data_8G9B # _model_server_result.job_id DWX7D0WBbpBIU3YeZy1uuw _model_server_result.datetime_utc '2024-10-11 20:32:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":603}' # _entry.id 8G9B # _exptl.entry_id 8G9B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G9B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 P N N ? 3 U N N ? 3 Z N N ? 3 EA N N ? 3 JA N N ? 3 OA N N ? 3 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 336 A CYS 331 1_555 L C2 IMP . A IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 B SG CYS 336 B CYS 331 1_555 Q C2 IMP . B IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 C SG CYS 336 C CYS 331 1_555 V C2 IMP . C IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale4 D SG CYS 336 D CYS 331 1_555 AA C2 IMP . D IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 E SG CYS 336 E CYS 331 1_555 FA C2 IMP . E IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale6 F SG CYS 336 F CYS 331 1_555 KA C2 IMP . F IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale7 G SG CYS 336 G CYS 331 1_555 PA C2 IMP . G IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 H SG CYS 336 H CYS 331 1_555 UA C2 IMP . H IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G9B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 2 GTP A 1 602 602 GTP GTP . K 3 ATP A 1 603 603 ATP ATP . L 4 IMP A 1 604 604 IMP IMP . M 5 NAD A 1 605 605 NAD NAD . N 2 GTP B 1 601 601 GTP GTP . O 2 GTP B 1 602 602 GTP GTP . P 3 ATP B 1 603 603 ATP ATP . Q 4 IMP B 1 604 604 IMP IMP . R 5 NAD B 1 605 605 NAD NAD . S 2 GTP C 1 601 601 GTP GTP . T 2 GTP C 1 602 602 GTP GTP . U 3 ATP C 1 603 603 ATP ATP . V 4 IMP C 1 604 604 IMP IMP . W 5 NAD C 1 605 605 NAD NAD . X 2 GTP D 1 601 601 GTP GTP . Y 2 GTP D 1 602 602 GTP GTP . Z 3 ATP D 1 603 603 ATP ATP . AA 4 IMP D 1 604 604 IMP IMP . BA 5 NAD D 1 605 605 NAD NAD . CA 2 GTP E 1 601 601 GTP GTP . DA 2 GTP E 1 602 602 GTP GTP . EA 3 ATP E 1 603 603 ATP ATP . FA 4 IMP E 1 604 604 IMP IMP . GA 5 NAD E 1 605 605 NAD NAD . HA 2 GTP F 1 601 601 GTP GTP . IA 2 GTP F 1 602 602 GTP GTP . JA 3 ATP F 1 603 603 ATP ATP . KA 4 IMP F 1 604 604 IMP IMP . LA 5 NAD F 1 605 605 NAD NAD . MA 2 GTP G 1 601 601 GTP GTP . NA 2 GTP G 1 602 602 GTP GTP . OA 3 ATP G 1 603 603 ATP ATP . PA 4 IMP G 1 604 604 IMP IMP . QA 5 NAD G 1 605 605 NAD NAD . RA 2 GTP H 1 601 601 GTP GTP . SA 2 GTP H 1 602 602 GTP GTP . TA 3 ATP H 1 603 603 ATP ATP . UA 4 IMP H 1 604 604 IMP IMP . VA 5 NAD H 1 605 605 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . EA 3 207.856 210.377 168.485 1 120.33 ? PG ATP 603 E 1 HETATM 2 O O1G ATP . . . EA 3 207.161 210.373 169.826 1 113.13 ? O1G ATP 603 E 1 HETATM 3 O O2G ATP . . . EA 3 206.957 210.06 167.314 1 114.5 ? O2G ATP 603 E 1 HETATM 4 O O3G ATP . . . EA 3 209.181 209.653 168.468 1 114.27 ? O3G ATP 603 E 1 HETATM 5 P PB ATP . . . EA 3 207.391 213.095 168.942 1 109.23 ? PB ATP 603 E 1 HETATM 6 O O1B ATP . . . EA 3 206.092 213.228 168.182 1 110.61 ? O1B ATP 603 E 1 HETATM 7 O O2B ATP . . . EA 3 207.371 212.864 170.434 1 110.53 ? O2B ATP 603 E 1 HETATM 8 O O3B ATP . . . EA 3 208.256 211.921 168.261 1 111.63 ? O3B ATP 603 E 1 HETATM 9 P PA ATP . . . EA 3 208.678 214.798 167.136 1 108.63 ? PA ATP 603 E 1 HETATM 10 O O1A ATP . . . EA 3 209.308 213.592 166.482 1 111.16 ? O1A ATP 603 E 1 HETATM 11 O O2A ATP . . . EA 3 207.484 215.465 166.496 1 112.06 ? O2A ATP 603 E 1 HETATM 12 O O3A ATP . . . EA 3 208.283 214.403 168.646 1 111.84 ? O3A ATP 603 E 1 HETATM 13 O O5' ATP . . . EA 3 209.822 215.909 167.351 1 106.65 ? O5' ATP 603 E 1 HETATM 14 C C5' ATP . . . EA 3 210.951 215.632 168.177 1 108.18 ? C5' ATP 603 E 1 HETATM 15 C C4' ATP . . . EA 3 211.267 216.852 169.033 1 110.24 ? C4' ATP 603 E 1 HETATM 16 O O4' ATP . . . EA 3 212.057 217.778 168.282 1 111.54 ? O4' ATP 603 E 1 HETATM 17 C C3' ATP . . . EA 3 209.997 217.568 169.467 1 111.63 ? C3' ATP 603 E 1 HETATM 18 O O3' ATP . . . EA 3 209.821 217.431 170.884 1 113.76 ? O3' ATP 603 E 1 HETATM 19 C C2' ATP . . . EA 3 210.159 219.017 169.03 1 110.41 ? C2' ATP 603 E 1 HETATM 20 O O2' ATP . . . EA 3 210.221 219.926 170.137 1 112.65 ? O2' ATP 603 E 1 HETATM 21 C C1' ATP . . . EA 3 211.463 219.079 168.25 1 110.85 ? C1' ATP 603 E 1 HETATM 22 N N9 ATP . . . EA 3 211.183 219.469 166.845 1 111 ? N9 ATP 603 E 1 HETATM 23 C C8 ATP . . . EA 3 210.02 219.282 166.194 1 109.15 ? C8 ATP 603 E 1 HETATM 24 N N7 ATP . . . EA 3 210.089 219.751 164.922 1 108.6 ? N7 ATP 603 E 1 HETATM 25 C C5 ATP . . . EA 3 211.325 220.254 164.744 1 113.66 ? C5 ATP 603 E 1 HETATM 26 C C6 ATP . . . EA 3 212.063 220.905 163.636 1 113.29 ? C6 ATP 603 E 1 HETATM 27 N N6 ATP . . . EA 3 211.477 221.116 162.433 1 111.16 ? N6 ATP 603 E 1 HETATM 28 N N1 ATP . . . EA 3 213.341 221.28 163.867 1 113.35 ? N1 ATP 603 E 1 HETATM 29 C C2 ATP . . . EA 3 213.934 221.076 165.058 1 112.2 ? C2 ATP 603 E 1 HETATM 30 N N3 ATP . . . EA 3 213.324 220.493 166.106 1 112.89 ? N3 ATP 603 E 1 HETATM 31 C C4 ATP . . . EA 3 212.042 220.066 166.014 1 113.84 ? C4 ATP 603 E 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #