data_8G9B # _model_server_result.job_id 8s6WI38dK1G3-x5XHvdwFg _model_server_result.datetime_utc '2024-10-11 20:24:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":603}' # _entry.id 8G9B # _exptl.entry_id 8G9B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G9B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 P N N ? 3 U N N ? 3 Z N N ? 3 EA N N ? 3 JA N N ? 3 OA N N ? 3 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 336 A CYS 331 1_555 L C2 IMP . A IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 B SG CYS 336 B CYS 331 1_555 Q C2 IMP . B IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 C SG CYS 336 C CYS 331 1_555 V C2 IMP . C IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale4 D SG CYS 336 D CYS 331 1_555 AA C2 IMP . D IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 E SG CYS 336 E CYS 331 1_555 FA C2 IMP . E IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale6 F SG CYS 336 F CYS 331 1_555 KA C2 IMP . F IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale7 G SG CYS 336 G CYS 331 1_555 PA C2 IMP . G IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 H SG CYS 336 H CYS 331 1_555 UA C2 IMP . H IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G9B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 2 GTP A 1 602 602 GTP GTP . K 3 ATP A 1 603 603 ATP ATP . L 4 IMP A 1 604 604 IMP IMP . M 5 NAD A 1 605 605 NAD NAD . N 2 GTP B 1 601 601 GTP GTP . O 2 GTP B 1 602 602 GTP GTP . P 3 ATP B 1 603 603 ATP ATP . Q 4 IMP B 1 604 604 IMP IMP . R 5 NAD B 1 605 605 NAD NAD . S 2 GTP C 1 601 601 GTP GTP . T 2 GTP C 1 602 602 GTP GTP . U 3 ATP C 1 603 603 ATP ATP . V 4 IMP C 1 604 604 IMP IMP . W 5 NAD C 1 605 605 NAD NAD . X 2 GTP D 1 601 601 GTP GTP . Y 2 GTP D 1 602 602 GTP GTP . Z 3 ATP D 1 603 603 ATP ATP . AA 4 IMP D 1 604 604 IMP IMP . BA 5 NAD D 1 605 605 NAD NAD . CA 2 GTP E 1 601 601 GTP GTP . DA 2 GTP E 1 602 602 GTP GTP . EA 3 ATP E 1 603 603 ATP ATP . FA 4 IMP E 1 604 604 IMP IMP . GA 5 NAD E 1 605 605 NAD NAD . HA 2 GTP F 1 601 601 GTP GTP . IA 2 GTP F 1 602 602 GTP GTP . JA 3 ATP F 1 603 603 ATP ATP . KA 4 IMP F 1 604 604 IMP IMP . LA 5 NAD F 1 605 605 NAD NAD . MA 2 GTP G 1 601 601 GTP GTP . NA 2 GTP G 1 602 602 GTP GTP . OA 3 ATP G 1 603 603 ATP ATP . PA 4 IMP G 1 604 604 IMP IMP . QA 5 NAD G 1 605 605 NAD NAD . RA 2 GTP H 1 601 601 GTP GTP . SA 2 GTP H 1 602 602 GTP GTP . TA 3 ATP H 1 603 603 ATP ATP . UA 4 IMP H 1 604 604 IMP IMP . VA 5 NAD H 1 605 605 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Z 3 125.552 130.136 166.595 1 107.76 ? PG ATP 603 D 1 HETATM 2 O O1G ATP . . . Z 3 126.833 130.48 167.317 1 101.12 ? O1G ATP 603 D 1 HETATM 3 O O2G ATP . . . Z 3 125.3 128.656 166.444 1 101.72 ? O2G ATP 603 D 1 HETATM 4 O O3G ATP . . . Z 3 125.308 130.942 165.341 1 102.44 ? O3G ATP 603 D 1 HETATM 5 P PB ATP . . . Z 3 124.218 129.931 169.043 1 102.64 ? PB ATP 603 D 1 HETATM 6 O O1B ATP . . . Z 3 125.486 129.177 169.364 1 99.08 ? O1B ATP 603 D 1 HETATM 7 O O2B ATP . . . Z 3 123.695 130.97 170.007 1 98.34 ? O2B ATP 603 D 1 HETATM 8 O O3B ATP . . . Z 3 124.396 130.627 167.602 1 100.45 ? O3B ATP 603 D 1 HETATM 9 P PA ATP . . . Z 3 122.219 128.23 170.004 1 97.65 ? PA ATP 603 D 1 HETATM 10 O O1A ATP . . . Z 3 123.051 127.132 170.623 1 95.76 ? O1A ATP 603 D 1 HETATM 11 O O2A ATP . . . Z 3 121.713 129.366 170.86 1 99.04 ? O2A ATP 603 D 1 HETATM 12 O O3A ATP . . . Z 3 123.049 128.858 168.775 1 102.14 ? O3A ATP 603 D 1 HETATM 13 O O5' ATP . . . Z 3 120.957 127.552 169.268 1 97.33 ? O5' ATP 603 D 1 HETATM 14 C C5' ATP . . . Z 3 121.155 126.612 168.214 1 97.38 ? C5' ATP 603 D 1 HETATM 15 C C4' ATP . . . Z 3 119.809 126.224 167.613 1 98.35 ? C4' ATP 603 D 1 HETATM 16 O O4' ATP . . . Z 3 119.059 125.452 168.555 1 98.31 ? O4' ATP 603 D 1 HETATM 17 C C3' ATP . . . Z 3 118.985 127.452 167.256 1 99.45 ? C3' ATP 603 D 1 HETATM 18 O O3' ATP . . . Z 3 118.811 127.518 165.834 1 101.2 ? O3' ATP 603 D 1 HETATM 19 C C2' ATP . . . Z 3 117.667 127.309 168.005 1 99.15 ? C2' ATP 603 D 1 HETATM 20 O O2' ATP . . . Z 3 116.529 127.311 167.133 1 97.96 ? O2' ATP 603 D 1 HETATM 21 C C1' ATP . . . Z 3 117.745 125.983 168.746 1 98.5 ? C1' ATP 603 D 1 HETATM 22 N N9 ATP . . . Z 3 117.491 126.201 170.193 1 98.93 ? N9 ATP 603 D 1 HETATM 23 C C8 ATP . . . Z 3 117.726 127.34 170.871 1 100.46 ? C8 ATP 603 D 1 HETATM 24 N N7 ATP . . . Z 3 117.384 127.211 172.179 1 98.99 ? N7 ATP 603 D 1 HETATM 25 C C5 ATP . . . Z 3 116.917 125.961 172.353 1 98.17 ? C5 ATP 603 D 1 HETATM 26 C C6 ATP . . . Z 3 116.388 125.167 173.487 1 98.64 ? C6 ATP 603 D 1 HETATM 27 N N6 ATP . . . Z 3 116.287 125.699 174.729 1 100.45 ? N6 ATP 603 D 1 HETATM 28 N N1 ATP . . . Z 3 116.009 123.893 173.24 1 100.22 ? N1 ATP 603 D 1 HETATM 29 C C2 ATP . . . Z 3 116.104 123.353 172.011 1 101.22 ? C2 ATP 603 D 1 HETATM 30 N N3 ATP . . . Z 3 116.574 124.014 170.938 1 101.28 ? N3 ATP 603 D 1 HETATM 31 C C4 ATP . . . Z 3 116.99 125.299 171.041 1 98.85 ? C4 ATP 603 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #