data_8G8P # _model_server_result.job_id OaXZ6nm_6jQzwc7KcRcVeA _model_server_result.datetime_utc '2024-12-18 20:25:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 8G8P # _exptl.entry_id 8G8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G8P _cell.length_a 68.238 _cell.length_b 68.238 _cell.length_c 91.807 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 0 0 183.614 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 246 AAA CYS 244 1_555 A SG CYS 246 AAA CYS 244 5_557 ? B ? ? B ? ? ? ? ? ? ? 2.77 ? disulf ? disulf2 A SG CYS 246 AAA CYS 244 1_555 A SG CYS 250 AAA CYS 248 5_557 ? A ? ? A ? ? ? ? ? ? ? 2.467 ? disulf ? disulf3 A SG CYS 246 AAA CYS 244 1_555 A SG CYS 250 AAA CYS 248 5_557 ? B ? ? B ? ? ? ? ? ? ? 2.187 ? metalc ? metalc1 A OD2 ASP 111 AAA ASP 109 1_555 F MN MN . AAA MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A OD1 ASP 111 AAA ASP 109 1_555 G NA NA . AAA NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A OD2 ASP 111 AAA ASP 109 1_555 I MN MN . AAA MN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A OD1 ASP 152 AAA ASP 150 1_555 F MN MN . AAA MN 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 A OD1 ASP 152 AAA ASP 150 1_555 F MN MN . AAA MN 305 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc6 A OD1 ASP 152 AAA ASP 150 1_555 I MN MN . AAA MN 308 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc7 A OD1 ASP 152 AAA ASP 150 1_555 I MN MN . AAA MN 308 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 A OD2 ASP 152 AAA ASP 150 1_555 I MN MN . AAA MN 308 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc9 A OG1 THR 153 AAA THR 151 1_555 E MN MN . AAA MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc10 A OE1 GLU 210 AAA GLU 208 1_555 E MN MN . AAA MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc11 C O3G GTP . AAA GTP 302 1_555 E MN MN . AAA MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc12 C O2B GTP . AAA GTP 302 1_555 E MN MN . AAA MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc13 C O1A GTP . AAA GTP 302 1_555 E MN MN . AAA MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc14 C PG GTP . AAA GTP 302 1_555 F MN MN . AAA MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc15 C O3B GTP . AAA GTP 302 1_555 F MN MN . AAA MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc16 C O2G GTP . AAA GTP 302 1_555 I MN MN . AAA MN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc17 D O1B GDP . AAA GDP 303 1_555 E MN MN . AAA MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc18 D O1A GDP . AAA GDP 303 1_555 E MN MN . AAA MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc19 D O3B GDP . AAA GDP 303 1_555 F MN MN . AAA MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc20 E MN MN . AAA MN 304 1_555 J O HOH . AAA HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc21 E MN MN . AAA MN 304 1_555 J O HOH . AAA HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc22 F MN MN . AAA MN 305 1_555 J O HOH . AAA HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc23 F MN MN . AAA MN 305 1_555 J O HOH . AAA HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc24 F MN MN . AAA MN 305 1_555 J O HOH . AAA HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc25 G NA NA . AAA NA 306 1_555 J O HOH . AAA HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc26 G NA NA . AAA NA 306 1_555 J O HOH . AAA HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc27 G NA NA . AAA NA 306 1_555 J O HOH . AAA HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc28 G NA NA . AAA NA 306 1_555 J O HOH . AAA HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc29 I MN MN . AAA MN 308 1_555 J O HOH . AAA HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc30 I MN MN . AAA MN 308 1_555 J O HOH . AAA HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G8P _atom_sites.fract_transf_matrix[1][1] 0.014655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F42 AAA 1 301 301 F42 F42 . C 3 GTP AAA 1 302 303 GTP GTP . D 4 GDP AAA 1 303 304 GDP GDP . E 5 MN AAA 1 304 1 MN MN . F 5 MN AAA 1 305 2 MN MN . G 6 NA AAA 1 306 3 NA NA . H 7 SO4 AAA 1 307 1 SO4 SO4 . I 5 MN AAA 1 308 1 MN MN . J 8 HOH AAA 1 401 141 HOH HOH . J 8 HOH AAA 2 402 151 HOH HOH . J 8 HOH AAA 3 403 8 HOH HOH . J 8 HOH AAA 4 404 9 HOH HOH . J 8 HOH AAA 5 405 96 HOH HOH . J 8 HOH AAA 6 406 145 HOH HOH . J 8 HOH AAA 7 407 152 HOH HOH . J 8 HOH AAA 8 408 85 HOH HOH . J 8 HOH AAA 9 409 4 HOH HOH . J 8 HOH AAA 10 410 38 HOH HOH . J 8 HOH AAA 11 411 58 HOH HOH . J 8 HOH AAA 12 412 70 HOH HOH . J 8 HOH AAA 13 413 87 HOH HOH . J 8 HOH AAA 14 414 107 HOH HOH . J 8 HOH AAA 15 415 114 HOH HOH . J 8 HOH AAA 16 416 103 HOH HOH . J 8 HOH AAA 17 417 27 HOH HOH . J 8 HOH AAA 18 418 7 HOH HOH . J 8 HOH AAA 19 419 69 HOH HOH . J 8 HOH AAA 20 420 74 HOH HOH . J 8 HOH AAA 21 421 72 HOH HOH . J 8 HOH AAA 22 422 71 HOH HOH . J 8 HOH AAA 23 423 21 HOH HOH . J 8 HOH AAA 24 424 144 HOH HOH . J 8 HOH AAA 25 425 36 HOH HOH . J 8 HOH AAA 26 426 76 HOH HOH . J 8 HOH AAA 27 427 33 HOH HOH . J 8 HOH AAA 28 428 25 HOH HOH . J 8 HOH AAA 29 429 18 HOH HOH . J 8 HOH AAA 30 430 15 HOH HOH . J 8 HOH AAA 31 431 5 HOH HOH . J 8 HOH AAA 32 432 49 HOH HOH . J 8 HOH AAA 33 433 97 HOH HOH . J 8 HOH AAA 34 434 63 HOH HOH . J 8 HOH AAA 35 435 11 HOH HOH . J 8 HOH AAA 36 436 113 HOH HOH . J 8 HOH AAA 37 437 91 HOH HOH . J 8 HOH AAA 38 438 95 HOH HOH . J 8 HOH AAA 39 439 148 HOH HOH . J 8 HOH AAA 40 440 88 HOH HOH . J 8 HOH AAA 41 441 17 HOH HOH . J 8 HOH AAA 42 442 146 HOH HOH . J 8 HOH AAA 43 443 75 HOH HOH . J 8 HOH AAA 44 444 10 HOH HOH . J 8 HOH AAA 45 445 65 HOH HOH . J 8 HOH AAA 46 446 19 HOH HOH . J 8 HOH AAA 47 447 29 HOH HOH . J 8 HOH AAA 48 448 73 HOH HOH . J 8 HOH AAA 49 449 35 HOH HOH . J 8 HOH AAA 50 450 45 HOH HOH . J 8 HOH AAA 51 451 26 HOH HOH . J 8 HOH AAA 52 452 1 HOH HOH . J 8 HOH AAA 53 453 30 HOH HOH . J 8 HOH AAA 54 454 106 HOH HOH . J 8 HOH AAA 55 455 52 HOH HOH . J 8 HOH AAA 56 456 98 HOH HOH . J 8 HOH AAA 57 457 102 HOH HOH . J 8 HOH AAA 58 458 81 HOH HOH . J 8 HOH AAA 59 459 12 HOH HOH . J 8 HOH AAA 60 460 137 HOH HOH . J 8 HOH AAA 61 461 46 HOH HOH . J 8 HOH AAA 62 462 79 HOH HOH . J 8 HOH AAA 63 463 66 HOH HOH . J 8 HOH AAA 64 464 122 HOH HOH . J 8 HOH AAA 65 465 110 HOH HOH . J 8 HOH AAA 66 466 47 HOH HOH . J 8 HOH AAA 67 467 53 HOH HOH . J 8 HOH AAA 68 468 101 HOH HOH . J 8 HOH AAA 69 469 99 HOH HOH . J 8 HOH AAA 70 470 14 HOH HOH . J 8 HOH AAA 71 471 28 HOH HOH . J 8 HOH AAA 72 472 68 HOH HOH . J 8 HOH AAA 73 473 149 HOH HOH . J 8 HOH AAA 74 474 123 HOH HOH . J 8 HOH AAA 75 475 86 HOH HOH . J 8 HOH AAA 76 476 90 HOH HOH . J 8 HOH AAA 77 477 150 HOH HOH . J 8 HOH AAA 78 478 32 HOH HOH . J 8 HOH AAA 79 479 130 HOH HOH . J 8 HOH AAA 80 480 16 HOH HOH . J 8 HOH AAA 81 481 64 HOH HOH . J 8 HOH AAA 82 482 89 HOH HOH . J 8 HOH AAA 83 483 84 HOH HOH . J 8 HOH AAA 84 484 129 HOH HOH . J 8 HOH AAA 85 485 39 HOH HOH . J 8 HOH AAA 86 486 136 HOH HOH . J 8 HOH AAA 87 487 20 HOH HOH . J 8 HOH AAA 88 488 13 HOH HOH . J 8 HOH AAA 89 489 100 HOH HOH . J 8 HOH AAA 90 490 43 HOH HOH . J 8 HOH AAA 91 491 44 HOH HOH . J 8 HOH AAA 92 492 115 HOH HOH . J 8 HOH AAA 93 493 92 HOH HOH . J 8 HOH AAA 94 494 67 HOH HOH . J 8 HOH AAA 95 495 24 HOH HOH . J 8 HOH AAA 96 496 147 HOH HOH . J 8 HOH AAA 97 497 82 HOH HOH . J 8 HOH AAA 98 498 77 HOH HOH . J 8 HOH AAA 99 499 54 HOH HOH . J 8 HOH AAA 100 500 105 HOH HOH . J 8 HOH AAA 101 501 83 HOH HOH . J 8 HOH AAA 102 502 117 HOH HOH . J 8 HOH AAA 103 503 111 HOH HOH . J 8 HOH AAA 104 504 142 HOH HOH . J 8 HOH AAA 105 505 80 HOH HOH . J 8 HOH AAA 106 506 2 HOH HOH . J 8 HOH AAA 107 507 140 HOH HOH . J 8 HOH AAA 108 508 139 HOH HOH . J 8 HOH AAA 109 509 59 HOH HOH . J 8 HOH AAA 110 510 55 HOH HOH . J 8 HOH AAA 111 511 143 HOH HOH . J 8 HOH AAA 112 512 125 HOH HOH . J 8 HOH AAA 113 513 134 HOH HOH . J 8 HOH AAA 114 514 41 HOH HOH . J 8 HOH AAA 115 515 62 HOH HOH . J 8 HOH AAA 116 516 128 HOH HOH . J 8 HOH AAA 117 517 34 HOH HOH . J 8 HOH AAA 118 518 22 HOH HOH . J 8 HOH AAA 119 519 37 HOH HOH . J 8 HOH AAA 120 520 56 HOH HOH . J 8 HOH AAA 121 521 57 HOH HOH . J 8 HOH AAA 122 522 93 HOH HOH . J 8 HOH AAA 123 523 135 HOH HOH . J 8 HOH AAA 124 524 31 HOH HOH . J 8 HOH AAA 125 525 23 HOH HOH . J 8 HOH AAA 126 526 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 15.084 _atom_site.Cartn_y 26.32 _atom_site.Cartn_z 93.73 _atom_site.occupancy 0.6 _atom_site.B_iso_or_equiv 25.78 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 305 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #