data_8G93 # _model_server_result.job_id HK-DmanGx75FTvn3CmEGmQ _model_server_result.datetime_utc '2024-12-21 17:17:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8G93 # _exptl.entry_id 8G93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.408 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-fluoro-N-({(1r,4r)-4-[(2-fluorophenoxy)methyl]-1-hydroxycyclohexyl}methyl)-4-hydroxybenzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G93 _cell.length_a 76.73 _cell.length_b 186.32 _cell.length_c 65.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H23 F2 N O4' _chem_comp.formula_weight 391.408 _chem_comp.id YXW _chem_comp.mon_nstd_flag . _chem_comp.name 3-fluoro-N-({(1r,4r)-4-[(2-fluorophenoxy)methyl]-1-hydroxycyclohexyl}methyl)-4-hydroxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C25 YXW sing 451 n n F29 C24 YXW sing 452 n n C25 C24 YXW doub 453 n y C25 C26 YXW sing 454 n y C24 C23 YXW sing 455 n y C26 C27 YXW doub 456 n y C23 C22 YXW doub 457 n y C27 C22 YXW sing 458 n y C22 C20 YXW sing 459 n n O21 C20 YXW doub 460 n n C20 N19 YXW sing 461 n n N19 C18 YXW sing 462 n n C18 C14 YXW sing 463 n n O17 C14 YXW sing 464 n n C14 C15 YXW sing 465 n n C14 C13 YXW sing 466 n n C15 C16 YXW sing 467 n n C13 C12 YXW sing 468 n n C16 C10 YXW sing 469 n n C12 C10 YXW sing 470 n n C10 C9 YXW sing 471 n n C9 O8 YXW sing 472 n n O8 C3 YXW sing 473 n n C2 C3 YXW doub 474 n y C2 C1 YXW sing 475 n y C3 C4 YXW sing 476 n y C1 C6 YXW doub 477 n y C4 F7 YXW sing 478 n n C4 C5 YXW doub 479 n y C6 C5 YXW sing 480 n y C6 H33 YXW sing 481 n n C9 H35 YXW sing 482 n n C9 H34 YXW sing 483 n n C13 H39 YXW sing 484 n n C13 H38 YXW sing 485 n n C18 H45 YXW sing 486 n n C18 H46 YXW sing 487 n n C16 H43 YXW sing 488 n n C16 H42 YXW sing 489 n n O17 H44 YXW sing 490 n n C26 H49 YXW sing 491 n n C1 H30 YXW sing 492 n n C2 H31 YXW sing 493 n n C5 H32 YXW sing 494 n n C10 H11 YXW sing 495 n n C12 H36 YXW sing 496 n n C12 H37 YXW sing 497 n n C15 H41 YXW sing 498 n n C15 H40 YXW sing 499 n n N19 H47 YXW sing 500 n n C23 H48 YXW sing 501 n n C27 H50 YXW sing 502 n n O28 H51 YXW sing 503 n n # _atom_sites.entry_id 8G93 _atom_sites.fract_transf_matrix[1][1] 0.013033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 296 NAD NAD . D 3 YXW A 1 402 301 YXW PFE . E 2 NAD B 1 401 296 NAD NAD . F 3 YXW B 1 402 301 YXW PFE . G 4 HOH A 1 501 73 HOH HOH . G 4 HOH A 2 502 30 HOH HOH . G 4 HOH A 3 503 32 HOH HOH . G 4 HOH A 4 504 9 HOH HOH . G 4 HOH A 5 505 2 HOH HOH . G 4 HOH A 6 506 14 HOH HOH . G 4 HOH A 7 507 67 HOH HOH . G 4 HOH A 8 508 29 HOH HOH . G 4 HOH A 9 509 54 HOH HOH . G 4 HOH A 10 510 10 HOH HOH . G 4 HOH A 11 511 19 HOH HOH . G 4 HOH A 12 512 31 HOH HOH . G 4 HOH A 13 513 26 HOH HOH . G 4 HOH A 14 514 4 HOH HOH . G 4 HOH A 15 515 12 HOH HOH . G 4 HOH A 16 516 36 HOH HOH . G 4 HOH A 17 517 16 HOH HOH . G 4 HOH A 18 518 22 HOH HOH . G 4 HOH A 19 519 71 HOH HOH . G 4 HOH A 20 520 11 HOH HOH . G 4 HOH A 21 521 5 HOH HOH . G 4 HOH A 22 522 70 HOH HOH . G 4 HOH A 23 523 49 HOH HOH . G 4 HOH A 24 524 57 HOH HOH . G 4 HOH A 25 525 3 HOH HOH . G 4 HOH A 26 526 46 HOH HOH . G 4 HOH A 27 527 6 HOH HOH . G 4 HOH A 28 528 56 HOH HOH . G 4 HOH A 29 529 63 HOH HOH . G 4 HOH A 30 530 65 HOH HOH . G 4 HOH A 31 531 39 HOH HOH . G 4 HOH A 32 532 68 HOH HOH . G 4 HOH A 33 533 13 HOH HOH . G 4 HOH A 34 534 47 HOH HOH . G 4 HOH A 35 535 58 HOH HOH . G 4 HOH A 36 536 69 HOH HOH . G 4 HOH A 37 537 35 HOH HOH . G 4 HOH A 38 538 27 HOH HOH . G 4 HOH A 39 539 55 HOH HOH . G 4 HOH A 40 540 42 HOH HOH . G 4 HOH A 41 541 17 HOH HOH . G 4 HOH A 42 542 48 HOH HOH . G 4 HOH A 43 543 53 HOH HOH . G 4 HOH A 44 544 24 HOH HOH . G 4 HOH A 45 545 23 HOH HOH . G 4 HOH A 46 546 38 HOH HOH . G 4 HOH A 47 547 18 HOH HOH . G 4 HOH A 48 548 25 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 15 HOH HOH . H 4 HOH B 3 503 45 HOH HOH . H 4 HOH B 4 504 28 HOH HOH . H 4 HOH B 5 505 34 HOH HOH . H 4 HOH B 6 506 33 HOH HOH . H 4 HOH B 7 507 7 HOH HOH . H 4 HOH B 8 508 62 HOH HOH . H 4 HOH B 9 509 59 HOH HOH . H 4 HOH B 10 510 52 HOH HOH . H 4 HOH B 11 511 8 HOH HOH . H 4 HOH B 12 512 64 HOH HOH . H 4 HOH B 13 513 37 HOH HOH . H 4 HOH B 14 514 72 HOH HOH . H 4 HOH B 15 515 51 HOH HOH . H 4 HOH B 16 516 43 HOH HOH . H 4 HOH B 17 517 66 HOH HOH . H 4 HOH B 18 518 41 HOH HOH . H 4 HOH B 19 519 44 HOH HOH . H 4 HOH B 20 520 21 HOH HOH . H 4 HOH B 21 521 50 HOH HOH . H 4 HOH B 22 522 20 HOH HOH . H 4 HOH B 23 523 61 HOH HOH . H 4 HOH B 24 524 60 HOH HOH . H 4 HOH B 25 525 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 YXW . . . D 3 44.552 22.468 82.414 1 54.82 ? C4 YXW 402 A 1 HETATM 2 C C6 YXW . . . D 3 42.813 20.86 82.831 1 60.66 ? C6 YXW 402 A 1 HETATM 3 C C9 YXW . . . D 3 43.932 24.357 79.366 1 51.31 ? C9 YXW 402 A 1 HETATM 4 C C13 YXW . . . D 3 46.996 25.924 77.52 1 52.84 ? C13 YXW 402 A 1 HETATM 5 C C20 YXW . . . D 3 44.101 25.217 73.682 1 42.36 ? C20 YXW 402 A 1 HETATM 6 C C18 YXW . . . D 3 46.052 25.46 75.213 1 50.67 ? C18 YXW 402 A 1 HETATM 7 C C16 YXW . . . D 3 44.047 26.11 77.576 1 47.95 ? C16 YXW 402 A 1 HETATM 8 O O17 YXW . . . D 3 47.025 27.567 75.76 1 49.24 ? O17 YXW 402 A 1 HETATM 9 C C26 YXW . . . D 3 42.287 27.878 71.652 1 40.85 ? C26 YXW 402 A 1 HETATM 10 C C1 YXW . . . D 3 42.198 21.229 81.636 1 57.31 ? C1 YXW 402 A 1 HETATM 11 C C2 YXW . . . D 3 42.756 22.229 80.833 1 53.96 ? C2 YXW 402 A 1 HETATM 12 C C3 YXW . . . D 3 43.941 22.861 81.22 1 53.04 ? C3 YXW 402 A 1 HETATM 13 C C5 YXW . . . D 3 43.994 21.481 83.223 1 60.83 ? C5 YXW 402 A 1 HETATM 14 F F7 YXW . . . D 3 45.701 23.047 82.797 1 50.87 ? F7 YXW 402 A 1 HETATM 15 O O8 YXW . . . D 3 44.585 23.852 80.529 1 50.78 ? O8 YXW 402 A 1 HETATM 16 C C10 YXW . . . D 3 44.8 25.462 78.743 1 50.94 ? C10 YXW 402 A 1 HETATM 17 C C12 YXW . . . D 3 46.172 24.91 78.312 1 53.88 ? C12 YXW 402 A 1 HETATM 18 C C14 YXW . . . D 3 46.229 26.517 76.324 1 50.57 ? C14 YXW 402 A 1 HETATM 19 C C15 YXW . . . D 3 44.909 27.122 76.833 1 47.27 ? C15 YXW 402 A 1 HETATM 20 N N19 YXW . . . D 3 45.198 25.932 74.133 1 46.33 ? N19 YXW 402 A 1 HETATM 21 O O21 YXW . . . D 3 43.803 24.084 74.052 1 40.63 ? O21 YXW 402 A 1 HETATM 22 C C22 YXW . . . D 3 43.225 25.9 72.699 1 43.66 ? C22 YXW 402 A 1 HETATM 23 C C23 YXW . . . D 3 42.331 25.124 71.968 1 46.61 ? C23 YXW 402 A 1 HETATM 24 C C24 YXW . . . D 3 41.421 25.74 71.106 1 39.22 ? C24 YXW 402 A 1 HETATM 25 C C25 YXW . . . D 3 41.343 27.135 70.909 1 39.12 ? C25 YXW 402 A 1 HETATM 26 C C27 YXW . . . D 3 43.201 27.286 72.537 1 43.73 ? C27 YXW 402 A 1 HETATM 27 O O28 YXW . . . D 3 40.482 27.683 70.143 1 37.02 ? O28 YXW 402 A 1 HETATM 28 F F29 YXW . . . D 3 40.557 24.938 70.463 1 34.59 ? F29 YXW 402 A 1 HETATM 29 H H33 YXW . . . D 3 42.372 20.086 83.453 0 60.73 ? H33 YXW 402 A 1 HETATM 30 H H35 YXW . . . D 3 43.79 23.552 78.634 0 52.18 ? H35 YXW 402 A 1 HETATM 31 H H34 YXW . . . D 3 42.957 24.773 79.644 0 50.49 ? H34 YXW 402 A 1 HETATM 32 H H39 YXW . . . D 3 47.307 26.736 78.193 0 52.22 ? H39 YXW 402 A 1 HETATM 33 H H38 YXW . . . D 3 47.929 25.461 77.178 0 53.52 ? H38 YXW 402 A 1 HETATM 34 H H45 YXW . . . D 3 47.02 25.234 74.752 0 50.88 ? H45 YXW 402 A 1 HETATM 35 H H46 YXW . . . D 3 45.642 24.526 75.604 0 50.53 ? H46 YXW 402 A 1 HETATM 36 H H43 YXW . . . D 3 43.699 25.34 76.878 0 48.48 ? H43 YXW 402 A 1 HETATM 37 H H42 YXW . . . D 3 43.15 26.613 77.955 0 47.44 ? H42 YXW 402 A 1 HETATM 38 H H44 YXW . . . D 3 47.164 28.243 76.445 0 49.26 ? H44 YXW 402 A 1 HETATM 39 H H49 YXW . . . D 3 42.303 28.966 71.569 0 40.88 ? H49 YXW 402 A 1 HETATM 40 H H30 YXW . . . D 3 41.277 20.741 81.329 0 57.33 ? H30 YXW 402 A 1 HETATM 41 H H31 YXW . . . D 3 42.239 22.488 79.914 0 53.95 ? H31 YXW 402 A 1 HETATM 42 H H32 YXW . . . D 3 44.482 21.194 84.149 0 60.93 ? H32 YXW 402 A 1 HETATM 43 H H11 YXW . . . D 3 44.985 26.228 79.509 0 50.93 ? H11 YXW 402 A 1 HETATM 44 H H36 YXW . . . D 3 46.745 24.611 79.199 0 54.53 ? H36 YXW 402 A 1 HETATM 45 H H37 YXW . . . D 3 46.038 23.999 77.718 0 53.29 ? H37 YXW 402 A 1 HETATM 46 H H41 YXW . . . D 3 44.341 27.566 76.006 0 46.39 ? H41 YXW 402 A 1 HETATM 47 H H40 YXW . . . D 3 45.13 27.965 77.502 0 48.11 ? H40 YXW 402 A 1 HETATM 48 H H47 YXW . . . D 3 45.456 26.812 73.7 0 46.36 ? H47 YXW 402 A 1 HETATM 49 H H48 YXW . . . D 3 42.304 24.042 72.063 0 46.73 ? H48 YXW 402 A 1 HETATM 50 H H50 YXW . . . D 3 43.854 27.944 73.103 0 43.76 ? H50 YXW 402 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #