data_8G9B # _model_server_result.job_id oGE08_p8Q9fHPTE9ElDz8g _model_server_result.datetime_utc '2024-10-11 20:33:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":605}' # _entry.id 8G9B # _exptl.entry_id 8G9B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G9B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 R N N ? 5 W N N ? 5 BA N N ? 5 GA N N ? 5 LA N N ? 5 QA N N ? 5 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 336 A CYS 331 1_555 L C2 IMP . A IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 B SG CYS 336 B CYS 331 1_555 Q C2 IMP . B IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 C SG CYS 336 C CYS 331 1_555 V C2 IMP . C IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale4 D SG CYS 336 D CYS 331 1_555 AA C2 IMP . D IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 E SG CYS 336 E CYS 331 1_555 FA C2 IMP . E IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale6 F SG CYS 336 F CYS 331 1_555 KA C2 IMP . F IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale7 G SG CYS 336 G CYS 331 1_555 PA C2 IMP . G IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 H SG CYS 336 H CYS 331 1_555 UA C2 IMP . H IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G9B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 2 GTP A 1 602 602 GTP GTP . K 3 ATP A 1 603 603 ATP ATP . L 4 IMP A 1 604 604 IMP IMP . M 5 NAD A 1 605 605 NAD NAD . N 2 GTP B 1 601 601 GTP GTP . O 2 GTP B 1 602 602 GTP GTP . P 3 ATP B 1 603 603 ATP ATP . Q 4 IMP B 1 604 604 IMP IMP . R 5 NAD B 1 605 605 NAD NAD . S 2 GTP C 1 601 601 GTP GTP . T 2 GTP C 1 602 602 GTP GTP . U 3 ATP C 1 603 603 ATP ATP . V 4 IMP C 1 604 604 IMP IMP . W 5 NAD C 1 605 605 NAD NAD . X 2 GTP D 1 601 601 GTP GTP . Y 2 GTP D 1 602 602 GTP GTP . Z 3 ATP D 1 603 603 ATP ATP . AA 4 IMP D 1 604 604 IMP IMP . BA 5 NAD D 1 605 605 NAD NAD . CA 2 GTP E 1 601 601 GTP GTP . DA 2 GTP E 1 602 602 GTP GTP . EA 3 ATP E 1 603 603 ATP ATP . FA 4 IMP E 1 604 604 IMP IMP . GA 5 NAD E 1 605 605 NAD NAD . HA 2 GTP F 1 601 601 GTP GTP . IA 2 GTP F 1 602 602 GTP GTP . JA 3 ATP F 1 603 603 ATP ATP . KA 4 IMP F 1 604 604 IMP IMP . LA 5 NAD F 1 605 605 NAD NAD . MA 2 GTP G 1 601 601 GTP GTP . NA 2 GTP G 1 602 602 GTP GTP . OA 3 ATP G 1 603 603 ATP ATP . PA 4 IMP G 1 604 604 IMP IMP . QA 5 NAD G 1 605 605 NAD NAD . RA 2 GTP H 1 601 601 GTP GTP . SA 2 GTP H 1 602 602 GTP GTP . TA 3 ATP H 1 603 603 ATP ATP . UA 4 IMP H 1 604 604 IMP IMP . VA 5 NAD H 1 605 605 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . GA 5 165.638 203.063 146.933 1 64.15 ? PA NAD 605 E 1 HETATM 2 O O1A NAD . . . GA 5 165.412 202.663 145.495 1 57.56 ? O1A NAD 605 E 1 HETATM 3 O O2A NAD . . . GA 5 166.438 204.303 147.254 1 56.99 ? O2A NAD 605 E 1 HETATM 4 O O5B NAD . . . GA 5 164.203 203.19 147.652 1 57.05 ? O5B NAD 605 E 1 HETATM 5 C C5B NAD . . . GA 5 163.406 204.36 147.476 1 53.7 ? C5B NAD 605 E 1 HETATM 6 C C4B NAD . . . GA 5 162.268 204.057 146.509 1 52.37 ? C4B NAD 605 E 1 HETATM 7 O O4B NAD . . . GA 5 161.746 205.278 145.98 1 63.49 ? O4B NAD 605 E 1 HETATM 8 C C3B NAD . . . GA 5 162.747 203.208 145.34 1 48.75 ? C3B NAD 605 E 1 HETATM 9 O O3B NAD . . . GA 5 162.092 201.933 145.368 1 55.31 ? O3B NAD 605 E 1 HETATM 10 C C2B NAD . . . GA 5 162.434 204.005 144.081 1 50.46 ? C2B NAD 605 E 1 HETATM 11 O O2B NAD . . . GA 5 161.528 203.324 143.204 1 53.51 ? O2B NAD 605 E 1 HETATM 12 C C1B NAD . . . GA 5 161.809 205.31 144.552 1 57.94 ? C1B NAD 605 E 1 HETATM 13 N N9A NAD . . . GA 5 162.645 206.455 144.113 1 55.21 ? N9A NAD 605 E 1 HETATM 14 C C8A NAD . . . GA 5 163.99 206.474 144.06 1 54.05 ? C8A NAD 605 E 1 HETATM 15 N N7A NAD . . . GA 5 164.447 207.673 143.615 1 54.83 ? N7A NAD 605 E 1 HETATM 16 C C5A NAD . . . GA 5 163.374 208.449 143.374 1 52.49 ? C5A NAD 605 E 1 HETATM 17 C C6A NAD . . . GA 5 163.142 209.83 142.888 1 52.14 ? C6A NAD 605 E 1 HETATM 18 N N6A NAD . . . GA 5 164.176 210.642 142.562 1 54.11 ? N6A NAD 605 E 1 HETATM 19 N N1A NAD . . . GA 5 161.862 210.252 142.781 1 53.46 ? N1A NAD 605 E 1 HETATM 20 C C2A NAD . . . GA 5 160.825 209.456 143.102 1 54.18 ? C2A NAD 605 E 1 HETATM 21 N N3A NAD . . . GA 5 160.963 208.195 143.549 1 57.17 ? N3A NAD 605 E 1 HETATM 22 C C4A NAD . . . GA 5 162.189 207.642 143.704 1 54.93 ? C4A NAD 605 E 1 HETATM 23 O O3 NAD . . . GA 5 166.306 201.817 147.703 1 57.68 ? O3 NAD 605 E 1 HETATM 24 P PN NAD . . . GA 5 165.791 200.317 147.426 1 62.26 ? PN NAD 605 E 1 HETATM 25 O O1N NAD . . . GA 5 166.426 199.83 146.146 1 56.33 ? O1N NAD 605 E 1 HETATM 26 O O2N NAD . . . GA 5 164.288 200.298 147.577 1 51.58 ? O2N NAD 605 E 1 HETATM 27 O O5D NAD . . . GA 5 166.431 199.489 148.65 1 57.25 ? O5D NAD 605 E 1 HETATM 28 C C5D NAD . . . GA 5 166.726 200.136 149.887 1 49.98 ? C5D NAD 605 E 1 HETATM 29 C C4D NAD . . . GA 5 168.11 199.715 150.363 1 54.78 ? C4D NAD 605 E 1 HETATM 30 O O4D NAD . . . GA 5 168.154 198.295 150.529 1 60.31 ? O4D NAD 605 E 1 HETATM 31 C C3D NAD . . . GA 5 169.181 200.101 149.353 1 49.48 ? C3D NAD 605 E 1 HETATM 32 O O3D NAD . . . GA 5 170.052 201.088 149.921 1 50.72 ? O3D NAD 605 E 1 HETATM 33 C C2D NAD . . . GA 5 169.906 198.811 148.993 1 50.2 ? C2D NAD 605 E 1 HETATM 34 O O2D NAD . . . GA 5 171.302 198.85 149.317 1 52.31 ? O2D NAD 605 E 1 HETATM 35 C C1D NAD . . . GA 5 169.226 197.706 149.788 1 54.72 ? C1D NAD 605 E 1 HETATM 36 N N1N NAD . . . GA 5 168.7 196.692 148.871 1 53.82 ? N1N NAD 605 E 1 HETATM 37 C C2N NAD . . . GA 5 169.47 196.245 147.871 1 51.88 ? C2N NAD 605 E 1 HETATM 38 C C3N NAD . . . GA 5 168.997 195.283 146.987 1 53.36 ? C3N NAD 605 E 1 HETATM 39 C C7N NAD . . . GA 5 169.868 194.79 145.87 1 54.93 ? C7N NAD 605 E 1 HETATM 40 O O7N NAD . . . GA 5 171.026 194.487 146.105 1 58.05 ? O7N NAD 605 E 1 HETATM 41 N N7N NAD . . . GA 5 169.351 194.696 144.646 1 47.41 ? N7N NAD 605 E 1 HETATM 42 C C4N NAD . . . GA 5 167.712 194.783 147.144 1 52.25 ? C4N NAD 605 E 1 HETATM 43 C C5N NAD . . . GA 5 166.934 195.263 148.189 1 55.58 ? C5N NAD 605 E 1 HETATM 44 C C6N NAD . . . GA 5 167.457 196.225 149.044 1 52.58 ? C6N NAD 605 E 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #