data_8GAE # _model_server_result.job_id JnGjKSRE8_Ncgmo40Kg4sg _model_server_result.datetime_utc '2025-03-09 01:48:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":803}' # _entry.id 8GAE # _exptl.entry_id 8GAE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GAE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C VAL 12 C VAL 12 1_555 C N SEP 13 C SEP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C SEP 13 C SEP 13 1_555 C N ASP 14 C ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASN 49 A ASN 46 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc2 A O ASN 104 A ASN 101 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc3 A O THR 107 A THR 104 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc4 A O LYS 110 A LYS 107 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc5 A O GLY 133 A GLY 130 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc6 A OH TYR 137 A TYR 134 1_555 F K K . A K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc7 G MG MG . A MG 802 1_555 H O2B ADP . A ADP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc8 G MG MG . A MG 802 1_555 H O2A ADP . A ADP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc9 B OD1 ASN 49 B ASN 46 1_555 J MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc10 B O ASN 104 B ASN 101 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc11 B O THR 107 B THR 104 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc12 B O LYS 110 B LYS 107 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc13 B O GLY 133 B GLY 130 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc14 B OH TYR 137 B TYR 134 1_555 I K K . B K 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.448 ? metalc ? metalc15 J MG MG . B MG 802 1_555 K O3G ATP . B ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc16 J MG MG . B MG 802 1_555 K O1B ATP . B ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc17 J MG MG . B MG 802 1_555 K O2A ATP . B ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc18 E OD1 ASP 246 E ASP 242 1_555 L MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc19 E NE2 HIS 248 E HIS 244 1_555 L MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc20 E OD2 ASP 275 E ASP 271 1_555 L MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc21 E OD1 ASP 275 E ASP 271 1_555 M MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc22 E OD2 ASP 275 E ASP 271 1_555 M MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc23 E OD1 ASN 307 E ASN 303 1_555 M MN MN . E MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 8GAE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 K A 1 801 997 K K . G 6 MG A 1 802 998 MG MG . H 7 ADP A 1 803 999 ADP ADP . I 5 K B 1 801 997 K K . J 6 MG B 1 802 998 MG MG . K 8 ATP B 1 803 999 ATP ATP . L 9 MN E 1 501 998 MN MN . M 9 MN E 1 502 999 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 8 108.755 137.102 110.376 1 122.06 ? PG ATP 803 B 1 HETATM 2 O O1G ATP . . . K 8 109.342 137.599 111.643 1 122.06 ? O1G ATP 803 B 1 HETATM 3 O O2G ATP . . . K 8 109.881 136.835 109.459 1 122.06 ? O2G ATP 803 B 1 HETATM 4 O O3G ATP . . . K 8 107.995 135.845 110.657 1 122.06 ? O3G ATP 803 B 1 HETATM 5 P PB ATP . . . K 8 106.498 137.857 108.954 1 122.06 ? PB ATP 803 B 1 HETATM 6 O O1B ATP . . . K 8 105.678 136.819 109.629 1 122.06 ? O1B ATP 803 B 1 HETATM 7 O O2B ATP . . . K 8 105.669 139.065 108.718 1 122.06 ? O2B ATP 803 B 1 HETATM 8 O O3B ATP . . . K 8 107.8 138.21 109.775 1 122.06 ? O3B ATP 803 B 1 HETATM 9 P PA ATP . . . K 8 106.884 136.009 107.025 1 122.06 ? PA ATP 803 B 1 HETATM 10 O O1A ATP . . . K 8 107.78 135.735 105.885 1 122.06 ? O1A ATP 803 B 1 HETATM 11 O O2A ATP . . . K 8 106.922 134.896 108.019 1 122.06 ? O2A ATP 803 B 1 HETATM 12 O O3A ATP . . . K 8 107.155 137.41 107.624 1 122.06 ? O3A ATP 803 B 1 HETATM 13 O O5' ATP . . . K 8 105.433 136.271 106.471 1 122.06 ? O5' ATP 803 B 1 HETATM 14 C C5' ATP . . . K 8 105.288 137.136 105.36 1 122.06 ? C5' ATP 803 B 1 HETATM 15 C C4' ATP . . . K 8 103.819 137.525 105.232 1 122.06 ? C4' ATP 803 B 1 HETATM 16 O O4' ATP . . . K 8 103.096 136.456 104.636 1 122.06 ? O4' ATP 803 B 1 HETATM 17 C C3' ATP . . . K 8 103.109 137.753 106.56 1 122.06 ? C3' ATP 803 B 1 HETATM 18 O O3' ATP . . . K 8 103.443 139.009 107.155 1 122.06 ? O3' ATP 803 B 1 HETATM 19 C C2' ATP . . . K 8 101.66 137.613 106.139 1 122.06 ? C2' ATP 803 B 1 HETATM 20 O O2' ATP . . . K 8 101.233 138.804 105.477 1 122.06 ? O2' ATP 803 B 1 HETATM 21 C C1' ATP . . . K 8 101.744 136.455 105.116 1 122.06 ? C1' ATP 803 B 1 HETATM 22 N N9 ATP . . . K 8 101.477 135.139 105.664 1 122.06 ? N9 ATP 803 B 1 HETATM 23 C C8 ATP . . . K 8 102.322 134.031 105.673 1 122.06 ? C8 ATP 803 B 1 HETATM 24 N N7 ATP . . . K 8 101.682 132.891 105.978 1 122.06 ? N7 ATP 803 B 1 HETATM 25 C C5 ATP . . . K 8 100.405 133.33 106.148 1 122.06 ? C5 ATP 803 B 1 HETATM 26 C C6 ATP . . . K 8 99.271 132.601 106.451 1 122.06 ? C6 ATP 803 B 1 HETATM 27 N N6 ATP . . . K 8 99.294 131.28 106.636 1 122.06 ? N6 ATP 803 B 1 HETATM 28 N N1 ATP . . . K 8 98.078 133.149 106.525 1 122.06 ? N1 ATP 803 B 1 HETATM 29 C C2 ATP . . . K 8 98.037 134.468 106.321 1 122.06 ? C2 ATP 803 B 1 HETATM 30 N N3 ATP . . . K 8 99.075 135.267 106.051 1 122.06 ? N3 ATP 803 B 1 HETATM 31 C C4 ATP . . . K 8 100.255 134.655 105.96 1 122.06 ? C4 ATP 803 B 1 HETATM 32 H "H5'1" ATP . . . K 8 105.627 136.633 104.446 1 122.06 ? "H5'1" ATP 803 B 1 HETATM 33 H "H5'2" ATP . . . K 8 105.878 138.048 105.512 1 122.06 ? "H5'2" ATP 803 B 1 HETATM 34 H H4' ATP . . . K 8 103.722 138.426 104.614 1 122.06 ? H4' ATP 803 B 1 HETATM 35 H H3' ATP . . . K 8 103.326 136.941 107.266 1 122.06 ? H3' ATP 803 B 1 HETATM 36 H HO3' ATP . . . K 8 104.203 138.856 107.744 1 122.06 ? HO3' ATP 803 B 1 HETATM 37 H H2' ATP . . . K 8 101.023 137.356 106.994 1 122.06 ? H2' ATP 803 B 1 HETATM 38 H HO2' ATP . . . K 8 100.322 138.669 105.16 1 122.06 ? HO2' ATP 803 B 1 HETATM 39 H H1' ATP . . . K 8 101.039 136.61 104.291 1 122.06 ? H1' ATP 803 B 1 HETATM 40 H H8 ATP . . . K 8 103.374 134.117 105.429 1 122.06 ? H8 ATP 803 B 1 HETATM 41 H HN61 ATP . . . K 8 100.155 130.854 106.315 1 122.06 ? HN61 ATP 803 B 1 HETATM 42 H HN62 ATP . . . K 8 98.447 130.795 106.374 1 122.06 ? HN62 ATP 803 B 1 HETATM 43 H H2 ATP . . . K 8 97.059 134.94 106.379 1 122.06 ? H2 ATP 803 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #