data_8G8O
#
_model_server_result.job_id            OPdrNbWW1Z9MHHTbvu_qlw 
_model_server_result.datetime_utc      '2025-01-10 15:41:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1202}' 
#
_entry.id    8G8O 
#
_exptl.entry_id    8G8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.53 
_cell.angle_gamma         90 
_cell.entry_id            8G8O 
_cell.length_a            36.58 
_cell.length_b            179.56 
_cell.length_c            52.21 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 192 A GLU 1006 1_555 A N PTR 193 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 A C PTR 193 A PTR 1007 1_555 A N PTR 194 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C PTR 194 A PTR 1008 1_555 A N LYS 195 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 B C GLU 192 B GLU 1006 1_555 B N PTR 193 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale5 B C PTR 193 B PTR 1007 1_555 B N PTR 194 B PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale6 B C PTR 194 B PTR 1008 1_555 B N LYS 195 B LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     8G8O 
_atom_sites.fract_transf_matrix[1][1]    0.027337 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.010237 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YT0 A 1 1201 1201 YT0 314 . 
D 3 DMS A 1 1202 1202 DMS DMS . 
E 2 YT0 B 1 1201 1201 YT0 314 . 
F 4 EDO B 1 1202 1202 EDO EDO . 
G 5 HOH A 1 1301 59 HOH HOH . 
G 5 HOH A 2 1302 41 HOH HOH . 
G 5 HOH A 3 1303 16 HOH HOH . 
G 5 HOH A 4 1304 113 HOH HOH . 
G 5 HOH A 5 1305 29 HOH HOH . 
G 5 HOH A 6 1306 7 HOH HOH . 
G 5 HOH A 7 1307 104 HOH HOH . 
G 5 HOH A 8 1308 103 HOH HOH . 
G 5 HOH A 9 1309 18 HOH HOH . 
G 5 HOH A 10 1310 35 HOH HOH . 
G 5 HOH A 11 1311 80 HOH HOH . 
G 5 HOH A 12 1312 70 HOH HOH . 
G 5 HOH A 13 1313 11 HOH HOH . 
G 5 HOH A 14 1314 42 HOH HOH . 
G 5 HOH A 15 1315 4 HOH HOH . 
G 5 HOH A 16 1316 74 HOH HOH . 
G 5 HOH A 17 1317 14 HOH HOH . 
G 5 HOH A 18 1318 26 HOH HOH . 
G 5 HOH A 19 1319 95 HOH HOH . 
G 5 HOH A 20 1320 86 HOH HOH . 
G 5 HOH A 21 1321 23 HOH HOH . 
G 5 HOH A 22 1322 112 HOH HOH . 
G 5 HOH A 23 1323 46 HOH HOH . 
G 5 HOH A 24 1324 20 HOH HOH . 
G 5 HOH A 25 1325 38 HOH HOH . 
G 5 HOH A 26 1326 99 HOH HOH . 
G 5 HOH A 27 1327 75 HOH HOH . 
G 5 HOH A 28 1328 37 HOH HOH . 
G 5 HOH A 29 1329 40 HOH HOH . 
G 5 HOH A 30 1330 33 HOH HOH . 
G 5 HOH A 31 1331 44 HOH HOH . 
G 5 HOH A 32 1332 17 HOH HOH . 
G 5 HOH A 33 1333 65 HOH HOH . 
G 5 HOH A 34 1334 81 HOH HOH . 
G 5 HOH A 35 1335 3 HOH HOH . 
G 5 HOH A 36 1336 2 HOH HOH . 
G 5 HOH A 37 1337 9 HOH HOH . 
G 5 HOH A 38 1338 68 HOH HOH . 
G 5 HOH A 39 1339 84 HOH HOH . 
G 5 HOH A 40 1340 61 HOH HOH . 
G 5 HOH A 41 1341 67 HOH HOH . 
G 5 HOH A 42 1342 51 HOH HOH . 
G 5 HOH A 43 1343 105 HOH HOH . 
G 5 HOH A 44 1344 64 HOH HOH . 
G 5 HOH A 45 1345 27 HOH HOH . 
G 5 HOH A 46 1346 19 HOH HOH . 
G 5 HOH A 47 1347 45 HOH HOH . 
G 5 HOH A 48 1348 85 HOH HOH . 
G 5 HOH A 49 1349 24 HOH HOH . 
G 5 HOH A 50 1350 108 HOH HOH . 
G 5 HOH A 51 1351 25 HOH HOH . 
G 5 HOH A 52 1352 10 HOH HOH . 
G 5 HOH A 53 1353 76 HOH HOH . 
G 5 HOH A 54 1354 52 HOH HOH . 
G 5 HOH A 55 1355 110 HOH HOH . 
G 5 HOH A 56 1356 79 HOH HOH . 
H 5 HOH B 1 1301 43 HOH HOH . 
H 5 HOH B 2 1302 48 HOH HOH . 
H 5 HOH B 3 1303 60 HOH HOH . 
H 5 HOH B 4 1304 58 HOH HOH . 
H 5 HOH B 5 1305 83 HOH HOH . 
H 5 HOH B 6 1306 98 HOH HOH . 
H 5 HOH B 7 1307 94 HOH HOH . 
H 5 HOH B 8 1308 96 HOH HOH . 
H 5 HOH B 9 1309 32 HOH HOH . 
H 5 HOH B 10 1310 34 HOH HOH . 
H 5 HOH B 11 1311 53 HOH HOH . 
H 5 HOH B 12 1312 39 HOH HOH . 
H 5 HOH B 13 1313 47 HOH HOH . 
H 5 HOH B 14 1314 56 HOH HOH . 
H 5 HOH B 15 1315 73 HOH HOH . 
H 5 HOH B 16 1316 50 HOH HOH . 
H 5 HOH B 17 1317 89 HOH HOH . 
H 5 HOH B 18 1318 30 HOH HOH . 
H 5 HOH B 19 1319 93 HOH HOH . 
H 5 HOH B 20 1320 28 HOH HOH . 
H 5 HOH B 21 1321 31 HOH HOH . 
H 5 HOH B 22 1322 78 HOH HOH . 
H 5 HOH B 23 1323 13 HOH HOH . 
H 5 HOH B 24 1324 55 HOH HOH . 
H 5 HOH B 25 1325 57 HOH HOH . 
H 5 HOH B 26 1326 5 HOH HOH . 
H 5 HOH B 27 1327 1 HOH HOH . 
H 5 HOH B 28 1328 69 HOH HOH . 
H 5 HOH B 29 1329 66 HOH HOH . 
H 5 HOH B 30 1330 97 HOH HOH . 
H 5 HOH B 31 1331 22 HOH HOH . 
H 5 HOH B 32 1332 71 HOH HOH . 
H 5 HOH B 33 1333 36 HOH HOH . 
H 5 HOH B 34 1334 82 HOH HOH . 
H 5 HOH B 35 1335 15 HOH HOH . 
H 5 HOH B 36 1336 63 HOH HOH . 
H 5 HOH B 37 1337 92 HOH HOH . 
H 5 HOH B 38 1338 100 HOH HOH . 
H 5 HOH B 39 1339 87 HOH HOH . 
H 5 HOH B 40 1340 72 HOH HOH . 
H 5 HOH B 41 1341 21 HOH HOH . 
H 5 HOH B 42 1342 62 HOH HOH . 
H 5 HOH B 43 1343 101 HOH HOH . 
H 5 HOH B 44 1344 54 HOH HOH . 
H 5 HOH B 45 1345 12 HOH HOH . 
H 5 HOH B 46 1346 77 HOH HOH . 
H 5 HOH B 47 1347 49 HOH HOH . 
H 5 HOH B 48 1348 91 HOH HOH . 
H 5 HOH B 49 1349 90 HOH HOH . 
H 5 HOH B 50 1350 8 HOH HOH . 
H 5 HOH B 51 1351 109 HOH HOH . 
H 5 HOH B 52 1352 6 HOH HOH . 
H 5 HOH B 53 1353 106 HOH HOH . 
H 5 HOH B 54 1354 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 3 1.918 30.24 -2.058 1 33.31 ? S DMS 1202 A 1 
HETATM 2 O O DMS . . . D 3 1.339 30.066 -3.452 1 32.24 ? O DMS 1202 A 1 
HETATM 3 C C1 DMS . . . D 3 3.225 31.461 -2.178 1 32.72 ? C1 DMS 1202 A 1 
HETATM 4 C C2 DMS . . . D 3 2.649 28.693 -1.578 1 26.85 ? C2 DMS 1202 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           605 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#