data_8G98
#
_model_server_result.job_id            TSne-EYs6QpbOeJEHUq6lg 
_model_server_result.datetime_utc      '2025-01-12 13:54:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g98 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":505}' 
#
_entry.id    8G98 
#
_exptl.entry_id    8G98 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.195 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            LYSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8G98 
_cell.length_a            63.48 
_cell.length_b            91.978 
_cell.length_c            152.246 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G98 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,P 1 1 
B,H,I,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H15 N2 O2 1' 
_chem_comp.formula_weight    147.195 
_chem_comp.id                LYS 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              LYSINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA LYS sing 207 n n 
N H LYS sing 208 n n 
N H2 LYS sing 209 n n 
CA C LYS sing 210 n n 
CA CB LYS sing 211 n n 
CA HA LYS sing 212 n n 
C O LYS doub 213 n n 
C OXT LYS sing 214 n n 
CB CG LYS sing 215 n n 
CB HB2 LYS sing 216 n n 
CB HB3 LYS sing 217 n n 
CG CD LYS sing 218 n n 
CG HG2 LYS sing 219 n n 
CG HG3 LYS sing 220 n n 
CD CE LYS sing 221 n n 
CD HD2 LYS sing 222 n n 
CD HD3 LYS sing 223 n n 
CE NZ LYS sing 224 n n 
CE HE2 LYS sing 225 n n 
CE HE3 LYS sing 226 n n 
NZ HZ1 LYS sing 227 n n 
NZ HZ2 LYS sing 228 n n 
NZ HZ3 LYS sing 229 n n 
OXT HXT LYS sing 230 n n 
#
_atom_sites.entry_id                     8G98 
_atom_sites.fract_transf_matrix[1][1]    0.015753 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 501 8 GOL GOL . 
D 2 GOL A 1 502 12 GOL GOL . 
E 2 GOL A 1 503 14 GOL GOL . 
F 2 GOL A 1 504 16 GOL GOL . 
G 3 LYS A 1 505 501 LYS LYS . 
H 2 GOL B 1 501 1 GOL GOL . 
I 2 GOL B 1 502 2 GOL GOL . 
J 2 GOL B 1 503 5 GOL GOL . 
K 2 GOL B 1 504 6 GOL GOL . 
L 2 GOL B 1 505 7 GOL GOL . 
M 2 GOL B 1 506 9 GOL GOL . 
N 2 GOL B 1 507 15 GOL GOL . 
O 2 GOL B 1 508 17 GOL GOL . 
P 4 HOH A 1 601 42 HOH HOH . 
P 4 HOH A 2 602 3 HOH HOH . 
P 4 HOH A 3 603 23 HOH HOH . 
P 4 HOH A 4 604 82 HOH HOH . 
P 4 HOH A 5 605 28 HOH HOH . 
P 4 HOH A 6 606 6 HOH HOH . 
P 4 HOH A 7 607 59 HOH HOH . 
P 4 HOH A 8 608 100 HOH HOH . 
P 4 HOH A 9 609 8 HOH HOH . 
P 4 HOH A 10 610 26 HOH HOH . 
P 4 HOH A 11 611 166 HOH HOH . 
P 4 HOH A 12 612 54 HOH HOH . 
P 4 HOH A 13 613 46 HOH HOH . 
P 4 HOH A 14 614 52 HOH HOH . 
P 4 HOH A 15 615 12 HOH HOH . 
P 4 HOH A 16 616 122 HOH HOH . 
P 4 HOH A 17 617 1 HOH HOH . 
P 4 HOH A 18 618 24 HOH HOH . 
P 4 HOH A 19 619 107 HOH HOH . 
P 4 HOH A 20 620 18 HOH HOH . 
P 4 HOH A 21 621 19 HOH HOH . 
P 4 HOH A 22 622 101 HOH HOH . 
P 4 HOH A 23 623 75 HOH HOH . 
P 4 HOH A 24 624 146 HOH HOH . 
P 4 HOH A 25 625 168 HOH HOH . 
P 4 HOH A 26 626 17 HOH HOH . 
P 4 HOH A 27 627 158 HOH HOH . 
P 4 HOH A 28 628 31 HOH HOH . 
P 4 HOH A 29 629 79 HOH HOH . 
P 4 HOH A 30 630 139 HOH HOH . 
P 4 HOH A 31 631 68 HOH HOH . 
P 4 HOH A 32 632 169 HOH HOH . 
P 4 HOH A 33 633 39 HOH HOH . 
P 4 HOH A 34 634 73 HOH HOH . 
P 4 HOH A 35 635 58 HOH HOH . 
P 4 HOH A 36 636 171 HOH HOH . 
P 4 HOH A 37 637 114 HOH HOH . 
P 4 HOH A 38 638 87 HOH HOH . 
P 4 HOH A 39 639 63 HOH HOH . 
P 4 HOH A 40 640 151 HOH HOH . 
P 4 HOH A 41 641 160 HOH HOH . 
P 4 HOH A 42 642 147 HOH HOH . 
P 4 HOH A 43 643 148 HOH HOH . 
P 4 HOH A 44 644 111 HOH HOH . 
P 4 HOH A 45 645 172 HOH HOH . 
P 4 HOH A 46 646 155 HOH HOH . 
P 4 HOH A 47 647 170 HOH HOH . 
P 4 HOH A 48 648 167 HOH HOH . 
P 4 HOH A 49 649 108 HOH HOH . 
P 4 HOH A 50 650 173 HOH HOH . 
Q 4 HOH B 1 601 34 HOH HOH . 
Q 4 HOH B 2 602 7 HOH HOH . 
Q 4 HOH B 3 603 41 HOH HOH . 
Q 4 HOH B 4 604 64 HOH HOH . 
Q 4 HOH B 5 605 33 HOH HOH . 
Q 4 HOH B 6 606 67 HOH HOH . 
Q 4 HOH B 7 607 30 HOH HOH . 
Q 4 HOH B 8 608 36 HOH HOH . 
Q 4 HOH B 9 609 150 HOH HOH . 
Q 4 HOH B 10 610 62 HOH HOH . 
Q 4 HOH B 11 611 149 HOH HOH . 
Q 4 HOH B 12 612 165 HOH HOH . 
Q 4 HOH B 13 613 65 HOH HOH . 
Q 4 HOH B 14 614 115 HOH HOH . 
Q 4 HOH B 15 615 27 HOH HOH . 
Q 4 HOH B 16 616 86 HOH HOH . 
Q 4 HOH B 17 617 164 HOH HOH . 
Q 4 HOH B 18 618 163 HOH HOH . 
Q 4 HOH B 19 619 156 HOH HOH . 
Q 4 HOH B 20 620 45 HOH HOH . 
Q 4 HOH B 21 621 32 HOH HOH . 
Q 4 HOH B 22 622 51 HOH HOH . 
Q 4 HOH B 23 623 50 HOH HOH . 
Q 4 HOH B 24 624 145 HOH HOH . 
Q 4 HOH B 25 625 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N LYS . . . G 3 14.462 -2.5 12.295 1 129.25 ? N LYS 505 A 1 
HETATM 2 C CA LYS . . . G 3 14.615 -2.177 13.706 1 130.32 ? CA LYS 505 A 1 
HETATM 3 C C LYS . . . G 3 14.77 -3.486 14.481 1 131.31 ? C LYS 505 A 1 
HETATM 4 O O LYS . . . G 3 14.439 -4.557 13.965 1 131.2 ? O LYS 505 A 1 
HETATM 5 C CB LYS . . . G 3 13.416 -1.371 14.194 1 130.59 ? CB LYS 505 A 1 
HETATM 6 C CG LYS . . . G 3 12.589 -0.762 13.064 1 129.68 ? CG LYS 505 A 1 
HETATM 7 C CD LYS . . . G 3 13.304 0.369 12.351 1 129.05 ? CD LYS 505 A 1 
HETATM 8 C CE LYS . . . G 3 12.479 0.838 11.156 1 128.26 ? CE LYS 505 A 1 
HETATM 9 N NZ LYS . . . G 3 13.05 2.033 10.468 1 127.88 ? NZ LYS 505 A 1 
HETATM 10 O OXT LYS . . . G 3 15.24 -3.519 15.623 1 132.25 ? OXT LYS 505 A 1 
HETATM 11 H H1 LYS . . . G 3 14.532 -1.822 11.771 1 20 ? H1 LYS 505 A 1 
HETATM 12 H H2 LYS . . . G 3 13.648 -3.004 12.223 1 20 ? H2 LYS 505 A 1 
HETATM 13 H H3 LYS . . . G 3 15.193 -3.048 11.999 1 20 ? H3 LYS 505 A 1 
HETATM 14 H HA LYS . . . G 3 15.396 -1.624 13.863 1 20 ? HA LYS 505 A 1 
HETATM 15 H HB2 LYS . . . G 3 13.734 -0.645 14.752 1 20 ? HB2 LYS 505 A 1 
HETATM 16 H HB3 LYS . . . G 3 12.835 -1.955 14.706 1 20 ? HB3 LYS 505 A 1 
HETATM 17 H HG2 LYS . . . G 3 11.764 -0.409 13.433 1 20 ? HG2 LYS 505 A 1 
HETATM 18 H HG3 LYS . . . G 3 12.392 -1.452 12.411 1 20 ? HG3 LYS 505 A 1 
HETATM 19 H HD2 LYS . . . G 3 13.424 1.116 12.957 1 20 ? HD2 LYS 505 A 1 
HETATM 20 H HD3 LYS . . . G 3 14.166 0.06 12.03 1 20 ? HD3 LYS 505 A 1 
HETATM 21 H HE2 LYS . . . G 3 12.43 0.119 10.508 1 20 ? HE2 LYS 505 A 1 
HETATM 22 H HE3 LYS . . . G 3 11.589 1.07 11.463 1 20 ? HE3 LYS 505 A 1 
HETATM 23 H HZ1 LYS . . . G 3 13.872 1.852 10.177 1 20 ? HZ1 LYS 505 A 1 
HETATM 24 H HZ2 LYS . . . G 3 12.54 2.258 9.776 1 20 ? HZ2 LYS 505 A 1 
HETATM 25 H HZ3 LYS . . . G 3 13.089 2.719 11.034 1 20 ? HZ3 LYS 505 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#