data_8G9B # _model_server_result.job_id AeOSE4PA1e_jZIf2Dk8uuQ _model_server_result.datetime_utc '2024-10-11 20:24:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":605}' # _entry.id 8G9B # _exptl.entry_id 8G9B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G9B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 R N N ? 5 W N N ? 5 BA N N ? 5 GA N N ? 5 LA N N ? 5 QA N N ? 5 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 336 A CYS 331 1_555 L C2 IMP . A IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 B SG CYS 336 B CYS 331 1_555 Q C2 IMP . B IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 C SG CYS 336 C CYS 331 1_555 V C2 IMP . C IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale4 D SG CYS 336 D CYS 331 1_555 AA C2 IMP . D IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 E SG CYS 336 E CYS 331 1_555 FA C2 IMP . E IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale6 F SG CYS 336 F CYS 331 1_555 KA C2 IMP . F IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale7 G SG CYS 336 G CYS 331 1_555 PA C2 IMP . G IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 H SG CYS 336 H CYS 331 1_555 UA C2 IMP . H IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G9B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 2 GTP A 1 602 602 GTP GTP . K 3 ATP A 1 603 603 ATP ATP . L 4 IMP A 1 604 604 IMP IMP . M 5 NAD A 1 605 605 NAD NAD . N 2 GTP B 1 601 601 GTP GTP . O 2 GTP B 1 602 602 GTP GTP . P 3 ATP B 1 603 603 ATP ATP . Q 4 IMP B 1 604 604 IMP IMP . R 5 NAD B 1 605 605 NAD NAD . S 2 GTP C 1 601 601 GTP GTP . T 2 GTP C 1 602 602 GTP GTP . U 3 ATP C 1 603 603 ATP ATP . V 4 IMP C 1 604 604 IMP IMP . W 5 NAD C 1 605 605 NAD NAD . X 2 GTP D 1 601 601 GTP GTP . Y 2 GTP D 1 602 602 GTP GTP . Z 3 ATP D 1 603 603 ATP ATP . AA 4 IMP D 1 604 604 IMP IMP . BA 5 NAD D 1 605 605 NAD NAD . CA 2 GTP E 1 601 601 GTP GTP . DA 2 GTP E 1 602 602 GTP GTP . EA 3 ATP E 1 603 603 ATP ATP . FA 4 IMP E 1 604 604 IMP IMP . GA 5 NAD E 1 605 605 NAD NAD . HA 2 GTP F 1 601 601 GTP GTP . IA 2 GTP F 1 602 602 GTP GTP . JA 3 ATP F 1 603 603 ATP ATP . KA 4 IMP F 1 604 604 IMP IMP . LA 5 NAD F 1 605 605 NAD NAD . MA 2 GTP G 1 601 601 GTP GTP . NA 2 GTP G 1 602 602 GTP GTP . OA 3 ATP G 1 603 603 ATP ATP . PA 4 IMP G 1 604 604 IMP IMP . QA 5 NAD G 1 605 605 NAD NAD . RA 2 GTP H 1 601 601 GTP GTP . SA 2 GTP H 1 602 602 GTP GTP . TA 3 ATP H 1 603 603 ATP ATP . UA 4 IMP H 1 604 604 IMP IMP . VA 5 NAD H 1 605 605 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . M 5 165.758 134.067 190.699 1 69.3 ? PA NAD 605 A 1 HETATM 2 O O1A NAD . . . M 5 165.455 134.618 192.072 1 51.75 ? O1A NAD 605 A 1 HETATM 3 O O2A NAD . . . M 5 167.087 133.402 190.43 1 54.79 ? O2A NAD 605 A 1 HETATM 4 O O5B NAD . . . M 5 164.59 133.032 190.303 1 58.12 ? O5B NAD 605 A 1 HETATM 5 C C5B NAD . . . M 5 163.412 133.487 189.641 1 48.96 ? C5B NAD 605 A 1 HETATM 6 C C4B NAD . . . M 5 162.255 133.525 190.632 1 51.21 ? C4B NAD 605 A 1 HETATM 7 O O4B NAD . . . M 5 161.881 132.192 190.993 1 60.42 ? O4B NAD 605 A 1 HETATM 8 C C3B NAD . . . M 5 162.641 134.263 191.905 1 50.45 ? C3B NAD 605 A 1 HETATM 9 O O3B NAD . . . M 5 161.886 135.477 192.009 1 58.91 ? O3B NAD 605 A 1 HETATM 10 C C2B NAD . . . M 5 162.367 133.298 193.051 1 52.57 ? C2B NAD 605 A 1 HETATM 11 O O2B NAD . . . M 5 161.404 133.804 193.986 1 55.24 ? O2B NAD 605 A 1 HETATM 12 C C1B NAD . . . M 5 161.841 132.021 192.413 1 58.73 ? C1B NAD 605 A 1 HETATM 13 N N9A NAD . . . M 5 162.698 130.876 192.81 1 53.33 ? N9A NAD 605 A 1 HETATM 14 C C8A NAD . . . M 5 164.042 130.84 192.742 1 55.12 ? C8A NAD 605 A 1 HETATM 15 N N7A NAD . . . M 5 164.523 129.648 193.182 1 57.67 ? N7A NAD 605 A 1 HETATM 16 C C5A NAD . . . M 5 163.468 128.896 193.543 1 53.91 ? C5A NAD 605 A 1 HETATM 17 C C6A NAD . . . M 5 163.265 127.534 194.092 1 52.95 ? C6A NAD 605 A 1 HETATM 18 N N6A NAD . . . M 5 164.316 126.718 194.348 1 54.41 ? N6A NAD 605 A 1 HETATM 19 N N1A NAD . . . M 5 161.996 127.134 194.328 1 53.56 ? N1A NAD 605 A 1 HETATM 20 C C2A NAD . . . M 5 160.943 127.934 194.077 1 53.31 ? C2A NAD 605 A 1 HETATM 21 N N3A NAD . . . M 5 161.054 129.179 193.58 1 53.6 ? N3A NAD 605 A 1 HETATM 22 C C4A NAD . . . M 5 162.267 129.71 193.297 1 53.25 ? C4A NAD 605 A 1 HETATM 23 O O3 NAD . . . M 5 165.562 135.252 189.626 1 67.52 ? O3 NAD 605 A 1 HETATM 24 P PN NAD . . . M 5 165.878 136.779 190.026 1 71.57 ? PN NAD 605 A 1 HETATM 25 O O1N NAD . . . M 5 166.905 136.776 191.133 1 45.3 ? O1N NAD 605 A 1 HETATM 26 O O2N NAD . . . M 5 164.564 137.498 190.219 1 62.82 ? O2N NAD 605 A 1 HETATM 27 O O5D NAD . . . M 5 166.577 137.357 188.695 1 55.37 ? O5D NAD 605 A 1 HETATM 28 C C5D NAD . . . M 5 167.049 136.47 187.682 1 52.21 ? C5D NAD 605 A 1 HETATM 29 C C4D NAD . . . M 5 168.345 137.01 187.092 1 53.74 ? C4D NAD 605 A 1 HETATM 30 O O4D NAD . . . M 5 168.223 138.415 186.852 1 56.72 ? O4D NAD 605 A 1 HETATM 31 C C3D NAD . . . M 5 169.516 136.798 188.04 1 50.63 ? C3D NAD 605 A 1 HETATM 32 O O3D NAD . . . M 5 170.454 135.888 187.452 1 54.76 ? O3D NAD 605 A 1 HETATM 33 C C2D NAD . . . M 5 170.111 138.178 188.292 1 49.95 ? C2D NAD 605 A 1 HETATM 34 O O2D NAD . . . M 5 171.484 138.272 187.892 1 55.16 ? O2D NAD 605 A 1 HETATM 35 C C1D NAD . . . M 5 169.271 139.155 187.483 1 52.18 ? C1D NAD 605 A 1 HETATM 36 N N1N NAD . . . M 5 168.699 140.169 188.37 1 54.39 ? N1N NAD 605 A 1 HETATM 37 C C2N NAD . . . M 5 169.458 140.704 189.334 1 52.88 ? C2N NAD 605 A 1 HETATM 38 C C3N NAD . . . M 5 168.942 141.669 190.19 1 52.65 ? C3N NAD 605 A 1 HETATM 39 C C7N NAD . . . M 5 169.805 142.26 191.265 1 54.19 ? C7N NAD 605 A 1 HETATM 40 O O7N NAD . . . M 5 170.96 142.558 191.006 1 56.14 ? O7N NAD 605 A 1 HETATM 41 N N7N NAD . . . M 5 169.288 142.442 192.478 1 48.94 ? N7N NAD 605 A 1 HETATM 42 C C4N NAD . . . M 5 167.625 142.082 190.042 1 51.95 ? C4N NAD 605 A 1 HETATM 43 C C5N NAD . . . M 5 166.859 141.512 189.035 1 54.31 ? C5N NAD 605 A 1 HETATM 44 C C6N NAD . . . M 5 167.425 140.55 188.206 1 52.55 ? C6N NAD 605 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #