data_8G9V # _model_server_result.job_id gwDKF34PZ47Ewd41n0HjCw _model_server_result.datetime_utc '2025-08-24 09:46:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":403}' # _entry.id 8G9V # _exptl.entry_id 8G9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.755 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-DODECANYL OCTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.05 _cell.angle_gamma 90 _cell.entry_id 8G9V _cell.length_a 96.15 _cell.length_b 161.56 _cell.length_c 100.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N,O,P,Q,TA,UA 1 1 C,D,R,S,T,U,V,W,X,Y,Z,AA,VA,WA 2 1 E,F,BA,CA,DA,EA,FA,GA,HA,IA,JA,XA,YA 3 1 G,H,KA,LA,MA,NA,OA,PA,QA,RA,SA,ZA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 T N N ? 4 AA N N ? 4 BA N N # _chem_comp.formula 'C28 H58 O9' _chem_comp.formula_weight 538.755 _chem_comp.id CE1 _chem_comp.mon_nstd_flag . _chem_comp.name 'O-DODECANYL OCTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THESIT # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CE1 sing 70 n n C1 H11 CE1 sing 71 n n C1 H12 CE1 sing 72 n n C1 H13 CE1 sing 73 n n C2 C3 CE1 sing 74 n n C2 H21 CE1 sing 75 n n C2 H22 CE1 sing 76 n n C3 C4 CE1 sing 77 n n C3 H31 CE1 sing 78 n n C3 H32 CE1 sing 79 n n C4 C5 CE1 sing 80 n n C4 H41 CE1 sing 81 n n C4 H42 CE1 sing 82 n n C5 C6 CE1 sing 83 n n C5 H51 CE1 sing 84 n n C5 H52 CE1 sing 85 n n C6 C7 CE1 sing 86 n n C6 H61 CE1 sing 87 n n C6 H62 CE1 sing 88 n n C7 C8 CE1 sing 89 n n C7 H71 CE1 sing 90 n n C7 H72 CE1 sing 91 n n C8 C9 CE1 sing 92 n n C8 H81 CE1 sing 93 n n C8 H82 CE1 sing 94 n n C9 C10 CE1 sing 95 n n C9 H91 CE1 sing 96 n n C9 H92 CE1 sing 97 n n C10 C11 CE1 sing 98 n n C10 H101 CE1 sing 99 n n C10 H102 CE1 sing 100 n n C11 C12 CE1 sing 101 n n C11 H111 CE1 sing 102 n n C11 H112 CE1 sing 103 n n C12 O13 CE1 sing 104 n n C12 H121 CE1 sing 105 n n C12 H122 CE1 sing 106 n n O13 C14 CE1 sing 107 n n C14 C15 CE1 sing 108 n n C14 H141 CE1 sing 109 n n C14 H142 CE1 sing 110 n n C15 O16 CE1 sing 111 n n C15 H151 CE1 sing 112 n n C15 H152 CE1 sing 113 n n O16 C17 CE1 sing 114 n n C17 C18 CE1 sing 115 n n C17 H171 CE1 sing 116 n n C17 H172 CE1 sing 117 n n C18 O19 CE1 sing 118 n n C18 H181 CE1 sing 119 n n C18 H182 CE1 sing 120 n n O19 C20 CE1 sing 121 n n C20 C21 CE1 sing 122 n n C20 H201 CE1 sing 123 n n C20 H202 CE1 sing 124 n n C21 O22 CE1 sing 125 n n C21 H211 CE1 sing 126 n n C21 H212 CE1 sing 127 n n O22 C23 CE1 sing 128 n n C23 C24 CE1 sing 129 n n C23 H231 CE1 sing 130 n n C23 H232 CE1 sing 131 n n C24 O25 CE1 sing 132 n n C24 H241 CE1 sing 133 n n C24 H242 CE1 sing 134 n n O25 C26 CE1 sing 135 n n C26 C27 CE1 sing 136 n n C26 H261 CE1 sing 137 n n C26 H262 CE1 sing 138 n n C27 O28 CE1 sing 139 n n C27 H271 CE1 sing 140 n n C27 H272 CE1 sing 141 n n O28 C29 CE1 sing 142 n n C29 C30 CE1 sing 143 n n C29 H291 CE1 sing 144 n n C29 H292 CE1 sing 145 n n C30 O31 CE1 sing 146 n n C30 H301 CE1 sing 147 n n C30 H302 CE1 sing 148 n n O31 C32 CE1 sing 149 n n C32 C33 CE1 sing 150 n n C32 H321 CE1 sing 151 n n C32 H322 CE1 sing 152 n n C33 O34 CE1 sing 153 n n C33 H331 CE1 sing 154 n n C33 H332 CE1 sing 155 n n O34 C35 CE1 sing 156 n n C35 C36 CE1 sing 157 n n C35 H351 CE1 sing 158 n n C35 H352 CE1 sing 159 n n C36 O37 CE1 sing 160 n n C36 H361 CE1 sing 161 n n C36 H362 CE1 sing 162 n n O37 H37 CE1 sing 163 n n # _atom_sites.entry_id 8G9V _atom_sites.fract_transf_matrix[1][1] 0.0104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000919 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 401 301 NAD NAD . J 3 YYC A 1 402 401 YYC PFE . K 4 CE1 A 1 403 501 CE1 C12 . L 5 SO4 A 1 404 6 SO4 SO4 . M 5 SO4 A 1 405 11 SO4 SO4 . N 2 NAD B 1 401 301 NAD NAD . O 3 YYC B 1 402 401 YYC PFE . P 5 SO4 B 1 403 4 SO4 SO4 . Q 5 SO4 B 1 404 13 SO4 SO4 . R 2 NAD C 1 401 301 NAD NAD . S 3 YYC C 1 402 401 YYC PFE . T 4 CE1 C 1 403 501 CE1 C12 . U 5 SO4 C 1 404 2 SO4 SO4 . V 5 SO4 C 1 405 5 SO4 SO4 . W 5 SO4 C 1 406 8 SO4 SO4 . X 5 SO4 C 1 407 15 SO4 SO4 . Y 2 NAD D 1 401 301 NAD NAD . Z 3 YYC D 1 402 401 YYC PFE . AA 4 CE1 D 1 403 501 CE1 C12 . BA 4 CE1 E 1 601 601 CE1 C12 . CA 2 NAD E 1 602 301 NAD NAD . DA 3 YYC E 1 603 401 YYC PFE . EA 5 SO4 E 1 604 12 SO4 SO4 . FA 2 NAD F 1 401 301 NAD NAD . GA 3 YYC F 1 402 401 YYC PFE . HA 5 SO4 F 1 403 1 SO4 SO4 . IA 5 SO4 F 1 404 3 SO4 SO4 . JA 5 SO4 F 1 405 10 SO4 SO4 . KA 2 NAD G 1 401 301 NAD NAD . LA 3 YYC G 1 402 401 YYC PFE . MA 5 SO4 G 1 403 7 SO4 SO4 . NA 5 SO4 G 1 404 14 SO4 SO4 . OA 2 NAD H 1 401 301 NAD NAD . PA 3 YYC H 1 402 401 YYC PFE . QA 5 SO4 H 1 403 9 SO4 SO4 . RA 5 SO4 H 1 404 16 SO4 SO4 . SA 5 SO4 H 1 405 17 SO4 SO4 . TA 6 HOH A 1 501 3 HOH HOH . TA 6 HOH A 2 502 8 HOH HOH . TA 6 HOH A 3 503 5 HOH HOH . TA 6 HOH A 4 504 18 HOH HOH . UA 6 HOH B 1 501 22 HOH HOH . UA 6 HOH B 2 502 21 HOH HOH . UA 6 HOH B 3 503 24 HOH HOH . UA 6 HOH B 4 504 7 HOH HOH . UA 6 HOH B 5 505 15 HOH HOH . VA 6 HOH C 1 501 10 HOH HOH . VA 6 HOH C 2 502 17 HOH HOH . VA 6 HOH C 3 503 13 HOH HOH . WA 6 HOH D 1 501 1 HOH HOH . WA 6 HOH D 2 502 23 HOH HOH . WA 6 HOH D 3 503 12 HOH HOH . WA 6 HOH D 4 504 19 HOH HOH . XA 6 HOH E 1 701 2 HOH HOH . XA 6 HOH E 2 702 14 HOH HOH . YA 6 HOH F 1 501 4 HOH HOH . YA 6 HOH F 2 502 16 HOH HOH . YA 6 HOH F 3 503 11 HOH HOH . YA 6 HOH F 4 504 9 HOH HOH . ZA 6 HOH H 1 501 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CE1 . . . AA 4 0.527 53.024 -18.249 1 52.73 ? C7 CE1 403 D 1 HETATM 2 C C8 CE1 . . . AA 4 -0.569 52.863 -17.185 1 53.24 ? C8 CE1 403 D 1 HETATM 3 C C9 CE1 . . . AA 4 -1.501 51.64 -17.387 1 53.8 ? C9 CE1 403 D 1 HETATM 4 C C10 CE1 . . . AA 4 -2.62 51.516 -16.355 1 54 ? C10 CE1 403 D 1 HETATM 5 C C11 CE1 . . . AA 4 -3.229 50.122 -16.207 1 54 ? C11 CE1 403 D 1 HETATM 6 C C12 CE1 . . . AA 4 -4.231 50.052 -15.071 1 54.3 ? C12 CE1 403 D 1 HETATM 7 O O13 CE1 . . . AA 4 -5.05 48.881 -15.167 1 54.61 ? O13 CE1 403 D 1 HETATM 8 C C14 CE1 . . . AA 4 -5.36 48.273 -13.903 1 54.42 ? C14 CE1 403 D 1 HETATM 9 C C15 CE1 . . . AA 4 -6.156 47.016 -14.112 1 54.07 ? C15 CE1 403 D 1 HETATM 10 O O16 CE1 . . . AA 4 -6.337 46.315 -12.885 1 53.48 ? O16 CE1 403 D 1 HETATM 11 C C17 CE1 . . . AA 4 -7.245 45.226 -12.982 1 53.27 ? C17 CE1 403 D 1 HETATM 12 C C18 CE1 . . . AA 4 -6.664 44.04 -12.288 1 53.26 ? C18 CE1 403 D 1 HETATM 13 O O19 CE1 . . . AA 4 -7.691 43.195 -11.774 1 53.19 ? O19 CE1 403 D 1 HETATM 14 C C20 CE1 . . . AA 4 -7.161 42.038 -11.122 1 52.9 ? C20 CE1 403 D 1 HETATM 15 C C21 CE1 . . . AA 4 -7.786 41.807 -9.771 1 52.58 ? C21 CE1 403 D 1 HETATM 16 O O22 CE1 . . . AA 4 -6.855 42.07 -8.71 1 52.05 ? O22 CE1 403 D 1 HETATM 17 C C23 CE1 . . . AA 4 -7.285 43.02 -7.749 1 51.97 ? C23 CE1 403 D 1 HETATM 18 C C24 CE1 . . . AA 4 -6.833 42.627 -6.398 1 52.33 ? C24 CE1 403 D 1 HETATM 19 O O25 CE1 . . . AA 4 -7.079 43.679 -5.476 1 52.93 ? O25 CE1 403 D 1 HETATM 20 C C26 CE1 . . . AA 4 -5.89 44.273 -4.963 1 53.58 ? C26 CE1 403 D 1 HETATM 21 C C27 CE1 . . . AA 4 -6.128 44.897 -3.631 1 54.28 ? C27 CE1 403 D 1 HETATM 22 O O28 CE1 . . . AA 4 -6.24 43.895 -2.63 1 55.09 ? O28 CE1 403 D 1 HETATM 23 C C29 CE1 . . . AA 4 -6.711 44.404 -1.39 1 55.63 ? C29 CE1 403 D 1 HETATM 24 C C30 CE1 . . . AA 4 -8.199 44.258 -1.301 1 56.38 ? C30 CE1 403 D 1 HETATM 25 O O31 CE1 . . . AA 4 -8.642 44.596 0.016 1 57.01 ? O31 CE1 403 D 1 HETATM 26 C C32 CE1 . . . AA 4 -10.055 44.591 0.192 1 57.41 ? C32 CE1 403 D 1 HETATM 27 C C33 CE1 . . . AA 4 -10.559 43.2 0.438 1 58.01 ? C33 CE1 403 D 1 HETATM 28 O O34 CE1 . . . AA 4 -9.988 42.614 1.61 1 58.35 ? O34 CE1 403 D 1 HETATM 29 C C35 CE1 . . . AA 4 -10.549 41.333 1.952 1 59.02 ? C35 CE1 403 D 1 HETATM 30 C C36 CE1 . . . AA 4 -10.063 40.265 0.991 1 59.43 ? C36 CE1 403 D 1 HETATM 31 O O37 CE1 . . . AA 4 -9.762 39.006 1.631 1 59.36 ? O37 CE1 403 D 1 HETATM 32 H H71 CE1 . . . AA 4 1.327 53.652 -17.862 0 59.48 ? H71 CE1 403 D 1 HETATM 33 H H72 CE1 . . . AA 4 0.135 53.584 -19.097 0 59.55 ? H72 CE1 403 D 1 HETATM 34 H H81 CE1 . . . AA 4 -0.094 52.799 -16.207 0 58.86 ? H81 CE1 403 D 1 HETATM 35 H H82 CE1 . . . AA 4 -1.166 53.772 -17.134 0 59.45 ? H82 CE1 403 D 1 HETATM 36 H H91 CE1 . . . AA 4 -1.932 51.668 -18.387 0 58.89 ? H91 CE1 403 D 1 HETATM 37 H H92 CE1 . . . AA 4 -0.911 50.725 -17.375 0 58.28 ? H92 CE1 403 D 1 HETATM 38 H H101 CE1 . . . AA 4 -2.244 51.845 -15.387 0 58.53 ? H101 CE1 403 D 1 HETATM 39 H H102 CE1 . . . AA 4 -3.406 52.23 -16.594 0 58.81 ? H102 CE1 403 D 1 HETATM 40 H H111 CE1 . . . AA 4 -3.703 49.823 -17.141 0 57.54 ? H111 CE1 403 D 1 HETATM 41 H H112 CE1 . . . AA 4 -2.443 49.382 -16.055 0 57.27 ? H112 CE1 403 D 1 HETATM 42 H H121 CE1 . . . AA 4 -3.707 50.078 -14.116 0 57.46 ? H121 CE1 403 D 1 HETATM 43 H H122 CE1 . . . AA 4 -4.869 50.935 -15.073 0 57.9 ? H122 CE1 403 D 1 HETATM 44 H H141 CE1 . . . AA 4 -4.448 48.041 -13.353 0 56.38 ? H141 CE1 403 D 1 HETATM 45 H H142 CE1 . . . AA 4 -5.926 48.959 -13.276 0 56.64 ? H142 CE1 403 D 1 HETATM 46 H H151 CE1 . . . AA 4 -7.118 47.285 -14.543 0 55.57 ? H151 CE1 403 D 1 HETATM 47 H H152 CE1 . . . AA 4 -5.671 46.374 -14.848 0 55.39 ? H152 CE1 403 D 1 HETATM 48 H H171 CE1 . . . AA 4 -8.206 45.488 -12.54 0 53.72 ? H171 CE1 403 D 1 HETATM 49 H H172 CE1 . . . AA 4 -7.435 44.979 -14.026 0 53.75 ? H172 CE1 403 D 1 HETATM 50 H H181 CE1 . . . AA 4 -6.036 43.49 -12.987 0 53.25 ? H181 CE1 403 D 1 HETATM 51 H H182 CE1 . . . AA 4 -6.001 44.372 -11.489 0 53.43 ? H182 CE1 403 D 1 HETATM 52 H H201 CE1 . . . AA 4 -7.316 41.164 -11.753 0 52.04 ? H201 CE1 403 D 1 HETATM 53 H H202 CE1 . . . AA 4 -6.083 42.121 -10.997 0 52.36 ? H202 CE1 403 D 1 HETATM 54 H H211 CE1 . . . AA 4 -8.696 42.394 -9.698 0 51.86 ? H211 CE1 403 D 1 HETATM 55 H H212 CE1 . . . AA 4 -8.119 40.769 -9.707 0 51.5 ? H212 CE1 403 D 1 HETATM 56 H H231 CE1 . . . AA 4 -6.877 43.999 -7.992 0 51.95 ? H231 CE1 403 D 1 HETATM 57 H H232 CE1 . . . AA 4 -8.369 43.127 -7.731 0 51.56 ? H232 CE1 403 D 1 HETATM 58 H H241 CE1 . . . AA 4 -7.374 41.74 -6.095 0 51.79 ? H241 CE1 403 D 1 HETATM 59 H H242 CE1 . . . AA 4 -5.785 42.337 -6.429 0 52.09 ? H242 CE1 403 D 1 HETATM 60 H H261 CE1 . . . AA 4 -5.088 43.544 -4.866 0 54.04 ? H261 CE1 403 D 1 HETATM 61 H H262 CE1 . . . AA 4 -5.518 45.034 -5.648 0 54.36 ? H262 CE1 403 D 1 HETATM 62 H H271 CE1 . . . AA 4 -5.312 45.582 -3.406 0 55.69 ? H271 CE1 403 D 1 HETATM 63 H H272 CE1 . . . AA 4 -7.035 45.5 -3.653 0 55.39 ? H272 CE1 403 D 1 HETATM 64 H H291 CE1 . . . AA 4 -6.233 43.889 -0.558 0 57.05 ? H291 CE1 403 D 1 HETATM 65 H H292 CE1 . . . AA 4 -6.448 45.456 -1.284 0 57.38 ? H292 CE1 403 D 1 HETATM 66 H H301 CE1 . . . AA 4 -8.659 44.916 -2.036 0 57.48 ? H301 CE1 403 D 1 HETATM 67 H H302 CE1 . . . AA 4 -8.484 43.245 -1.577 0 57.03 ? H302 CE1 403 D 1 HETATM 68 H H321 CE1 . . . AA 4 -10.331 45.243 1.018 0 59.33 ? H321 CE1 403 D 1 HETATM 69 H H322 CE1 . . . AA 4 -10.549 45 -0.687 0 58.67 ? H322 CE1 403 D 1 HETATM 70 H H331 CE1 . . . AA 4 -11.643 43.243 0.534 0 58.96 ? H331 CE1 403 D 1 HETATM 71 H H332 CE1 . . . AA 4 -10.37 42.579 -0.433 0 58.59 ? H332 CE1 403 D 1 HETATM 72 H H351 CE1 . . . AA 4 -10.279 41.066 2.973 0 60.44 ? H351 CE1 403 D 1 HETATM 73 H H352 CE1 . . . AA 4 -11.637 41.376 1.94 0 59.96 ? H352 CE1 403 D 1 HETATM 74 H H361 CE1 . . . AA 4 -10.845 40.009 0.28 0 59.58 ? H361 CE1 403 D 1 HETATM 75 H H362 CE1 . . . AA 4 -9.22 40.625 0.4 0 59.91 ? H362 CE1 403 D 1 HETATM 76 H H37 CE1 . . . AA 4 -8.793 39.014 1.85 0 60.11 ? H37 CE1 403 D 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 507 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 76 #