data_8G9V # _model_server_result.job_id acP-ZXO2K8VdEbsjVmckmg _model_server_result.datetime_utc '2024-12-21 12:31:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":401}' # _entry.id 8G9V # _exptl.entry_id 8G9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.05 _cell.angle_gamma 90 _cell.entry_id 8G9V _cell.length_a 96.15 _cell.length_b 161.56 _cell.length_c 100.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N,O,P,Q,TA,UA 1 1 C,D,R,S,T,U,V,W,X,Y,Z,AA,VA,WA 2 1 E,F,BA,CA,DA,EA,FA,GA,HA,IA,JA,XA,YA 3 1 G,H,KA,LA,MA,NA,OA,PA,QA,RA,SA,ZA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 N N N ? 2 R N N ? 2 Y N N ? 2 CA N N ? 2 FA N N ? 2 KA N N ? 2 OA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 331 n n PA O2A NAD sing 332 n n PA O5B NAD sing 333 n n PA O3 NAD sing 334 n n O2A HOA2 NAD sing 335 n n O5B C5B NAD sing 336 n n C5B C4B NAD sing 337 n n C5B H51A NAD sing 338 n n C5B H52A NAD sing 339 n n C4B O4B NAD sing 340 n n C4B C3B NAD sing 341 n n C4B H4B NAD sing 342 n n O4B C1B NAD sing 343 n n C3B O3B NAD sing 344 n n C3B C2B NAD sing 345 n n C3B H3B NAD sing 346 n n O3B HO3A NAD sing 347 n n C2B O2B NAD sing 348 n n C2B C1B NAD sing 349 n n C2B H2B NAD sing 350 n n O2B HO2A NAD sing 351 n n C1B N9A NAD sing 352 n n C1B H1B NAD sing 353 n n N9A C8A NAD sing 354 n y N9A C4A NAD sing 355 n y C8A N7A NAD doub 356 n y C8A H8A NAD sing 357 n n N7A C5A NAD sing 358 n y C5A C6A NAD sing 359 n y C5A C4A NAD doub 360 n y C6A N6A NAD sing 361 n n C6A N1A NAD doub 362 n y N6A H61A NAD sing 363 n n N6A H62A NAD sing 364 n n N1A C2A NAD sing 365 n y C2A N3A NAD doub 366 n y C2A H2A NAD sing 367 n n N3A C4A NAD sing 368 n y O3 PN NAD sing 369 n n PN O1N NAD doub 370 n n PN O2N NAD sing 371 n n PN O5D NAD sing 372 n n O5D C5D NAD sing 373 n n C5D C4D NAD sing 374 n n C5D H51N NAD sing 375 n n C5D H52N NAD sing 376 n n C4D O4D NAD sing 377 n n C4D C3D NAD sing 378 n n C4D H4D NAD sing 379 n n O4D C1D NAD sing 380 n n C3D O3D NAD sing 381 n n C3D C2D NAD sing 382 n n C3D H3D NAD sing 383 n n O3D HO3N NAD sing 384 n n C2D O2D NAD sing 385 n n C2D C1D NAD sing 386 n n C2D H2D NAD sing 387 n n O2D HO2N NAD sing 388 n n C1D N1N NAD sing 389 n n C1D H1D NAD sing 390 n n N1N C2N NAD sing 391 n y N1N C6N NAD doub 392 n y C2N C3N NAD doub 393 n y C2N H2N NAD sing 394 n n C3N C7N NAD sing 395 n n C3N C4N NAD sing 396 n y C7N O7N NAD doub 397 n n C7N N7N NAD sing 398 n n N7N H71N NAD sing 399 n n N7N H72N NAD sing 400 n n C4N C5N NAD doub 401 n y C4N H4N NAD sing 402 n n C5N C6N NAD sing 403 n y C5N H5N NAD sing 404 n n C6N H6N NAD sing 405 n n # _atom_sites.entry_id 8G9V _atom_sites.fract_transf_matrix[1][1] 0.0104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000919 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 401 301 NAD NAD . J 3 YYC A 1 402 401 YYC PFE . K 4 CE1 A 1 403 501 CE1 C12 . L 5 SO4 A 1 404 6 SO4 SO4 . M 5 SO4 A 1 405 11 SO4 SO4 . N 2 NAD B 1 401 301 NAD NAD . O 3 YYC B 1 402 401 YYC PFE . P 5 SO4 B 1 403 4 SO4 SO4 . Q 5 SO4 B 1 404 13 SO4 SO4 . R 2 NAD C 1 401 301 NAD NAD . S 3 YYC C 1 402 401 YYC PFE . T 4 CE1 C 1 403 501 CE1 C12 . U 5 SO4 C 1 404 2 SO4 SO4 . V 5 SO4 C 1 405 5 SO4 SO4 . W 5 SO4 C 1 406 8 SO4 SO4 . X 5 SO4 C 1 407 15 SO4 SO4 . Y 2 NAD D 1 401 301 NAD NAD . Z 3 YYC D 1 402 401 YYC PFE . AA 4 CE1 D 1 403 501 CE1 C12 . BA 4 CE1 E 1 601 601 CE1 C12 . CA 2 NAD E 1 602 301 NAD NAD . DA 3 YYC E 1 603 401 YYC PFE . EA 5 SO4 E 1 604 12 SO4 SO4 . FA 2 NAD F 1 401 301 NAD NAD . GA 3 YYC F 1 402 401 YYC PFE . HA 5 SO4 F 1 403 1 SO4 SO4 . IA 5 SO4 F 1 404 3 SO4 SO4 . JA 5 SO4 F 1 405 10 SO4 SO4 . KA 2 NAD G 1 401 301 NAD NAD . LA 3 YYC G 1 402 401 YYC PFE . MA 5 SO4 G 1 403 7 SO4 SO4 . NA 5 SO4 G 1 404 14 SO4 SO4 . OA 2 NAD H 1 401 301 NAD NAD . PA 3 YYC H 1 402 401 YYC PFE . QA 5 SO4 H 1 403 9 SO4 SO4 . RA 5 SO4 H 1 404 16 SO4 SO4 . SA 5 SO4 H 1 405 17 SO4 SO4 . TA 6 HOH A 1 501 3 HOH HOH . TA 6 HOH A 2 502 8 HOH HOH . TA 6 HOH A 3 503 5 HOH HOH . TA 6 HOH A 4 504 18 HOH HOH . UA 6 HOH B 1 501 22 HOH HOH . UA 6 HOH B 2 502 21 HOH HOH . UA 6 HOH B 3 503 24 HOH HOH . UA 6 HOH B 4 504 7 HOH HOH . UA 6 HOH B 5 505 15 HOH HOH . VA 6 HOH C 1 501 10 HOH HOH . VA 6 HOH C 2 502 17 HOH HOH . VA 6 HOH C 3 503 13 HOH HOH . WA 6 HOH D 1 501 1 HOH HOH . WA 6 HOH D 2 502 23 HOH HOH . WA 6 HOH D 3 503 12 HOH HOH . WA 6 HOH D 4 504 19 HOH HOH . XA 6 HOH E 1 701 2 HOH HOH . XA 6 HOH E 2 702 14 HOH HOH . YA 6 HOH F 1 501 4 HOH HOH . YA 6 HOH F 2 502 16 HOH HOH . YA 6 HOH F 3 503 11 HOH HOH . YA 6 HOH F 4 504 9 HOH HOH . ZA 6 HOH H 1 501 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . Y 2 -23.224 38.907 4.977 1 46.06 ? PA NAD 401 D 1 HETATM 2 O O1A NAD . . . Y 2 -23.451 40.204 5.66 1 46.03 ? O1A NAD 401 D 1 HETATM 3 O O2A NAD . . . Y 2 -22.274 38.06 5.85 1 46.45 ? O2A NAD 401 D 1 HETATM 4 O O5B NAD . . . Y 2 -24.637 38.107 4.679 1 45.66 ? O5B NAD 401 D 1 HETATM 5 C C5B NAD . . . Y 2 -24.728 36.746 4.206 1 45.65 ? C5B NAD 401 D 1 HETATM 6 C C4B NAD . . . Y 2 -25.959 36.081 4.77 1 45.68 ? C4B NAD 401 D 1 HETATM 7 O O4B NAD . . . Y 2 -26.198 34.827 4.088 1 46.11 ? O4B NAD 401 D 1 HETATM 8 C C3B NAD . . . Y 2 -25.919 35.763 6.275 1 45.55 ? C3B NAD 401 D 1 HETATM 9 O O3B NAD . . . Y 2 -27.103 36.209 6.922 1 45.35 ? O3B NAD 401 D 1 HETATM 10 C C2B NAD . . . Y 2 -25.83 34.235 6.31 1 46.15 ? C2B NAD 401 D 1 HETATM 11 O O2B NAD . . . Y 2 -26.341 33.63 7.497 1 46.43 ? O2B NAD 401 D 1 HETATM 12 C C1B NAD . . . Y 2 -26.607 33.873 5.048 1 46.36 ? C1B NAD 401 D 1 HETATM 13 N N9A NAD . . . Y 2 -26.358 32.518 4.551 1 46.54 ? N9A NAD 401 D 1 HETATM 14 C C8A NAD . . . Y 2 -25.144 31.891 4.461 1 46.76 ? C8A NAD 401 D 1 HETATM 15 N N7A NAD . . . Y 2 -25.223 30.602 4.229 1 46.91 ? N7A NAD 401 D 1 HETATM 16 C C5A NAD . . . Y 2 -26.587 30.368 4.139 1 46.85 ? C5A NAD 401 D 1 HETATM 17 C C6A NAD . . . Y 2 -27.332 29.205 3.883 1 47 ? C6A NAD 401 D 1 HETATM 18 N N6A NAD . . . Y 2 -26.801 27.976 3.836 1 47.16 ? N6A NAD 401 D 1 HETATM 19 N N1A NAD . . . Y 2 -28.669 29.337 3.732 1 46.84 ? N1A NAD 401 D 1 HETATM 20 C C2A NAD . . . Y 2 -29.213 30.546 3.871 1 46.81 ? C2A NAD 401 D 1 HETATM 21 N N3A NAD . . . Y 2 -28.621 31.701 4.183 1 47.13 ? N3A NAD 401 D 1 HETATM 22 C C4A NAD . . . Y 2 -27.297 31.546 4.3 1 46.87 ? C4A NAD 401 D 1 HETATM 23 O O3 NAD . . . Y 2 -22.472 39.171 3.599 1 45.4 ? O3 NAD 401 D 1 HETATM 24 P PN NAD . . . Y 2 -22.907 39.899 2.245 1 44.71 ? PN NAD 401 D 1 HETATM 25 O O1N NAD . . . Y 2 -24.14 40.676 2.497 1 44.9 ? O1N NAD 401 D 1 HETATM 26 O O2N NAD . . . Y 2 -21.733 40.604 1.689 1 44.79 ? O2N NAD 401 D 1 HETATM 27 O O5D NAD . . . Y 2 -23.173 38.599 1.364 1 43.66 ? O5D NAD 401 D 1 HETATM 28 C C5D NAD . . . Y 2 -24.256 38.541 0.425 1 43.43 ? C5D NAD 401 D 1 HETATM 29 C C4D NAD . . . Y 2 -23.71 38.215 -0.937 1 43.5 ? C4D NAD 401 D 1 HETATM 30 O O4D NAD . . . Y 2 -22.82 39.263 -1.38 1 43.99 ? O4D NAD 401 D 1 HETATM 31 C C3D NAD . . . Y 2 -22.927 36.897 -1.043 1 43.61 ? C3D NAD 401 D 1 HETATM 32 O O3D NAD . . . Y 2 -23.42 36.127 -2.135 1 43.67 ? O3D NAD 401 D 1 HETATM 33 C C2D NAD . . . Y 2 -21.493 37.36 -1.32 1 43.81 ? C2D NAD 401 D 1 HETATM 34 O O2D NAD . . . Y 2 -20.737 36.42 -2.078 1 43.15 ? O2D NAD 401 D 1 HETATM 35 C C1D NAD . . . Y 2 -21.774 38.648 -2.076 1 44.37 ? C1D NAD 401 D 1 HETATM 36 N N1N NAD . . . Y 2 -20.608 39.623 -2.168 1 44.54 ? N1N NAD 401 D 1 HETATM 37 C C2N NAD . . . Y 2 -20.099 40.067 -1.005 1 45.07 ? C2N NAD 401 D 1 HETATM 38 C C3N NAD . . . Y 2 -19.051 40.967 -1.009 1 45.35 ? C3N NAD 401 D 1 HETATM 39 C C7N NAD . . . Y 2 -18.512 41.542 0.267 1 45.56 ? C7N NAD 401 D 1 HETATM 40 O O7N NAD . . . Y 2 -17.379 42.045 0.271 1 46 ? O7N NAD 401 D 1 HETATM 41 N N7N NAD . . . Y 2 -19.223 41.372 1.379 1 45.02 ? N7N NAD 401 D 1 HETATM 42 C C4N NAD . . . Y 2 -18.571 41.424 -2.231 1 44.83 ? C4N NAD 401 D 1 HETATM 43 C C5N NAD . . . Y 2 -19.125 40.958 -3.409 1 44.48 ? C5N NAD 401 D 1 HETATM 44 C C6N NAD . . . Y 2 -20.136 40.037 -3.36 1 44.21 ? C6N NAD 401 D 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #