data_8GB8
#
_model_server_result.job_id            iEX9VXrpSFQv2I2snee8pw 
_model_server_result.datetime_utc      '2024-11-16 15:42:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gb8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":305}' 
#
_entry.id    8GB8 
#
_exptl.entry_id    8GB8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GB8 
_cell.length_a            44.544 
_cell.length_b            132.184 
_cell.length_c            170.47 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 E CYS 336 1_555 A SG CYS 43 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 61 E CYS 379 1_555 A SG CYS 114 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 73 E CYS 391 1_555 A SG CYS 207 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 162 E CYS 480 1_555 A SG CYS 170 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 B SG CYS 148 H CYS 148 1_555 B SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 25 E ASN 343 1_555 D C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8GB8 
_atom_sites.fract_transf_matrix[1][1]    0.02245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007565 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005866 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG E 1 601 528 NAG NAG . 
E 5 EDO E 1 602 529 EDO EDO . 
F 6 GOL L 1 301 301 GOL GOL . 
G 7 GLY L 1 302 212 GLY GLY . 
H 8 PEG L 1 303 301 PEG PEG . 
I 5 EDO L 1 304 302 EDO EDO . 
J 5 EDO L 1 305 303 EDO EDO . 
K 9 HOH E 1 701 132 HOH HOH . 
K 9 HOH E 2 702 75 HOH HOH . 
K 9 HOH E 3 703 86 HOH HOH . 
K 9 HOH E 4 704 143 HOH HOH . 
K 9 HOH E 5 705 156 HOH HOH . 
K 9 HOH E 6 706 161 HOH HOH . 
K 9 HOH E 7 707 71 HOH HOH . 
K 9 HOH E 8 708 133 HOH HOH . 
K 9 HOH E 9 709 46 HOH HOH . 
K 9 HOH E 10 710 8 HOH HOH . 
K 9 HOH E 11 711 80 HOH HOH . 
K 9 HOH E 12 712 93 HOH HOH . 
K 9 HOH E 13 713 160 HOH HOH . 
K 9 HOH E 14 714 109 HOH HOH . 
K 9 HOH E 15 715 92 HOH HOH . 
K 9 HOH E 16 716 52 HOH HOH . 
K 9 HOH E 17 717 124 HOH HOH . 
K 9 HOH E 18 718 72 HOH HOH . 
K 9 HOH E 19 719 142 HOH HOH . 
K 9 HOH E 20 720 159 HOH HOH . 
K 9 HOH E 21 721 101 HOH HOH . 
K 9 HOH E 22 722 91 HOH HOH . 
K 9 HOH E 23 723 119 HOH HOH . 
K 9 HOH E 24 724 148 HOH HOH . 
K 9 HOH E 25 725 103 HOH HOH . 
K 9 HOH E 26 726 163 HOH HOH . 
K 9 HOH E 27 727 129 HOH HOH . 
L 9 HOH H 1 301 147 HOH HOH . 
L 9 HOH H 2 302 30 HOH HOH . 
L 9 HOH H 3 303 113 HOH HOH . 
L 9 HOH H 4 304 144 HOH HOH . 
L 9 HOH H 5 305 116 HOH HOH . 
L 9 HOH H 6 306 14 HOH HOH . 
L 9 HOH H 7 307 85 HOH HOH . 
L 9 HOH H 8 308 53 HOH HOH . 
L 9 HOH H 9 309 78 HOH HOH . 
L 9 HOH H 10 310 123 HOH HOH . 
L 9 HOH H 11 311 65 HOH HOH . 
L 9 HOH H 12 312 25 HOH HOH . 
L 9 HOH H 13 313 59 HOH HOH . 
L 9 HOH H 14 314 95 HOH HOH . 
L 9 HOH H 15 315 11 HOH HOH . 
L 9 HOH H 16 316 24 HOH HOH . 
L 9 HOH H 17 317 26 HOH HOH . 
L 9 HOH H 18 318 21 HOH HOH . 
L 9 HOH H 19 319 37 HOH HOH . 
L 9 HOH H 20 320 50 HOH HOH . 
L 9 HOH H 21 321 54 HOH HOH . 
L 9 HOH H 22 322 67 HOH HOH . 
L 9 HOH H 23 323 111 HOH HOH . 
L 9 HOH H 24 324 36 HOH HOH . 
L 9 HOH H 25 325 150 HOH HOH . 
L 9 HOH H 26 326 98 HOH HOH . 
L 9 HOH H 27 327 22 HOH HOH . 
L 9 HOH H 28 328 9 HOH HOH . 
L 9 HOH H 29 329 137 HOH HOH . 
L 9 HOH H 30 330 34 HOH HOH . 
L 9 HOH H 31 331 16 HOH HOH . 
L 9 HOH H 32 332 38 HOH HOH . 
L 9 HOH H 33 333 28 HOH HOH . 
L 9 HOH H 34 334 169 HOH HOH . 
L 9 HOH H 35 335 188 HOH HOH . 
L 9 HOH H 36 336 70 HOH HOH . 
L 9 HOH H 37 337 12 HOH HOH . 
L 9 HOH H 38 338 6 HOH HOH . 
L 9 HOH H 39 339 158 HOH HOH . 
L 9 HOH H 40 340 193 HOH HOH . 
L 9 HOH H 41 341 48 HOH HOH . 
L 9 HOH H 42 342 108 HOH HOH . 
L 9 HOH H 43 343 64 HOH HOH . 
L 9 HOH H 44 344 176 HOH HOH . 
L 9 HOH H 45 345 44 HOH HOH . 
L 9 HOH H 46 346 62 HOH HOH . 
L 9 HOH H 47 347 102 HOH HOH . 
L 9 HOH H 48 348 152 HOH HOH . 
L 9 HOH H 49 349 88 HOH HOH . 
L 9 HOH H 50 350 87 HOH HOH . 
L 9 HOH H 51 351 185 HOH HOH . 
L 9 HOH H 52 352 40 HOH HOH . 
L 9 HOH H 53 353 191 HOH HOH . 
L 9 HOH H 54 354 118 HOH HOH . 
L 9 HOH H 55 355 128 HOH HOH . 
L 9 HOH H 56 356 77 HOH HOH . 
L 9 HOH H 57 357 90 HOH HOH . 
L 9 HOH H 58 358 115 HOH HOH . 
L 9 HOH H 59 359 105 HOH HOH . 
L 9 HOH H 60 360 189 HOH HOH . 
L 9 HOH H 61 361 181 HOH HOH . 
L 9 HOH H 62 362 41 HOH HOH . 
L 9 HOH H 63 363 179 HOH HOH . 
L 9 HOH H 64 364 155 HOH HOH . 
L 9 HOH H 65 365 141 HOH HOH . 
L 9 HOH H 66 366 154 HOH HOH . 
L 9 HOH H 67 367 166 HOH HOH . 
L 9 HOH H 68 368 130 HOH HOH . 
L 9 HOH H 69 369 183 HOH HOH . 
L 9 HOH H 70 370 15 HOH HOH . 
L 9 HOH H 71 371 149 HOH HOH . 
L 9 HOH H 72 372 134 HOH HOH . 
L 9 HOH H 73 373 184 HOH HOH . 
L 9 HOH H 74 374 121 HOH HOH . 
L 9 HOH H 75 375 104 HOH HOH . 
L 9 HOH H 76 376 157 HOH HOH . 
L 9 HOH H 77 377 138 HOH HOH . 
L 9 HOH H 78 378 32 HOH HOH . 
L 9 HOH H 79 379 114 HOH HOH . 
L 9 HOH H 80 380 120 HOH HOH . 
L 9 HOH H 81 381 96 HOH HOH . 
L 9 HOH H 82 382 165 HOH HOH . 
L 9 HOH H 83 383 18 HOH HOH . 
L 9 HOH H 84 384 186 HOH HOH . 
L 9 HOH H 85 385 178 HOH HOH . 
L 9 HOH H 86 386 122 HOH HOH . 
L 9 HOH H 87 387 153 HOH HOH . 
L 9 HOH H 88 388 164 HOH HOH . 
M 9 HOH L 1 401 146 HOH HOH . 
M 9 HOH L 2 402 180 HOH HOH . 
M 9 HOH L 3 403 97 HOH HOH . 
M 9 HOH L 4 404 145 HOH HOH . 
M 9 HOH L 5 405 131 HOH HOH . 
M 9 HOH L 6 406 135 HOH HOH . 
M 9 HOH L 7 407 69 HOH HOH . 
M 9 HOH L 8 408 81 HOH HOH . 
M 9 HOH L 9 409 125 HOH HOH . 
M 9 HOH L 10 410 83 HOH HOH . 
M 9 HOH L 11 411 79 HOH HOH . 
M 9 HOH L 12 412 94 HOH HOH . 
M 9 HOH L 13 413 107 HOH HOH . 
M 9 HOH L 14 414 23 HOH HOH . 
M 9 HOH L 15 415 190 HOH HOH . 
M 9 HOH L 16 416 99 HOH HOH . 
M 9 HOH L 17 417 82 HOH HOH . 
M 9 HOH L 18 418 5 HOH HOH . 
M 9 HOH L 19 419 61 HOH HOH . 
M 9 HOH L 20 420 19 HOH HOH . 
M 9 HOH L 21 421 27 HOH HOH . 
M 9 HOH L 22 422 192 HOH HOH . 
M 9 HOH L 23 423 10 HOH HOH . 
M 9 HOH L 24 424 76 HOH HOH . 
M 9 HOH L 25 425 127 HOH HOH . 
M 9 HOH L 26 426 74 HOH HOH . 
M 9 HOH L 27 427 66 HOH HOH . 
M 9 HOH L 28 428 112 HOH HOH . 
M 9 HOH L 29 429 162 HOH HOH . 
M 9 HOH L 30 430 49 HOH HOH . 
M 9 HOH L 31 431 60 HOH HOH . 
M 9 HOH L 32 432 33 HOH HOH . 
M 9 HOH L 33 433 1 HOH HOH . 
M 9 HOH L 34 434 73 HOH HOH . 
M 9 HOH L 35 435 42 HOH HOH . 
M 9 HOH L 36 436 110 HOH HOH . 
M 9 HOH L 37 437 39 HOH HOH . 
M 9 HOH L 38 438 58 HOH HOH . 
M 9 HOH L 39 439 167 HOH HOH . 
M 9 HOH L 40 440 68 HOH HOH . 
M 9 HOH L 41 441 175 HOH HOH . 
M 9 HOH L 42 442 170 HOH HOH . 
M 9 HOH L 43 443 89 HOH HOH . 
M 9 HOH L 44 444 2 HOH HOH . 
M 9 HOH L 45 445 35 HOH HOH . 
M 9 HOH L 46 446 31 HOH HOH . 
M 9 HOH L 47 447 106 HOH HOH . 
M 9 HOH L 48 448 151 HOH HOH . 
M 9 HOH L 49 449 43 HOH HOH . 
M 9 HOH L 50 450 7 HOH HOH . 
M 9 HOH L 51 451 13 HOH HOH . 
M 9 HOH L 52 452 17 HOH HOH . 
M 9 HOH L 53 453 63 HOH HOH . 
M 9 HOH L 54 454 168 HOH HOH . 
M 9 HOH L 55 455 4 HOH HOH . 
M 9 HOH L 56 456 182 HOH HOH . 
M 9 HOH L 57 457 100 HOH HOH . 
M 9 HOH L 58 458 45 HOH HOH . 
M 9 HOH L 59 459 20 HOH HOH . 
M 9 HOH L 60 460 3 HOH HOH . 
M 9 HOH L 61 461 173 HOH HOH . 
M 9 HOH L 62 462 51 HOH HOH . 
M 9 HOH L 63 463 84 HOH HOH . 
M 9 HOH L 64 464 47 HOH HOH . 
M 9 HOH L 65 465 55 HOH HOH . 
M 9 HOH L 66 466 126 HOH HOH . 
M 9 HOH L 67 467 29 HOH HOH . 
M 9 HOH L 68 468 117 HOH HOH . 
M 9 HOH L 69 469 136 HOH HOH . 
M 9 HOH L 70 470 139 HOH HOH . 
M 9 HOH L 71 471 177 HOH HOH . 
M 9 HOH L 72 472 140 HOH HOH . 
M 9 HOH L 73 473 171 HOH HOH . 
M 9 HOH L 74 474 172 HOH HOH . 
M 9 HOH L 75 475 56 HOH HOH . 
M 9 HOH L 76 476 174 HOH HOH . 
M 9 HOH L 77 477 187 HOH HOH . 
M 9 HOH L 78 478 194 HOH HOH . 
M 9 HOH L 79 479 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 5 -9.923 50.957 16.856 1 73.07 ? C1 EDO 305 L 1 
HETATM 2 O O1 EDO . . . J 5 -8.73 50.475 17.484 1 75.62 ? O1 EDO 305 L 1 
HETATM 3 C C2 EDO . . . J 5 -10.385 49.96 15.8 1 68.54 ? C2 EDO 305 L 1 
HETATM 4 O O2 EDO . . . J 5 -10.678 48.706 16.424 1 53.11 ? O2 EDO 305 L 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#