data_8GAE # _model_server_result.job_id g5sbAtteUpbOo3HcDfkVFg _model_server_result.datetime_utc '2024-11-12 20:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 8GAE # _exptl.entry_id 8GAE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 54.938 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GAE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C VAL 12 C VAL 12 1_555 C N SEP 13 C SEP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C SEP 13 C SEP 13 1_555 C N ASP 14 C ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASN 49 A ASN 46 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc2 A O ASN 104 A ASN 101 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc3 A O THR 107 A THR 104 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc4 A O LYS 110 A LYS 107 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc5 A O GLY 133 A GLY 130 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc6 A OH TYR 137 A TYR 134 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc7 G MG MG . A MG 802 1_555 H O2B ADP . A ADP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc8 G MG MG . A MG 802 1_555 H O2A ADP . A ADP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc9 B OD1 ASN 49 B ASN 46 1_555 J MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc10 B O ASN 104 B ASN 101 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc11 B O THR 107 B THR 104 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc12 B O LYS 110 B LYS 107 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc13 B O GLY 133 B GLY 130 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc14 B OH TYR 137 B TYR 134 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.448 ? metalc ? metalc15 J MG MG . B MG 802 1_555 K O3G ATP . B ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc16 J MG MG . B MG 802 1_555 K O1B ATP . B ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc17 J MG MG . B MG 802 1_555 K O2A ATP . B ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc18 E OD1 ASP 246 E ASP 242 1_555 L MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc19 E NE2 HIS 248 E HIS 244 1_555 L MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc20 E OD2 ASP 275 E ASP 271 1_555 L MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc21 E OD1 ASP 275 E ASP 271 1_555 M MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc22 E OD2 ASP 275 E ASP 271 1_555 M MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc23 E OD1 ASN 307 E ASN 303 1_555 M MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GAE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 K A 1 801 997 K K . G 6 MG A 1 802 998 MG MG . H 7 ADP A 1 803 999 ADP ADP . I 5 K B 1 801 997 K K . J 6 MG B 1 802 998 MG MG . K 8 ATP B 1 803 999 ATP ATP . L 9 MN E 1 501 998 MN MN . M 9 MN E 1 502 999 MN MN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 9 _atom_site.Cartn_x 183.186 _atom_site.Cartn_y 136.348 _atom_site.Cartn_z 143.824 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 297.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #