22.579 13.963 1 35.36 ? N4 YT0 1201 A 1 HETATM 24 N N5 YT0 . . . C 2 19.668 24.019 15.091 1 36.85 ? N5 YT0 1201 A 1 HETATM 25 N N6 YT0 . . . C 2 22.006 24.641 13.529 1 38.27 ? N6 YT0 1201 A 1 HETATM 26 N N7 YT0 . . . C 2 16.642 22.316 19.023 1 33.2 ? N7 YT0 1201 A 1 HETATM 27 S S1 YT0 . . . C 2 18.115 19.828 19.398 1 39.57 ? S1 YT0 1201 A 1 HETATM 28 N N8 YT0 . . . C 2 18.749 18.406 20.036 1 36.54 ? N8 YT0 1201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 28 #