data_8GB2 # _model_server_result.job_id MkfHoxXGkc1MqXKQlTAF3A _model_server_result.datetime_utc '2025-07-01 19:00:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 8GB2 # _exptl.entry_id 8GB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.52 _cell.angle_gamma 90 _cell.entry_id 8GB2 _cell.length_a 202.574 _cell.length_b 81.884 _cell.length_c 154.026 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 231 D CYS 341 1_555 A SG CYS 240 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf2 B SG CYS 231 A CYS 341 1_555 B SG CYS 240 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 C SG CYS 231 B CYS 341 1_555 C SG CYS 240 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 D SG CYS 231 C CYS 341 1_555 D SG CYS 240 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A NE2 HIS 57 D HIS 167 1_555 E FE FE . D FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 A OD2 ASP 97 D ASP 207 1_555 E FE FE . D FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc3 A OD1 ASP 201 D ASP 311 1_555 E FE FE . D FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc4 A OD2 ASP 201 D ASP 311 1_555 E FE FE . D FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc5 B NE2 HIS 57 A HIS 167 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc6 B NE2 HIS 96 A HIS 206 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc7 B OD2 ASP 97 A ASP 207 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc8 B OD1 ASP 201 A ASP 311 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc9 B OD2 ASP 201 A ASP 311 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc10 C NE2 HIS 57 B HIS 167 1_555 G FE FE . B FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc11 C NE2 HIS 96 B HIS 206 1_555 G FE FE . B FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc12 C OD2 ASP 97 B ASP 207 1_555 G FE FE . B FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc13 C OD1 ASP 201 B ASP 311 1_555 G FE FE . B FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? metalc ? metalc14 D ND1 HIS 96 C HIS 206 1_555 H FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc15 D OD2 ASP 97 C ASP 207 1_555 H FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc16 D OD1 ASP 201 C ASP 311 1_555 H FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc17 D OD2 ASP 201 C ASP 311 1_555 H FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GB2 _atom_sites.fract_transf_matrix[1][1] 0.004936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002683 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FE D 1 701 1 FE FE . F 2 FE A 1 701 2 FE FE . G 2 FE B 1 701 4 FE FE . H 2 FE C 1 701 3 FE FE . I 3 HOH A 1 801 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.071 _atom_site.Cartn_y -3.446 _atom_site.Cartn_z 46.575 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 201.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 701 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #