data_8G96 # _model_server_result.job_id oh7kFpe5G-d1Rif8hkuVig _model_server_result.datetime_utc '2024-10-19 10:34:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8G96 # _exptl.entry_id 8G96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.161 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ornithine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G96 _cell.length_a 63.975 _cell.length_b 92.785 _cell.length_c 152.644 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C5 H12 N2 O2' _chem_comp.formula_weight 132.161 _chem_comp.id ORN _chem_comp.mon_nstd_flag n _chem_comp.name L-ornithine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ORN sing 250 n n N H ORN sing 251 n n N H2 ORN sing 252 n n CA CB ORN sing 253 n n CA C ORN sing 254 n n CA HA ORN sing 255 n n CB CG ORN sing 256 n n CB HB2 ORN sing 257 n n CB HB3 ORN sing 258 n n CG CD ORN sing 259 n n CG HG2 ORN sing 260 n n CG HG3 ORN sing 261 n n CD NE ORN sing 262 n n CD HD2 ORN sing 263 n n CD HD3 ORN sing 264 n n NE HE1 ORN sing 265 n n NE HE2 ORN sing 266 n n C O ORN doub 267 n n C OXT ORN sing 268 n n OXT HXT ORN sing 269 n n # _atom_sites.entry_id 8G96 _atom_sites.fract_transf_matrix[1][1] 0.015631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ORN A 1 501 1 ORN ORN . D 2 ORN B 1 501 2 ORN ORN . E 3 GOL B 1 502 1 GOL GOL . F 3 GOL B 1 503 2 GOL GOL . G 4 HOH A 1 601 223 HOH HOH . G 4 HOH A 2 602 97 HOH HOH . G 4 HOH A 3 603 38 HOH HOH . G 4 HOH A 4 604 14 HOH HOH . G 4 HOH A 5 605 61 HOH HOH . G 4 HOH A 6 606 8 HOH HOH . G 4 HOH A 7 607 90 HOH HOH . G 4 HOH A 8 608 19 HOH HOH . G 4 HOH A 9 609 171 HOH HOH . G 4 HOH A 10 610 48 HOH HOH . G 4 HOH A 11 611 31 HOH HOH . G 4 HOH A 12 612 7 HOH HOH . G 4 HOH A 13 613 54 HOH HOH . G 4 HOH A 14 614 75 HOH HOH . G 4 HOH A 15 615 3 HOH HOH . G 4 HOH A 16 616 71 HOH HOH . G 4 HOH A 17 617 27 HOH HOH . G 4 HOH A 18 618 36 HOH HOH . G 4 HOH A 19 619 29 HOH HOH . G 4 HOH A 20 620 22 HOH HOH . G 4 HOH A 21 621 45 HOH HOH . G 4 HOH A 22 622 9 HOH HOH . G 4 HOH A 23 623 95 HOH HOH . G 4 HOH A 24 624 17 HOH HOH . G 4 HOH A 25 625 93 HOH HOH . G 4 HOH A 26 626 32 HOH HOH . G 4 HOH A 27 627 160 HOH HOH . G 4 HOH A 28 628 215 HOH HOH . G 4 HOH A 29 629 70 HOH HOH . G 4 HOH A 30 630 46 HOH HOH . G 4 HOH A 31 631 83 HOH HOH . G 4 HOH A 32 632 56 HOH HOH . G 4 HOH A 33 633 188 HOH HOH . G 4 HOH A 34 634 18 HOH HOH . G 4 HOH A 35 635 5 HOH HOH . G 4 HOH A 36 636 150 HOH HOH . G 4 HOH A 37 637 163 HOH HOH . G 4 HOH A 38 638 126 HOH HOH . G 4 HOH A 39 639 175 HOH HOH . G 4 HOH A 40 640 28 HOH HOH . G 4 HOH A 41 641 11 HOH HOH . G 4 HOH A 42 642 224 HOH HOH . G 4 HOH A 43 643 1 HOH HOH . G 4 HOH A 44 644 77 HOH HOH . G 4 HOH A 45 645 52 HOH HOH . G 4 HOH A 46 646 63 HOH HOH . G 4 HOH A 47 647 148 HOH HOH . G 4 HOH A 48 648 66 HOH HOH . G 4 HOH A 49 649 185 HOH HOH . G 4 HOH A 50 650 76 HOH HOH . G 4 HOH A 51 651 247 HOH HOH . G 4 HOH A 52 652 103 HOH HOH . G 4 HOH A 53 653 208 HOH HOH . G 4 HOH A 54 654 105 HOH HOH . G 4 HOH A 55 655 102 HOH HOH . G 4 HOH A 56 656 51 HOH HOH . G 4 HOH A 57 657 59 HOH HOH . G 4 HOH A 58 658 157 HOH HOH . G 4 HOH A 59 659 117 HOH HOH . G 4 HOH A 60 660 244 HOH HOH . G 4 HOH A 61 661 88 HOH HOH . G 4 HOH A 62 662 129 HOH HOH . G 4 HOH A 63 663 242 HOH HOH . G 4 HOH A 64 664 211 HOH HOH . G 4 HOH A 65 665 243 HOH HOH . G 4 HOH A 66 666 239 HOH HOH . G 4 HOH A 67 667 240 HOH HOH . G 4 HOH A 68 668 98 HOH HOH . G 4 HOH A 69 669 245 HOH HOH . G 4 HOH A 70 670 178 HOH HOH . G 4 HOH A 71 671 25 HOH HOH . G 4 HOH A 72 672 85 HOH HOH . G 4 HOH A 73 673 128 HOH HOH . G 4 HOH A 74 674 60 HOH HOH . G 4 HOH A 75 675 121 HOH HOH . H 4 HOH B 1 601 147 HOH HOH . H 4 HOH B 2 602 12 HOH HOH . H 4 HOH B 3 603 2 HOH HOH . H 4 HOH B 4 604 184 HOH HOH . H 4 HOH B 5 605 100 HOH HOH . H 4 HOH B 6 606 130 HOH HOH . H 4 HOH B 7 607 80 HOH HOH . H 4 HOH B 8 608 135 HOH HOH . H 4 HOH B 9 609 4 HOH HOH . H 4 HOH B 10 610 43 HOH HOH . H 4 HOH B 11 611 42 HOH HOH . H 4 HOH B 12 612 81 HOH HOH . H 4 HOH B 13 613 136 HOH HOH . H 4 HOH B 14 614 62 HOH HOH . H 4 HOH B 15 615 248 HOH HOH . H 4 HOH B 16 616 82 HOH HOH . H 4 HOH B 17 617 26 HOH HOH . H 4 HOH B 18 618 33 HOH HOH . H 4 HOH B 19 619 113 HOH HOH . H 4 HOH B 20 620 69 HOH HOH . H 4 HOH B 21 621 134 HOH HOH . H 4 HOH B 22 622 118 HOH HOH . H 4 HOH B 23 623 6 HOH HOH . H 4 HOH B 24 624 40 HOH HOH . H 4 HOH B 25 625 115 HOH HOH . H 4 HOH B 26 626 91 HOH HOH . H 4 HOH B 27 627 15 HOH HOH . H 4 HOH B 28 628 124 HOH HOH . H 4 HOH B 29 629 13 HOH HOH . H 4 HOH B 30 630 20 HOH HOH . H 4 HOH B 31 631 55 HOH HOH . H 4 HOH B 32 632 21 HOH HOH . H 4 HOH B 33 633 30 HOH HOH . H 4 HOH B 34 634 183 HOH HOH . H 4 HOH B 35 635 192 HOH HOH . H 4 HOH B 36 636 120 HOH HOH . H 4 HOH B 37 637 16 HOH HOH . H 4 HOH B 38 638 249 HOH HOH . H 4 HOH B 39 639 10 HOH HOH . H 4 HOH B 40 640 250 HOH HOH . H 4 HOH B 41 641 251 HOH HOH . H 4 HOH B 42 642 170 HOH HOH . H 4 HOH B 43 643 241 HOH HOH . H 4 HOH B 44 644 190 HOH HOH . H 4 HOH B 45 645 246 HOH HOH . H 4 HOH B 46 646 252 HOH HOH . H 4 HOH B 47 647 123 HOH HOH . H 4 HOH B 48 648 140 HOH HOH . H 4 HOH B 49 649 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ORN . . . C 2 14.344 -1.988 11.216 1 75.78 ? N ORN 501 A 1 HETATM 2 C CA ORN . . . C 2 13.978 -1.16 12.368 1 77.69 ? CA ORN 501 A 1 HETATM 3 C CB ORN . . . C 2 12.521 -0.689 12.272 1 76.98 ? CB ORN 501 A 1 HETATM 4 C CG ORN . . . C 2 12.303 0.059 10.972 1 77.02 ? CG ORN 501 A 1 HETATM 5 C CD ORN . . . C 2 12.995 1.428 10.985 1 75.14 ? CD ORN 501 A 1 HETATM 6 N NE ORN . . . C 2 13.063 2.133 9.727 1 73.02 ? NE ORN 501 A 1 HETATM 7 C C ORN . . . C 2 14.25 -1.926 13.703 1 78.68 ? C ORN 501 A 1 HETATM 8 O O ORN . . . C 2 14.626 -3.133 13.609 1 78.66 ? O ORN 501 A 1 HETATM 9 O OXT ORN . . . C 2 14.122 -1.28 14.781 1 80.79 ? OXT ORN 501 A 1 HETATM 10 H H2 ORN . . . C 2 14.724 -2.734 11.516 1 90.78 ? H2 ORN 501 A 1 HETATM 11 H H ORN . . . C 2 14.95 -1.575 10.77 1 90.78 ? H ORN 501 A 1 HETATM 12 H HA ORN . . . C 2 14.514 -0.353 12.414 1 97.76 ? HA ORN 501 A 1 HETATM 13 H HB2 ORN . . . C 2 12.309 -0.111 13.021 1 93.06 ? HB2 ORN 501 A 1 HETATM 14 H HB3 ORN . . . C 2 11.923 -1.451 12.314 1 93.06 ? HB3 ORN 501 A 1 HETATM 15 H HG2 ORN . . . C 2 11.351 0.176 10.826 1 95.45 ? HG2 ORN 501 A 1 HETATM 16 H HG3 ORN . . . C 2 12.643 -0.472 10.235 1 95.45 ? HG3 ORN 501 A 1 HETATM 17 H HD2 ORN . . . C 2 13.903 1.314 11.305 1 91.39 ? HD2 ORN 501 A 1 HETATM 18 H HD3 ORN . . . C 2 12.535 2.003 11.617 1 91.39 ? HD3 ORN 501 A 1 HETATM 19 H HE1 ORN . . . C 2 12.245 2.257 9.403 1 85.46 ? HE1 ORN 501 A 1 HETATM 20 H HE2 ORN . . . C 2 13.436 2.935 9.836 1 85.46 ? HE2 ORN 501 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #