data_8G93 # _model_server_result.job_id AbyPcaOIdQnmaoPcDomMYg _model_server_result.datetime_utc '2024-12-21 16:38:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8G93 # _exptl.entry_id 8G93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G93 _cell.length_a 76.73 _cell.length_b 186.32 _cell.length_c 65.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 8G93 _atom_sites.fract_transf_matrix[1][1] 0.013033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 296 NAD NAD . D 3 YXW A 1 402 301 YXW PFE . E 2 NAD B 1 401 296 NAD NAD . F 3 YXW B 1 402 301 YXW PFE . G 4 HOH A 1 501 73 HOH HOH . G 4 HOH A 2 502 30 HOH HOH . G 4 HOH A 3 503 32 HOH HOH . G 4 HOH A 4 504 9 HOH HOH . G 4 HOH A 5 505 2 HOH HOH . G 4 HOH A 6 506 14 HOH HOH . G 4 HOH A 7 507 67 HOH HOH . G 4 HOH A 8 508 29 HOH HOH . G 4 HOH A 9 509 54 HOH HOH . G 4 HOH A 10 510 10 HOH HOH . G 4 HOH A 11 511 19 HOH HOH . G 4 HOH A 12 512 31 HOH HOH . G 4 HOH A 13 513 26 HOH HOH . G 4 HOH A 14 514 4 HOH HOH . G 4 HOH A 15 515 12 HOH HOH . G 4 HOH A 16 516 36 HOH HOH . G 4 HOH A 17 517 16 HOH HOH . G 4 HOH A 18 518 22 HOH HOH . G 4 HOH A 19 519 71 HOH HOH . G 4 HOH A 20 520 11 HOH HOH . G 4 HOH A 21 521 5 HOH HOH . G 4 HOH A 22 522 70 HOH HOH . G 4 HOH A 23 523 49 HOH HOH . G 4 HOH A 24 524 57 HOH HOH . G 4 HOH A 25 525 3 HOH HOH . G 4 HOH A 26 526 46 HOH HOH . G 4 HOH A 27 527 6 HOH HOH . G 4 HOH A 28 528 56 HOH HOH . G 4 HOH A 29 529 63 HOH HOH . G 4 HOH A 30 530 65 HOH HOH . G 4 HOH A 31 531 39 HOH HOH . G 4 HOH A 32 532 68 HOH HOH . G 4 HOH A 33 533 13 HOH HOH . G 4 HOH A 34 534 47 HOH HOH . G 4 HOH A 35 535 58 HOH HOH . G 4 HOH A 36 536 69 HOH HOH . G 4 HOH A 37 537 35 HOH HOH . G 4 HOH A 38 538 27 HOH HOH . G 4 HOH A 39 539 55 HOH HOH . G 4 HOH A 40 540 42 HOH HOH . G 4 HOH A 41 541 17 HOH HOH . G 4 HOH A 42 542 48 HOH HOH . G 4 HOH A 43 543 53 HOH HOH . G 4 HOH A 44 544 24 HOH HOH . G 4 HOH A 45 545 23 HOH HOH . G 4 HOH A 46 546 38 HOH HOH . G 4 HOH A 47 547 18 HOH HOH . G 4 HOH A 48 548 25 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 15 HOH HOH . H 4 HOH B 3 503 45 HOH HOH . H 4 HOH B 4 504 28 HOH HOH . H 4 HOH B 5 505 34 HOH HOH . H 4 HOH B 6 506 33 HOH HOH . H 4 HOH B 7 507 7 HOH HOH . H 4 HOH B 8 508 62 HOH HOH . H 4 HOH B 9 509 59 HOH HOH . H 4 HOH B 10 510 52 HOH HOH . H 4 HOH B 11 511 8 HOH HOH . H 4 HOH B 12 512 64 HOH HOH . H 4 HOH B 13 513 37 HOH HOH . H 4 HOH B 14 514 72 HOH HOH . H 4 HOH B 15 515 51 HOH HOH . H 4 HOH B 16 516 43 HOH HOH . H 4 HOH B 17 517 66 HOH HOH . H 4 HOH B 18 518 41 HOH HOH . H 4 HOH B 19 519 44 HOH HOH . H 4 HOH B 20 520 21 HOH HOH . H 4 HOH B 21 521 50 HOH HOH . H 4 HOH B 22 522 20 HOH HOH . H 4 HOH B 23 523 61 HOH HOH . H 4 HOH B 24 524 60 HOH HOH . H 4 HOH B 25 525 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 10.291 38.298 82.292 1 28.81 ? PA NAD 401 B 1 HETATM 2 O O1A NAD . . . E 2 9.098 37.742 82.977 1 24.25 ? O1A NAD 401 B 1 HETATM 3 O O2A NAD . . . E 2 9.986 39.359 81.241 1 26.44 ? O2A NAD 401 B 1 HETATM 4 O O5B NAD . . . E 2 11.257 38.904 83.413 1 33.22 ? O5B NAD 401 B 1 HETATM 5 C C5B NAD . . . E 2 12.677 39.089 83.278 1 32.11 ? C5B NAD 401 B 1 HETATM 6 C C4B NAD . . . E 2 13.057 40.075 84.354 1 28.62 ? C4B NAD 401 B 1 HETATM 7 O O4B NAD . . . E 2 14.41 40.534 84.144 1 29.38 ? O4B NAD 401 B 1 HETATM 8 C C3B NAD . . . E 2 12.168 41.327 84.421 1 25.17 ? C3B NAD 401 B 1 HETATM 9 O O3B NAD . . . E 2 11.542 41.505 85.677 1 25.91 ? O3B NAD 401 B 1 HETATM 10 C C2B NAD . . . E 2 13.114 42.471 84.051 1 26.07 ? C2B NAD 401 B 1 HETATM 11 O O2B NAD . . . E 2 12.861 43.705 84.705 1 26.89 ? O2B NAD 401 B 1 HETATM 12 C C1B NAD . . . E 2 14.463 41.907 84.457 1 26.29 ? C1B NAD 401 B 1 HETATM 13 N N9A NAD . . . E 2 15.589 42.517 83.762 1 28.32 ? N9A NAD 401 B 1 HETATM 14 C C8A NAD . . . E 2 15.705 42.808 82.426 1 28.73 ? C8A NAD 401 B 1 HETATM 15 N N7A NAD . . . E 2 16.774 43.505 82.121 1 29.09 ? N7A NAD 401 B 1 HETATM 16 C C5A NAD . . . E 2 17.413 43.677 83.339 1 26.99 ? C5A NAD 401 B 1 HETATM 17 C C6A NAD . . . E 2 18.569 44.386 83.716 1 25.44 ? C6A NAD 401 B 1 HETATM 18 N N6A NAD . . . E 2 19.319 45.089 82.868 1 20.73 ? N6A NAD 401 B 1 HETATM 19 N N1A NAD . . . E 2 18.911 44.385 85.027 1 24.84 ? N1A NAD 401 B 1 HETATM 20 C C2A NAD . . . E 2 18.137 43.724 85.893 1 22.78 ? C2A NAD 401 B 1 HETATM 21 N N3A NAD . . . E 2 17.019 43.035 85.661 1 23.09 ? N3A NAD 401 B 1 HETATM 22 C C4A NAD . . . E 2 16.703 43.056 84.358 1 27.33 ? C4A NAD 401 B 1 HETATM 23 O O3 NAD . . . E 2 11.072 37.111 81.571 1 32.31 ? O3 NAD 401 B 1 HETATM 24 P PN NAD . . . E 2 11.352 35.573 81.906 1 33.08 ? PN NAD 401 B 1 HETATM 25 O O1N NAD . . . E 2 11.056 35.302 83.329 1 36.41 ? O1N NAD 401 B 1 HETATM 26 O O2N NAD . . . E 2 10.695 34.753 80.868 1 32.31 ? O2N NAD 401 B 1 HETATM 27 O O5D NAD . . . E 2 12.914 35.502 81.624 1 32.81 ? O5D NAD 401 B 1 HETATM 28 C C5D NAD . . . E 2 13.872 35.201 82.66 1 30.45 ? C5D NAD 401 B 1 HETATM 29 C C4D NAD . . . E 2 15.001 34.43 82.023 1 27.22 ? C4D NAD 401 B 1 HETATM 30 O O4D NAD . . . E 2 14.498 33.212 81.423 1 27.36 ? O4D NAD 401 B 1 HETATM 31 C C3D NAD . . . E 2 15.763 35.173 80.915 1 25.51 ? C3D NAD 401 B 1 HETATM 32 O O3D NAD . . . E 2 17.16 34.977 81.062 1 21.41 ? O3D NAD 401 B 1 HETATM 33 C C2D NAD . . . E 2 15.249 34.505 79.64 1 27.12 ? C2D NAD 401 B 1 HETATM 34 O O2D NAD . . . E 2 16.137 34.645 78.546 1 26.07 ? O2D NAD 401 B 1 HETATM 35 C C1D NAD . . . E 2 15.058 33.081 80.142 1 27.08 ? C1D NAD 401 B 1 HETATM 36 N N1N NAD . . . E 2 14.131 32.18 79.287 1 25.95 ? N1N NAD 401 B 1 HETATM 37 C C2N NAD . . . E 2 12.893 32.626 78.998 1 28.62 ? C2N NAD 401 B 1 HETATM 38 C C3N NAD . . . E 2 12.05 31.868 78.205 1 29.75 ? C3N NAD 401 B 1 HETATM 39 C C7N NAD . . . E 2 10.646 32.319 77.902 1 31.83 ? C7N NAD 401 B 1 HETATM 40 O O7N NAD . . . E 2 10.047 31.833 76.928 1 29.46 ? O7N NAD 401 B 1 HETATM 41 N N7N NAD . . . E 2 10.148 33.329 78.61 1 31.83 ? N7N NAD 401 B 1 HETATM 42 C C4N NAD . . . E 2 12.497 30.627 77.753 1 28.27 ? C4N NAD 401 B 1 HETATM 43 C C5N NAD . . . E 2 13.761 30.18 78.095 1 27.37 ? C5N NAD 401 B 1 HETATM 44 C C6N NAD . . . E 2 14.577 30.98 78.866 1 23.73 ? C6N NAD 401 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #