data_8G8V # _model_server_result.job_id qZpkcrWA7U4shJp87_hriA _model_server_result.datetime_utc '2024-12-22 12:43:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 8G8V # _exptl.entry_id 8G8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 80.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFITE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8G8V _cell.length_a 116.499 _cell.length_b 116.499 _cell.length_c 70.806 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 23.602 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N ? 3 L N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 187 A LEU 153 1_555 A N CSD 188 A CSD 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CSD 188 A CSD 154 1_555 A N PRO 189 A PRO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A C PRO 189 A PRO 155 1_555 A N SNC 190 A SNC 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SNC 190 A SNC 156 1_555 A N SER 191 A SER 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 B C LEU 187 B LEU 153 1_555 B N CSD 188 B CSD 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C CSD 188 B CSD 154 1_555 B N PRO 189 B PRO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale7 B C PRO 189 B PRO 155 1_555 B N SNC 190 B SNC 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 B C SNC 190 B SNC 156 1_555 B N SER 191 B SER 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OE1 GLU 242 A GLU 208 1_555 K NA NA . B NA 301 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 C NA NA . A NA 301 5_555 B OE2 GLU 242 B GLU 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? # _chem_comp.formula 'O3 S -2' _chem_comp.formula_weight 80.063 _chem_comp.id SO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO3 doub 381 n n S O2 SO3 sing 382 n n S O3 SO3 sing 383 n n # _atom_sites.entry_id 8G8V _atom_sites.fract_transf_matrix[1][1] 0.008584 _atom_sites.fract_transf_matrix[1][2] 0.004956 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 1 NA NA . D 3 SO3 A 1 302 1 SO3 SO3 . E 4 PG4 A 1 303 2 PG4 PG4 . F 5 EDO A 1 304 3 EDO EDO . G 5 EDO A 1 305 4 EDO EDO . H 3 SO3 A 1 306 6 SO3 SO3 . I 5 EDO A 1 307 7 EDO EDO . J 5 EDO A 1 308 8 EDO EDO . K 2 NA B 1 301 2 NA NA . L 3 SO3 B 1 302 5 SO3 SO3 . M 6 PGE B 1 303 1 PGE PGE . N 5 EDO B 1 304 2 EDO EDO . O 5 EDO B 1 305 3 EDO EDO . P 3 SO3 B 1 306 4 SO3 SO3 . Q 3 SO3 B 1 307 5 SO3 SO3 . R 5 EDO B 1 308 6 EDO EDO . S 4 PG4 B 1 309 7 PG4 PG4 . T 7 HOH A 1 401 7 HOH HOH . T 7 HOH A 2 402 45 HOH HOH . T 7 HOH A 3 403 18 HOH HOH . T 7 HOH A 4 404 40 HOH HOH . T 7 HOH A 5 405 48 HOH HOH . T 7 HOH A 6 406 20 HOH HOH . T 7 HOH A 7 407 23 HOH HOH . T 7 HOH A 8 408 33 HOH HOH . T 7 HOH A 9 409 5 HOH HOH . T 7 HOH A 10 410 64 HOH HOH . T 7 HOH A 11 411 119 HOH HOH . T 7 HOH A 12 412 113 HOH HOH . T 7 HOH A 13 413 82 HOH HOH . T 7 HOH A 14 414 81 HOH HOH . T 7 HOH A 15 415 70 HOH HOH . T 7 HOH A 16 416 155 HOH HOH . T 7 HOH A 17 417 126 HOH HOH . T 7 HOH A 18 418 54 HOH HOH . T 7 HOH A 19 419 115 HOH HOH . T 7 HOH A 20 420 100 HOH HOH . T 7 HOH A 21 421 114 HOH HOH . T 7 HOH A 22 422 67 HOH HOH . T 7 HOH A 23 423 182 HOH HOH . T 7 HOH A 24 424 46 HOH HOH . T 7 HOH A 25 425 3 HOH HOH . T 7 HOH A 26 426 85 HOH HOH . T 7 HOH A 27 427 137 HOH HOH . T 7 HOH A 28 428 75 HOH HOH . T 7 HOH A 29 429 111 HOH HOH . T 7 HOH A 30 430 19 HOH HOH . T 7 HOH A 31 431 12 HOH HOH . T 7 HOH A 32 432 72 HOH HOH . T 7 HOH A 33 433 87 HOH HOH . T 7 HOH A 34 434 41 HOH HOH . T 7 HOH A 35 435 156 HOH HOH . T 7 HOH A 36 436 2 HOH HOH . T 7 HOH A 37 437 99 HOH HOH . T 7 HOH A 38 438 68 HOH HOH . T 7 HOH A 39 439 97 HOH HOH . T 7 HOH A 40 440 94 HOH HOH . T 7 HOH A 41 441 171 HOH HOH . T 7 HOH A 42 442 62 HOH HOH . T 7 HOH A 43 443 31 HOH HOH . T 7 HOH A 44 444 98 HOH HOH . T 7 HOH A 45 445 112 HOH HOH . T 7 HOH A 46 446 135 HOH HOH . T 7 HOH A 47 447 177 HOH HOH . T 7 HOH A 48 448 168 HOH HOH . T 7 HOH A 49 449 37 HOH HOH . T 7 HOH A 50 450 29 HOH HOH . T 7 HOH A 51 451 38 HOH HOH . T 7 HOH A 52 452 159 HOH HOH . T 7 HOH A 53 453 51 HOH HOH . T 7 HOH A 54 454 36 HOH HOH . T 7 HOH A 55 455 144 HOH HOH . T 7 HOH A 56 456 35 HOH HOH . T 7 HOH A 57 457 61 HOH HOH . T 7 HOH A 58 458 83 HOH HOH . T 7 HOH A 59 459 89 HOH HOH . T 7 HOH A 60 460 47 HOH HOH . T 7 HOH A 61 461 9 HOH HOH . T 7 HOH A 62 462 88 HOH HOH . T 7 HOH A 63 463 8 HOH HOH . T 7 HOH A 64 464 121 HOH HOH . T 7 HOH A 65 465 13 HOH HOH . T 7 HOH A 66 466 32 HOH HOH . T 7 HOH A 67 467 158 HOH HOH . T 7 HOH A 68 468 43 HOH HOH . T 7 HOH A 69 469 163 HOH HOH . T 7 HOH A 70 470 132 HOH HOH . T 7 HOH A 71 471 107 HOH HOH . T 7 HOH A 72 472 110 HOH HOH . T 7 HOH A 73 473 176 HOH HOH . T 7 HOH A 74 474 1 HOH HOH . T 7 HOH A 75 475 180 HOH HOH . T 7 HOH A 76 476 53 HOH HOH . T 7 HOH A 77 477 129 HOH HOH . T 7 HOH A 78 478 105 HOH HOH . T 7 HOH A 79 479 164 HOH HOH . T 7 HOH A 80 480 170 HOH HOH . T 7 HOH A 81 481 175 HOH HOH . T 7 HOH A 82 482 74 HOH HOH . T 7 HOH A 83 483 42 HOH HOH . T 7 HOH A 84 484 145 HOH HOH . T 7 HOH A 85 485 136 HOH HOH . T 7 HOH A 86 486 95 HOH HOH . T 7 HOH A 87 487 91 HOH HOH . T 7 HOH A 88 488 146 HOH HOH . T 7 HOH A 89 489 57 HOH HOH . T 7 HOH A 90 490 162 HOH HOH . T 7 HOH A 91 491 109 HOH HOH . T 7 HOH A 92 492 157 HOH HOH . T 7 HOH A 93 493 55 HOH HOH . T 7 HOH A 94 494 123 HOH HOH . T 7 HOH A 95 495 80 HOH HOH . T 7 HOH A 96 496 172 HOH HOH . T 7 HOH A 97 497 56 HOH HOH . T 7 HOH A 98 498 139 HOH HOH . T 7 HOH A 99 499 130 HOH HOH . T 7 HOH A 100 500 165 HOH HOH . T 7 HOH A 101 501 141 HOH HOH . T 7 HOH A 102 502 186 HOH HOH . T 7 HOH A 103 503 120 HOH HOH . T 7 HOH A 104 504 140 HOH HOH . T 7 HOH A 105 505 59 HOH HOH . T 7 HOH A 106 506 122 HOH HOH . T 7 HOH A 107 507 169 HOH HOH . T 7 HOH A 108 508 167 HOH HOH . U 7 HOH B 1 401 103 HOH HOH . U 7 HOH B 2 402 50 HOH HOH . U 7 HOH B 3 403 161 HOH HOH . U 7 HOH B 4 404 15 HOH HOH . U 7 HOH B 5 405 116 HOH HOH . U 7 HOH B 6 406 93 HOH HOH . U 7 HOH B 7 407 128 HOH HOH . U 7 HOH B 8 408 39 HOH HOH . U 7 HOH B 9 409 22 HOH HOH . U 7 HOH B 10 410 73 HOH HOH . U 7 HOH B 11 411 133 HOH HOH . U 7 HOH B 12 412 25 HOH HOH . U 7 HOH B 13 413 152 HOH HOH . U 7 HOH B 14 414 27 HOH HOH . U 7 HOH B 15 415 24 HOH HOH . U 7 HOH B 16 416 49 HOH HOH . U 7 HOH B 17 417 65 HOH HOH . U 7 HOH B 18 418 124 HOH HOH . U 7 HOH B 19 419 11 HOH HOH . U 7 HOH B 20 420 117 HOH HOH . U 7 HOH B 21 421 79 HOH HOH . U 7 HOH B 22 422 4 HOH HOH . U 7 HOH B 23 423 66 HOH HOH . U 7 HOH B 24 424 118 HOH HOH . U 7 HOH B 25 425 127 HOH HOH . U 7 HOH B 26 426 102 HOH HOH . U 7 HOH B 27 427 60 HOH HOH . U 7 HOH B 28 428 71 HOH HOH . U 7 HOH B 29 429 131 HOH HOH . U 7 HOH B 30 430 104 HOH HOH . U 7 HOH B 31 431 142 HOH HOH . U 7 HOH B 32 432 44 HOH HOH . U 7 HOH B 33 433 108 HOH HOH . U 7 HOH B 34 434 77 HOH HOH . U 7 HOH B 35 435 96 HOH HOH . U 7 HOH B 36 436 63 HOH HOH . U 7 HOH B 37 437 86 HOH HOH . U 7 HOH B 38 438 78 HOH HOH . U 7 HOH B 39 439 16 HOH HOH . U 7 HOH B 40 440 134 HOH HOH . U 7 HOH B 41 441 69 HOH HOH . U 7 HOH B 42 442 28 HOH HOH . U 7 HOH B 43 443 10 HOH HOH . U 7 HOH B 44 444 14 HOH HOH . U 7 HOH B 45 445 76 HOH HOH . U 7 HOH B 46 446 26 HOH HOH . U 7 HOH B 47 447 21 HOH HOH . U 7 HOH B 48 448 30 HOH HOH . U 7 HOH B 49 449 150 HOH HOH . U 7 HOH B 50 450 183 HOH HOH . U 7 HOH B 51 451 90 HOH HOH . U 7 HOH B 52 452 6 HOH HOH . U 7 HOH B 53 453 154 HOH HOH . U 7 HOH B 54 454 166 HOH HOH . U 7 HOH B 55 455 178 HOH HOH . U 7 HOH B 56 456 106 HOH HOH . U 7 HOH B 57 457 58 HOH HOH . U 7 HOH B 58 458 17 HOH HOH . U 7 HOH B 59 459 143 HOH HOH . U 7 HOH B 60 460 34 HOH HOH . U 7 HOH B 61 461 173 HOH HOH . U 7 HOH B 62 462 138 HOH HOH . U 7 HOH B 63 463 52 HOH HOH . U 7 HOH B 64 464 147 HOH HOH . U 7 HOH B 65 465 185 HOH HOH . U 7 HOH B 66 466 181 HOH HOH . U 7 HOH B 67 467 101 HOH HOH . U 7 HOH B 68 468 149 HOH HOH . U 7 HOH B 69 469 174 HOH HOH . U 7 HOH B 70 470 160 HOH HOH . U 7 HOH B 71 471 179 HOH HOH . U 7 HOH B 72 472 151 HOH HOH . U 7 HOH B 73 473 92 HOH HOH . U 7 HOH B 74 474 125 HOH HOH . U 7 HOH B 75 475 184 HOH HOH . U 7 HOH B 76 476 84 HOH HOH . U 7 HOH B 77 477 148 HOH HOH . U 7 HOH B 78 478 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO3 . . . H 3 -48.044 -3.466 -5.183 0.68 66.05 ? S SO3 306 A 1 HETATM 2 O O1 SO3 . . . H 3 -48.335 -2.003 -5.276 0.68 49.58 ? O1 SO3 306 A 1 HETATM 3 O O2 SO3 . . . H 3 -48.922 -4.082 -6.221 0.68 41.41 ? O2 SO3 306 A 1 HETATM 4 O O3 SO3 . . . H 3 -46.664 -3.599 -5.735 0.68 53.57 ? O3 SO3 306 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #