data_8GB8 # _model_server_result.job_id ZqXbWsuKvrQuNeOQPgVi1w _model_server_result.datetime_utc '2024-11-16 15:40:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 8GB8 # _exptl.entry_id 8GB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GB8 _cell.length_a 44.544 _cell.length_b 132.184 _cell.length_c 170.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 E CYS 336 1_555 A SG CYS 43 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 61 E CYS 379 1_555 A SG CYS 114 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 73 E CYS 391 1_555 A SG CYS 207 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 162 E CYS 480 1_555 A SG CYS 170 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 148 H CYS 148 1_555 B SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 25 E ASN 343 1_555 D C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8GB8 _atom_sites.fract_transf_matrix[1][1] 0.02245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG E 1 601 528 NAG NAG . E 5 EDO E 1 602 529 EDO EDO . F 6 GOL L 1 301 301 GOL GOL . G 7 GLY L 1 302 212 GLY GLY . H 8 PEG L 1 303 301 PEG PEG . I 5 EDO L 1 304 302 EDO EDO . J 5 EDO L 1 305 303 EDO EDO . K 9 HOH E 1 701 132 HOH HOH . K 9 HOH E 2 702 75 HOH HOH . K 9 HOH E 3 703 86 HOH HOH . K 9 HOH E 4 704 143 HOH HOH . K 9 HOH E 5 705 156 HOH HOH . K 9 HOH E 6 706 161 HOH HOH . K 9 HOH E 7 707 71 HOH HOH . K 9 HOH E 8 708 133 HOH HOH . K 9 HOH E 9 709 46 HOH HOH . K 9 HOH E 10 710 8 HOH HOH . K 9 HOH E 11 711 80 HOH HOH . K 9 HOH E 12 712 93 HOH HOH . K 9 HOH E 13 713 160 HOH HOH . K 9 HOH E 14 714 109 HOH HOH . K 9 HOH E 15 715 92 HOH HOH . K 9 HOH E 16 716 52 HOH HOH . K 9 HOH E 17 717 124 HOH HOH . K 9 HOH E 18 718 72 HOH HOH . K 9 HOH E 19 719 142 HOH HOH . K 9 HOH E 20 720 159 HOH HOH . K 9 HOH E 21 721 101 HOH HOH . K 9 HOH E 22 722 91 HOH HOH . K 9 HOH E 23 723 119 HOH HOH . K 9 HOH E 24 724 148 HOH HOH . K 9 HOH E 25 725 103 HOH HOH . K 9 HOH E 26 726 163 HOH HOH . K 9 HOH E 27 727 129 HOH HOH . L 9 HOH H 1 301 147 HOH HOH . L 9 HOH H 2 302 30 HOH HOH . L 9 HOH H 3 303 113 HOH HOH . L 9 HOH H 4 304 144 HOH HOH . L 9 HOH H 5 305 116 HOH HOH . L 9 HOH H 6 306 14 HOH HOH . L 9 HOH H 7 307 85 HOH HOH . L 9 HOH H 8 308 53 HOH HOH . L 9 HOH H 9 309 78 HOH HOH . L 9 HOH H 10 310 123 HOH HOH . L 9 HOH H 11 311 65 HOH HOH . L 9 HOH H 12 312 25 HOH HOH . L 9 HOH H 13 313 59 HOH HOH . L 9 HOH H 14 314 95 HOH HOH . L 9 HOH H 15 315 11 HOH HOH . L 9 HOH H 16 316 24 HOH HOH . L 9 HOH H 17 317 26 HOH HOH . L 9 HOH H 18 318 21 HOH HOH . L 9 HOH H 19 319 37 HOH HOH . L 9 HOH H 20 320 50 HOH HOH . L 9 HOH H 21 321 54 HOH HOH . L 9 HOH H 22 322 67 HOH HOH . L 9 HOH H 23 323 111 HOH HOH . L 9 HOH H 24 324 36 HOH HOH . L 9 HOH H 25 325 150 HOH HOH . L 9 HOH H 26 326 98 HOH HOH . L 9 HOH H 27 327 22 HOH HOH . L 9 HOH H 28 328 9 HOH HOH . L 9 HOH H 29 329 137 HOH HOH . L 9 HOH H 30 330 34 HOH HOH . L 9 HOH H 31 331 16 HOH HOH . L 9 HOH H 32 332 38 HOH HOH . L 9 HOH H 33 333 28 HOH HOH . L 9 HOH H 34 334 169 HOH HOH . L 9 HOH H 35 335 188 HOH HOH . L 9 HOH H 36 336 70 HOH HOH . L 9 HOH H 37 337 12 HOH HOH . L 9 HOH H 38 338 6 HOH HOH . L 9 HOH H 39 339 158 HOH HOH . L 9 HOH H 40 340 193 HOH HOH . L 9 HOH H 41 341 48 HOH HOH . L 9 HOH H 42 342 108 HOH HOH . L 9 HOH H 43 343 64 HOH HOH . L 9 HOH H 44 344 176 HOH HOH . L 9 HOH H 45 345 44 HOH HOH . L 9 HOH H 46 346 62 HOH HOH . L 9 HOH H 47 347 102 HOH HOH . L 9 HOH H 48 348 152 HOH HOH . L 9 HOH H 49 349 88 HOH HOH . L 9 HOH H 50 350 87 HOH HOH . L 9 HOH H 51 351 185 HOH HOH . L 9 HOH H 52 352 40 HOH HOH . L 9 HOH H 53 353 191 HOH HOH . L 9 HOH H 54 354 118 HOH HOH . L 9 HOH H 55 355 128 HOH HOH . L 9 HOH H 56 356 77 HOH HOH . L 9 HOH H 57 357 90 HOH HOH . L 9 HOH H 58 358 115 HOH HOH . L 9 HOH H 59 359 105 HOH HOH . L 9 HOH H 60 360 189 HOH HOH . L 9 HOH H 61 361 181 HOH HOH . L 9 HOH H 62 362 41 HOH HOH . L 9 HOH H 63 363 179 HOH HOH . L 9 HOH H 64 364 155 HOH HOH . L 9 HOH H 65 365 141 HOH HOH . L 9 HOH H 66 366 154 HOH HOH . L 9 HOH H 67 367 166 HOH HOH . L 9 HOH H 68 368 130 HOH HOH . L 9 HOH H 69 369 183 HOH HOH . L 9 HOH H 70 370 15 HOH HOH . L 9 HOH H 71 371 149 HOH HOH . L 9 HOH H 72 372 134 HOH HOH . L 9 HOH H 73 373 184 HOH HOH . L 9 HOH H 74 374 121 HOH HOH . L 9 HOH H 75 375 104 HOH HOH . L 9 HOH H 76 376 157 HOH HOH . L 9 HOH H 77 377 138 HOH HOH . L 9 HOH H 78 378 32 HOH HOH . L 9 HOH H 79 379 114 HOH HOH . L 9 HOH H 80 380 120 HOH HOH . L 9 HOH H 81 381 96 HOH HOH . L 9 HOH H 82 382 165 HOH HOH . L 9 HOH H 83 383 18 HOH HOH . L 9 HOH H 84 384 186 HOH HOH . L 9 HOH H 85 385 178 HOH HOH . L 9 HOH H 86 386 122 HOH HOH . L 9 HOH H 87 387 153 HOH HOH . L 9 HOH H 88 388 164 HOH HOH . M 9 HOH L 1 401 146 HOH HOH . M 9 HOH L 2 402 180 HOH HOH . M 9 HOH L 3 403 97 HOH HOH . M 9 HOH L 4 404 145 HOH HOH . M 9 HOH L 5 405 131 HOH HOH . M 9 HOH L 6 406 135 HOH HOH . M 9 HOH L 7 407 69 HOH HOH . M 9 HOH L 8 408 81 HOH HOH . M 9 HOH L 9 409 125 HOH HOH . M 9 HOH L 10 410 83 HOH HOH . M 9 HOH L 11 411 79 HOH HOH . M 9 HOH L 12 412 94 HOH HOH . M 9 HOH L 13 413 107 HOH HOH . M 9 HOH L 14 414 23 HOH HOH . M 9 HOH L 15 415 190 HOH HOH . M 9 HOH L 16 416 99 HOH HOH . M 9 HOH L 17 417 82 HOH HOH . M 9 HOH L 18 418 5 HOH HOH . M 9 HOH L 19 419 61 HOH HOH . M 9 HOH L 20 420 19 HOH HOH . M 9 HOH L 21 421 27 HOH HOH . M 9 HOH L 22 422 192 HOH HOH . M 9 HOH L 23 423 10 HOH HOH . M 9 HOH L 24 424 76 HOH HOH . M 9 HOH L 25 425 127 HOH HOH . M 9 HOH L 26 426 74 HOH HOH . M 9 HOH L 27 427 66 HOH HOH . M 9 HOH L 28 428 112 HOH HOH . M 9 HOH L 29 429 162 HOH HOH . M 9 HOH L 30 430 49 HOH HOH . M 9 HOH L 31 431 60 HOH HOH . M 9 HOH L 32 432 33 HOH HOH . M 9 HOH L 33 433 1 HOH HOH . M 9 HOH L 34 434 73 HOH HOH . M 9 HOH L 35 435 42 HOH HOH . M 9 HOH L 36 436 110 HOH HOH . M 9 HOH L 37 437 39 HOH HOH . M 9 HOH L 38 438 58 HOH HOH . M 9 HOH L 39 439 167 HOH HOH . M 9 HOH L 40 440 68 HOH HOH . M 9 HOH L 41 441 175 HOH HOH . M 9 HOH L 42 442 170 HOH HOH . M 9 HOH L 43 443 89 HOH HOH . M 9 HOH L 44 444 2 HOH HOH . M 9 HOH L 45 445 35 HOH HOH . M 9 HOH L 46 446 31 HOH HOH . M 9 HOH L 47 447 106 HOH HOH . M 9 HOH L 48 448 151 HOH HOH . M 9 HOH L 49 449 43 HOH HOH . M 9 HOH L 50 450 7 HOH HOH . M 9 HOH L 51 451 13 HOH HOH . M 9 HOH L 52 452 17 HOH HOH . M 9 HOH L 53 453 63 HOH HOH . M 9 HOH L 54 454 168 HOH HOH . M 9 HOH L 55 455 4 HOH HOH . M 9 HOH L 56 456 182 HOH HOH . M 9 HOH L 57 457 100 HOH HOH . M 9 HOH L 58 458 45 HOH HOH . M 9 HOH L 59 459 20 HOH HOH . M 9 HOH L 60 460 3 HOH HOH . M 9 HOH L 61 461 173 HOH HOH . M 9 HOH L 62 462 51 HOH HOH . M 9 HOH L 63 463 84 HOH HOH . M 9 HOH L 64 464 47 HOH HOH . M 9 HOH L 65 465 55 HOH HOH . M 9 HOH L 66 466 126 HOH HOH . M 9 HOH L 67 467 29 HOH HOH . M 9 HOH L 68 468 117 HOH HOH . M 9 HOH L 69 469 136 HOH HOH . M 9 HOH L 70 470 139 HOH HOH . M 9 HOH L 71 471 177 HOH HOH . M 9 HOH L 72 472 140 HOH HOH . M 9 HOH L 73 473 171 HOH HOH . M 9 HOH L 74 474 172 HOH HOH . M 9 HOH L 75 475 56 HOH HOH . M 9 HOH L 76 476 174 HOH HOH . M 9 HOH L 77 477 187 HOH HOH . M 9 HOH L 78 478 194 HOH HOH . M 9 HOH L 79 479 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -12.165 37.546 53.159 1 130.24 ? C1 NAG 601 E 1 HETATM 2 C C2 NAG . . . D 4 -11.738 37.874 51.726 1 136.91 ? C2 NAG 601 E 1 HETATM 3 C C3 NAG . . . D 4 -12.535 37.032 50.732 1 135.38 ? C3 NAG 601 E 1 HETATM 4 C C4 NAG . . . D 4 -12.431 35.553 51.081 1 135.22 ? C4 NAG 601 E 1 HETATM 5 C C5 NAG . . . D 4 -12.829 35.324 52.537 1 133.68 ? C5 NAG 601 E 1 HETATM 6 C C6 NAG . . . D 4 -12.64 33.893 52.985 1 125.76 ? C6 NAG 601 E 1 HETATM 7 C C7 NAG . . . D 4 -10.87 40.116 51.227 1 100.84 ? C7 NAG 601 E 1 HETATM 8 C C8 NAG . . . D 4 -11.221 41.546 50.946 1 64.81 ? C8 NAG 601 E 1 HETATM 9 N N2 NAG . . . D 4 -11.9 39.291 51.442 1 128.43 ? N2 NAG 601 E 1 HETATM 10 O O3 NAG . . . D 4 -12.042 37.257 49.416 1 133.86 ? O3 NAG 601 E 1 HETATM 11 O O4 NAG . . . D 4 -13.287 34.792 50.236 1 140.2 ? O4 NAG 601 E 1 HETATM 12 O O5 NAG . . . D 4 -12.019 36.138 53.397 1 134.01 ? O5 NAG 601 E 1 HETATM 13 O O6 NAG . . . D 4 -13.741 33.08 52.603 1 115.82 ? O6 NAG 601 E 1 HETATM 14 O O7 NAG . . . D 4 -9.707 39.726 51.259 1 102.88 ? O7 NAG 601 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #