data_8G9V # _model_server_result.job_id C2Ns09Q5Y06eFqCW6tvnSw _model_server_result.datetime_utc '2024-12-21 12:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":403}' # _entry.id 8G9V # _exptl.entry_id 8G9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.755 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-DODECANYL OCTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.05 _cell.angle_gamma 90 _cell.entry_id 8G9V _cell.length_a 96.15 _cell.length_b 161.56 _cell.length_c 100.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N,O,P,Q,TA,UA 1 1 C,D,R,S,T,U,V,W,X,Y,Z,AA,VA,WA 2 1 E,F,BA,CA,DA,EA,FA,GA,HA,IA,JA,XA,YA 3 1 G,H,KA,LA,MA,NA,OA,PA,QA,RA,SA,ZA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 T N N ? 4 AA N N ? 4 BA N N # _chem_comp.formula 'C28 H58 O9' _chem_comp.formula_weight 538.755 _chem_comp.id CE1 _chem_comp.mon_nstd_flag . _chem_comp.name 'O-DODECANYL OCTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THESIT # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CE1 sing 70 n n C1 H11 CE1 sing 71 n n C1 H12 CE1 sing 72 n n C1 H13 CE1 sing 73 n n C2 C3 CE1 sing 74 n n C2 H21 CE1 sing 75 n n C2 H22 CE1 sing 76 n n C3 C4 CE1 sing 77 n n C3 H31 CE1 sing 78 n n C3 H32 CE1 sing 79 n n C4 C5 CE1 sing 80 n n C4 H41 CE1 sing 81 n n C4 H42 CE1 sing 82 n n C5 C6 CE1 sing 83 n n C5 H51 CE1 sing 84 n n C5 H52 CE1 sing 85 n n C6 C7 CE1 sing 86 n n C6 H61 CE1 sing 87 n n C6 H62 CE1 sing 88 n n C7 C8 CE1 sing 89 n n C7 H71 CE1 sing 90 n n C7 H72 CE1 sing 91 n n C8 C9 CE1 sing 92 n n C8 H81 CE1 sing 93 n n C8 H82 CE1 sing 94 n n C9 C10 CE1 sing 95 n n C9 H91 CE1 sing 96 n n C9 H92 CE1 sing 97 n n C10 C11 CE1 sing 98 n n C10 H101 CE1 sing 99 n n C10 H102 CE1 sing 100 n n C11 C12 CE1 sing 101 n n C11 H111 CE1 sing 102 n n C11 H112 CE1 sing 103 n n C12 O13 CE1 sing 104 n n C12 H121 CE1 sing 105 n n C12 H122 CE1 sing 106 n n O13 C14 CE1 sing 107 n n C14 C15 CE1 sing 108 n n C14 H141 CE1 sing 109 n n C14 H142 CE1 sing 110 n n C15 O16 CE1 sing 111 n n C15 H151 CE1 sing 112 n n C15 H152 CE1 sing 113 n n O16 C17 CE1 sing 114 n n C17 C18 CE1 sing 115 n n C17 H171 CE1 sing 116 n n C17 H172 CE1 sing 117 n n C18 O19 CE1 sing 118 n n C18 H181 CE1 sing 119 n n C18 H182 CE1 sing 120 n n O19 C20 CE1 sing 121 n n C20 C21 CE1 sing 122 n n C20 H201 CE1 sing 123 n n C20 H202 CE1 sing 124 n n C21 O22 CE1 sing 125 n n C21 H211 CE1 sing 126 n n C21 H212 CE1 sing 127 n n O22 C23 CE1 sing 128 n n C23 C24 CE1 sing 129 n n C23 H231 CE1 sing 130 n n C23 H232 CE1 sing 131 n n C24 O25 CE1 sing 132 n n C24 H241 CE1 sing 133 n n C24 H242 CE1 sing 134 n n O25 C26 CE1 sing 135 n n C26 C27 CE1 sing 136 n n C26 H261 CE1 sing 137 n n C26 H262 CE1 sing 138 n n C27 O28 CE1 sing 139 n n C27 H271 CE1 sing 140 n n C27 H272 CE1 sing 141 n n O28 C29 CE1 sing 142 n n C29 C30 CE1 sing 143 n n C29 H291 CE1 sing 144 n n C29 H292 CE1 sing 145 n n C30 O31 CE1 sing 146 n n C30 H301 CE1 sing 147 n n C30 H302 CE1 sing 148 n n O31 C32 CE1 sing 149 n n C32 C33 CE1 sing 150 n n C32 H321 CE1 sing 151 n n C32 H322 CE1 sing 152 n n C33 O34 CE1 sing 153 n n C33 H331 CE1 sing 154 n n C33 H332 CE1 sing 155 n n O34 C35 CE1 sing 156 n n C35 C36 CE1 sing 157 n n C35 H351 CE1 sing 158 n n C35 H352 CE1 sing 159 n n C36 O37 CE1 sing 160 n n C36 H361 CE1 sing 161 n n C36 H362 CE1 sing 162 n n O37 H37 CE1 sing 163 n n # _atom_sites.entry_id 8G9V _atom_sites.fract_transf_matrix[1][1] 0.0104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000919 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 401 301 NAD NAD . J 3 YYC A 1 402 401 YYC PFE . K 4 CE1 A 1 403 501 CE1 C12 . L 5 SO4 A 1 404 6 SO4 SO4 . M 5 SO4 A 1 405 11 SO4 SO4 . N 2 NAD B 1 401 301 NAD NAD . O 3 YYC B 1 402 401 YYC PFE . P 5 SO4 B 1 403 4 SO4 SO4 . Q 5 SO4 B 1 404 13 SO4 SO4 . R 2 NAD C 1 401 301 NAD NAD . S 3 YYC C 1 402 401 YYC PFE . T 4 CE1 C 1 403 501 CE1 C12 . U 5 SO4 C 1 404 2 SO4 SO4 . V 5 SO4 C 1 405 5 SO4 SO4 . W 5 SO4 C 1 406 8 SO4 SO4 . X 5 SO4 C 1 407 15 SO4 SO4 . Y 2 NAD D 1 401 301 NAD NAD . Z 3 YYC D 1 402 401 YYC PFE . AA 4 CE1 D 1 403 501 CE1 C12 . BA 4 CE1 E 1 601 601 CE1 C12 . CA 2 NAD E 1 602 301 NAD NAD . DA 3 YYC E 1 603 401 YYC PFE . EA 5 SO4 E 1 604 12 SO4 SO4 . FA 2 NAD F 1 401 301 NAD NAD . GA 3 YYC F 1 402 401 YYC PFE . HA 5 SO4 F 1 403 1 SO4 SO4 . IA 5 SO4 F 1 404 3 SO4 SO4 . JA 5 SO4 F 1 405 10 SO4 SO4 . KA 2 NAD G 1 401 301 NAD NAD . LA 3 YYC G 1 402 401 YYC PFE . MA 5 SO4 G 1 403 7 SO4 SO4 . NA 5 SO4 G 1 404 14 SO4 SO4 . OA 2 NAD H 1 401 301 NAD NAD . PA 3 YYC H 1 402 401 YYC PFE . QA 5 SO4 H 1 403 9 SO4 SO4 . RA 5 SO4 H 1 404 16 SO4 SO4 . SA 5 SO4 H 1 405 17 SO4 SO4 . TA 6 HOH A 1 501 3 HOH HOH . TA 6 HOH A 2 502 8 HOH HOH . TA 6 HOH A 3 503 5 HOH HOH . TA 6 HOH A 4 504 18 HOH HOH . UA 6 HOH B 1 501 22 HOH HOH . UA 6 HOH B 2 502 21 HOH HOH . UA 6 HOH B 3 503 24 HOH HOH . UA 6 HOH B 4 504 7 HOH HOH . UA 6 HOH B 5 505 15 HOH HOH . VA 6 HOH C 1 501 10 HOH HOH . VA 6 HOH C 2 502 17 HOH HOH . VA 6 HOH C 3 503 13 HOH HOH . WA 6 HOH D 1 501 1 HOH HOH . WA 6 HOH D 2 502 23 HOH HOH . WA 6 HOH D 3 503 12 HOH HOH . WA 6 HOH D 4 504 19 HOH HOH . XA 6 HOH E 1 701 2 HOH HOH . XA 6 HOH E 2 702 14 HOH HOH . YA 6 HOH F 1 501 4 HOH HOH . YA 6 HOH F 2 502 16 HOH HOH . YA 6 HOH F 3 503 11 HOH HOH . YA 6 HOH F 4 504 9 HOH HOH . ZA 6 HOH H 1 501 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CE1 . . . T 4 1.219 38.241 -26.501 1 48.22 ? C1 CE1 403 C 1 HETATM 2 C C2 CE1 . . . T 4 1.956 39.567 -26.576 1 48.4 ? C2 CE1 403 C 1 HETATM 3 C C3 CE1 . . . T 4 1.094 40.849 -26.649 1 48 ? C3 CE1 403 C 1 HETATM 4 C C4 CE1 . . . T 4 1.803 41.991 -27.392 1 47.58 ? C4 CE1 403 C 1 HETATM 5 C C5 CE1 . . . T 4 1.269 43.407 -27.161 1 47.38 ? C5 CE1 403 C 1 HETATM 6 C C6 CE1 . . . T 4 1.814 44.106 -25.905 1 47.28 ? C6 CE1 403 C 1 HETATM 7 C C7 CE1 . . . T 4 1.3 45.53 -25.664 1 47.17 ? C7 CE1 403 C 1 HETATM 8 C C8 CE1 . . . T 4 1.791 46.191 -24.374 1 47.35 ? C8 CE1 403 C 1 HETATM 9 C C9 CE1 . . . T 4 1.13 47.556 -24.08 1 47.98 ? C9 CE1 403 C 1 HETATM 10 C C10 CE1 . . . T 4 1.401 48.125 -22.675 1 48.22 ? C10 CE1 403 C 1 HETATM 11 C C11 CE1 . . . T 4 1.327 49.652 -22.554 1 48.07 ? C11 CE1 403 C 1 HETATM 12 C C12 CE1 . . . T 4 1.84 50.193 -21.222 1 47.87 ? C12 CE1 403 C 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #