data_8G97 # _model_server_result.job_id TkrzpVAIbYRDjIilh3P2dQ _model_server_result.datetime_utc '2025-01-12 11:40:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 8G97 # _exptl.entry_id 8G97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G97 _cell.length_a 63.837 _cell.length_b 93.928 _cell.length_c 152.257 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,M 1 1 B,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8G97 _atom_sites.fract_transf_matrix[1][1] 0.015665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 3 GOL GOL . D 2 GOL A 1 502 5 GOL GOL . E 2 GOL A 1 503 6 GOL GOL . F 2 GOL A 1 504 7 GOL GOL . G 2 GOL A 1 505 10 GOL GOL . H 3 MG A 1 506 2 MG MG . I 4 ORD A 1 507 2 ORD DOR . J 2 GOL B 1 501 1 GOL GOL . K 2 GOL B 1 502 9 GOL GOL . L 4 ORD B 1 503 1 ORD DOR . M 5 HOH A 1 601 23 HOH HOH . M 5 HOH A 2 602 19 HOH HOH . M 5 HOH A 3 603 97 HOH HOH . M 5 HOH A 4 604 71 HOH HOH . M 5 HOH A 5 605 4 HOH HOH . M 5 HOH A 6 606 249 HOH HOH . M 5 HOH A 7 607 13 HOH HOH . M 5 HOH A 8 608 116 HOH HOH . M 5 HOH A 9 609 45 HOH HOH . M 5 HOH A 10 610 2 HOH HOH . M 5 HOH A 11 611 14 HOH HOH . M 5 HOH A 12 612 41 HOH HOH . M 5 HOH A 13 613 93 HOH HOH . M 5 HOH A 14 614 9 HOH HOH . M 5 HOH A 15 615 193 HOH HOH . M 5 HOH A 16 616 188 HOH HOH . M 5 HOH A 17 617 118 HOH HOH . M 5 HOH A 18 618 8 HOH HOH . M 5 HOH A 19 619 6 HOH HOH . M 5 HOH A 20 620 26 HOH HOH . M 5 HOH A 21 621 128 HOH HOH . M 5 HOH A 22 622 138 HOH HOH . M 5 HOH A 23 623 31 HOH HOH . M 5 HOH A 24 624 3 HOH HOH . M 5 HOH A 25 625 17 HOH HOH . M 5 HOH A 26 626 61 HOH HOH . M 5 HOH A 27 627 178 HOH HOH . M 5 HOH A 28 628 50 HOH HOH . M 5 HOH A 29 629 110 HOH HOH . M 5 HOH A 30 630 20 HOH HOH . M 5 HOH A 31 631 134 HOH HOH . M 5 HOH A 32 632 60 HOH HOH . M 5 HOH A 33 633 46 HOH HOH . M 5 HOH A 34 634 108 HOH HOH . M 5 HOH A 35 635 133 HOH HOH . M 5 HOH A 36 636 33 HOH HOH . M 5 HOH A 37 637 74 HOH HOH . M 5 HOH A 38 638 187 HOH HOH . M 5 HOH A 39 639 29 HOH HOH . M 5 HOH A 40 640 202 HOH HOH . M 5 HOH A 41 641 132 HOH HOH . M 5 HOH A 42 642 73 HOH HOH . M 5 HOH A 43 643 63 HOH HOH . M 5 HOH A 44 644 201 HOH HOH . M 5 HOH A 45 645 83 HOH HOH . M 5 HOH A 46 646 251 HOH HOH . M 5 HOH A 47 647 172 HOH HOH . M 5 HOH A 48 648 200 HOH HOH . M 5 HOH A 49 649 91 HOH HOH . M 5 HOH A 50 650 170 HOH HOH . M 5 HOH A 51 651 67 HOH HOH . M 5 HOH A 52 652 173 HOH HOH . M 5 HOH A 53 653 207 HOH HOH . M 5 HOH A 54 654 195 HOH HOH . M 5 HOH A 55 655 49 HOH HOH . M 5 HOH A 56 656 212 HOH HOH . M 5 HOH A 57 657 250 HOH HOH . M 5 HOH A 58 658 205 HOH HOH . M 5 HOH A 59 659 165 HOH HOH . M 5 HOH A 60 660 247 HOH HOH . M 5 HOH A 61 661 152 HOH HOH . M 5 HOH A 62 662 164 HOH HOH . M 5 HOH A 63 663 252 HOH HOH . M 5 HOH A 64 664 136 HOH HOH . M 5 HOH A 65 665 174 HOH HOH . M 5 HOH A 66 666 175 HOH HOH . M 5 HOH A 67 667 179 HOH HOH . M 5 HOH A 68 668 153 HOH HOH . M 5 HOH A 69 669 181 HOH HOH . M 5 HOH A 70 670 204 HOH HOH . M 5 HOH A 71 671 190 HOH HOH . M 5 HOH A 72 672 186 HOH HOH . M 5 HOH A 73 673 140 HOH HOH . M 5 HOH A 74 674 184 HOH HOH . M 5 HOH A 75 675 180 HOH HOH . N 5 HOH B 1 601 166 HOH HOH . N 5 HOH B 2 602 99 HOH HOH . N 5 HOH B 3 603 75 HOH HOH . N 5 HOH B 4 604 1 HOH HOH . N 5 HOH B 5 605 122 HOH HOH . N 5 HOH B 6 606 5 HOH HOH . N 5 HOH B 7 607 16 HOH HOH . N 5 HOH B 8 608 36 HOH HOH . N 5 HOH B 9 609 11 HOH HOH . N 5 HOH B 10 610 142 HOH HOH . N 5 HOH B 11 611 112 HOH HOH . N 5 HOH B 12 612 21 HOH HOH . N 5 HOH B 13 613 25 HOH HOH . N 5 HOH B 14 614 37 HOH HOH . N 5 HOH B 15 615 226 HOH HOH . N 5 HOH B 16 616 66 HOH HOH . N 5 HOH B 17 617 22 HOH HOH . N 5 HOH B 18 618 101 HOH HOH . N 5 HOH B 19 619 15 HOH HOH . N 5 HOH B 20 620 126 HOH HOH . N 5 HOH B 21 621 44 HOH HOH . N 5 HOH B 22 622 76 HOH HOH . N 5 HOH B 23 623 114 HOH HOH . N 5 HOH B 24 624 56 HOH HOH . N 5 HOH B 25 625 192 HOH HOH . N 5 HOH B 26 626 47 HOH HOH . N 5 HOH B 27 627 65 HOH HOH . N 5 HOH B 28 628 95 HOH HOH . N 5 HOH B 29 629 124 HOH HOH . N 5 HOH B 30 630 34 HOH HOH . N 5 HOH B 31 631 105 HOH HOH . N 5 HOH B 32 632 42 HOH HOH . N 5 HOH B 33 633 54 HOH HOH . N 5 HOH B 34 634 32 HOH HOH . N 5 HOH B 35 635 106 HOH HOH . N 5 HOH B 36 636 240 HOH HOH . N 5 HOH B 37 637 169 HOH HOH . N 5 HOH B 38 638 224 HOH HOH . N 5 HOH B 39 639 243 HOH HOH . N 5 HOH B 40 640 230 HOH HOH . N 5 HOH B 41 641 220 HOH HOH . N 5 HOH B 42 642 232 HOH HOH . N 5 HOH B 43 643 194 HOH HOH . N 5 HOH B 44 644 222 HOH HOH . N 5 HOH B 45 645 90 HOH HOH . N 5 HOH B 46 646 241 HOH HOH . N 5 HOH B 47 647 158 HOH HOH . N 5 HOH B 48 648 227 HOH HOH . N 5 HOH B 49 649 167 HOH HOH . N 5 HOH B 50 650 234 HOH HOH . N 5 HOH B 51 651 209 HOH HOH . N 5 HOH B 52 652 244 HOH HOH . N 5 HOH B 53 653 221 HOH HOH . N 5 HOH B 54 654 233 HOH HOH . N 5 HOH B 55 655 149 HOH HOH . N 5 HOH B 56 656 87 HOH HOH . N 5 HOH B 57 657 139 HOH HOH . N 5 HOH B 58 658 218 HOH HOH . N 5 HOH B 59 659 223 HOH HOH . N 5 HOH B 60 660 120 HOH HOH . N 5 HOH B 61 661 113 HOH HOH . N 5 HOH B 62 662 239 HOH HOH . N 5 HOH B 63 663 197 HOH HOH . N 5 HOH B 64 664 191 HOH HOH . N 5 HOH B 65 665 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 5.959 0.965 -18.57 1 66.11 ? C1 GOL 501 B 1 HETATM 2 O O1 GOL . . . J 2 5.236 -0.23 -18.539 1 61.14 ? O1 GOL 501 B 1 HETATM 3 C C2 GOL . . . J 2 6.107 1.415 -17.132 1 71.19 ? C2 GOL 501 B 1 HETATM 4 O O2 GOL . . . J 2 7.308 2.087 -16.928 1 69.71 ? O2 GOL 501 B 1 HETATM 5 C C3 GOL . . . J 2 4.907 2.334 -16.857 1 73.61 ? C3 GOL 501 B 1 HETATM 6 O O3 GOL . . . J 2 3.817 1.842 -17.574 1 69.61 ? O3 GOL 501 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #