data_8G9B # _model_server_result.job_id m2dayFXREnkkaH1s6qkXLQ _model_server_result.datetime_utc '2024-10-11 20:25:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":605}' # _entry.id 8G9B # _exptl.entry_id 8G9B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G9B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 R N N ? 5 W N N ? 5 BA N N ? 5 GA N N ? 5 LA N N ? 5 QA N N ? 5 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 336 A CYS 331 1_555 L C2 IMP . A IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 B SG CYS 336 B CYS 331 1_555 Q C2 IMP . B IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 C SG CYS 336 C CYS 331 1_555 V C2 IMP . C IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale4 D SG CYS 336 D CYS 331 1_555 AA C2 IMP . D IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 E SG CYS 336 E CYS 331 1_555 FA C2 IMP . E IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale6 F SG CYS 336 F CYS 331 1_555 KA C2 IMP . F IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale7 G SG CYS 336 G CYS 331 1_555 PA C2 IMP . G IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 H SG CYS 336 H CYS 331 1_555 UA C2 IMP . H IMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G9B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 2 GTP A 1 602 602 GTP GTP . K 3 ATP A 1 603 603 ATP ATP . L 4 IMP A 1 604 604 IMP IMP . M 5 NAD A 1 605 605 NAD NAD . N 2 GTP B 1 601 601 GTP GTP . O 2 GTP B 1 602 602 GTP GTP . P 3 ATP B 1 603 603 ATP ATP . Q 4 IMP B 1 604 604 IMP IMP . R 5 NAD B 1 605 605 NAD NAD . S 2 GTP C 1 601 601 GTP GTP . T 2 GTP C 1 602 602 GTP GTP . U 3 ATP C 1 603 603 ATP ATP . V 4 IMP C 1 604 604 IMP IMP . W 5 NAD C 1 605 605 NAD NAD . X 2 GTP D 1 601 601 GTP GTP . Y 2 GTP D 1 602 602 GTP GTP . Z 3 ATP D 1 603 603 ATP ATP . AA 4 IMP D 1 604 604 IMP IMP . BA 5 NAD D 1 605 605 NAD NAD . CA 2 GTP E 1 601 601 GTP GTP . DA 2 GTP E 1 602 602 GTP GTP . EA 3 ATP E 1 603 603 ATP ATP . FA 4 IMP E 1 604 604 IMP IMP . GA 5 NAD E 1 605 605 NAD NAD . HA 2 GTP F 1 601 601 GTP GTP . IA 2 GTP F 1 602 602 GTP GTP . JA 3 ATP F 1 603 603 ATP ATP . KA 4 IMP F 1 604 604 IMP IMP . LA 5 NAD F 1 605 605 NAD NAD . MA 2 GTP G 1 601 601 GTP GTP . NA 2 GTP G 1 602 602 GTP GTP . OA 3 ATP G 1 603 603 ATP ATP . PA 4 IMP G 1 604 604 IMP IMP . QA 5 NAD G 1 605 605 NAD NAD . RA 2 GTP H 1 601 601 GTP GTP . SA 2 GTP H 1 602 602 GTP GTP . TA 3 ATP H 1 603 603 ATP ATP . UA 4 IMP H 1 604 604 IMP IMP . VA 5 NAD H 1 605 605 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . VA 5 133.589 165.618 146.918 1 70.6 ? PA NAD 605 H 1 HETATM 2 O O1A NAD . . . VA 5 133.217 166.532 145.774 1 62.21 ? O1A NAD 605 H 1 HETATM 3 O O2A NAD . . . VA 5 132.583 165.325 148.005 1 63.23 ? O2A NAD 605 H 1 HETATM 4 O O5B NAD . . . VA 5 134.083 164.216 146.301 1 63.6 ? O5B NAD 605 H 1 HETATM 5 C C5B NAD . . . VA 5 133.736 162.985 146.933 1 54.57 ? C5B NAD 605 H 1 HETATM 6 C C4B NAD . . . VA 5 133.587 161.873 145.899 1 55.85 ? C4B NAD 605 H 1 HETATM 7 O O4B NAD . . . VA 5 132.201 161.61 145.664 1 66.21 ? O4B NAD 605 H 1 HETATM 8 C C3B NAD . . . VA 5 134.225 162.235 144.565 1 57.07 ? C3B NAD 605 H 1 HETATM 9 O O3B NAD . . . VA 5 135.361 161.393 144.326 1 59.38 ? O3B NAD 605 H 1 HETATM 10 C C2B NAD . . . VA 5 133.134 162.067 143.516 1 56.95 ? C2B NAD 605 H 1 HETATM 11 O O2B NAD . . . VA 5 133.471 161.096 142.516 1 55.8 ? O2B NAD 605 H 1 HETATM 12 C C1B NAD . . . VA 5 131.891 161.617 144.268 1 64.26 ? C1B NAD 605 H 1 HETATM 13 N N9A NAD . . . VA 5 130.773 162.558 144.005 1 59.81 ? N9A NAD 605 H 1 HETATM 14 C C8A NAD . . . VA 5 130.832 163.899 144.101 1 60.37 ? C8A NAD 605 H 1 HETATM 15 N N7A NAD . . . VA 5 129.637 164.466 143.794 1 59.4 ? N7A NAD 605 H 1 HETATM 16 C C5A NAD . . . VA 5 128.784 163.47 143.492 1 55.9 ? C5A NAD 605 H 1 HETATM 17 C C6A NAD . . . VA 5 127.364 163.368 143.081 1 58.46 ? C6A NAD 605 H 1 HETATM 18 N N6A NAD . . . VA 5 126.597 164.475 142.929 1 59.32 ? N6A NAD 605 H 1 HETATM 19 N N1A NAD . . . VA 5 126.859 162.133 142.864 1 65.45 ? N1A NAD 605 H 1 HETATM 20 C C2A NAD . . . VA 5 127.609 161.026 143.013 1 64.18 ? C2A NAD 605 H 1 HETATM 21 N N3A NAD . . . VA 5 128.903 161.044 143.382 1 63.2 ? N3A NAD 605 H 1 HETATM 22 C C4A NAD . . . VA 5 129.537 162.215 143.633 1 57.56 ? C4A NAD 605 H 1 HETATM 23 O O3 NAD . . . VA 5 134.923 166.194 147.611 1 67.89 ? O3 NAD 605 H 1 HETATM 24 P PN NAD . . . VA 5 136.38 165.756 147.082 1 88.06 ? PN NAD 605 H 1 HETATM 25 O O1N NAD . . . VA 5 136.505 166.177 145.637 1 67.84 ? O1N NAD 605 H 1 HETATM 26 O O2N NAD . . . VA 5 136.612 164.316 147.47 1 62.09 ? O2N NAD 605 H 1 HETATM 27 O O5D NAD . . . VA 5 137.363 166.68 147.962 1 68.7 ? O5D NAD 605 H 1 HETATM 28 C C5D NAD . . . VA 5 137.788 166.257 149.256 1 59.92 ? C5D NAD 605 H 1 HETATM 29 C C4D NAD . . . VA 5 137.662 167.413 150.24 1 59.5 ? C4D NAD 605 H 1 HETATM 30 O O4D NAD . . . VA 5 138.874 168.172 150.255 1 64.23 ? O4D NAD 605 H 1 HETATM 31 C C3D NAD . . . VA 5 136.527 168.35 149.855 1 56.05 ? C3D NAD 605 H 1 HETATM 32 O O3D NAD . . . VA 5 135.51 168.319 150.864 1 61.23 ? O3D NAD 605 H 1 HETATM 33 C C2D NAD . . . VA 5 137.154 169.729 149.693 1 59.48 ? C2D NAD 605 H 1 HETATM 34 O O2D NAD . . . VA 5 136.589 170.705 150.579 1 57.21 ? O2D NAD 605 H 1 HETATM 35 C C1D NAD . . . VA 5 138.636 169.558 149.996 1 62.96 ? C1D NAD 605 H 1 HETATM 36 N N1N NAD . . . VA 5 139.426 169.992 148.842 1 62.27 ? N1N NAD 605 H 1 HETATM 37 C C2N NAD . . . VA 5 140.48 169.265 148.45 1 58.78 ? C2N NAD 605 H 1 HETATM 38 C C3N NAD . . . VA 5 141.245 169.658 147.358 1 54.31 ? C3N NAD 605 H 1 HETATM 39 C C7N NAD . . . VA 5 142.423 168.836 146.927 1 57.91 ? C7N NAD 605 H 1 HETATM 40 O O7N NAD . . . VA 5 142.813 168.91 145.773 1 65.29 ? O7N NAD 605 H 1 HETATM 41 N N7N NAD . . . VA 5 143.015 168.045 147.82 1 63.32 ? N7N NAD 605 H 1 HETATM 42 C C4N NAD . . . VA 5 140.911 170.815 146.669 1 58.6 ? C4N NAD 605 H 1 HETATM 43 C C5N NAD . . . VA 5 139.815 171.551 147.095 1 60.92 ? C5N NAD 605 H 1 HETATM 44 C C6N NAD . . . VA 5 139.084 171.113 148.194 1 60.61 ? C6N NAD 605 H 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #