data_8GBU
#
_model_server_result.job_id            JsjoY21_zYLJFFKmsXA5LA 
_model_server_result.datetime_utc      '2024-11-09 02:09:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gbu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":201}' 
#
_entry.id    8GBU 
#
_exptl.entry_id    8GBU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.12 
_cell.angle_gamma         90 
_cell.entry_id            8GBU 
_cell.length_a            151.936 
_cell.length_b            87.879 
_cell.length_c            100.827 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GBU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,U,V 1 1 
C,D,K,L,M,N,W,X 2 1 
E,F,O,P,Q,R,S,T,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 64 A CYS 61 1_555 B SG CYS 64 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 C SG CYS 64 C CYS 61 1_555 D SG CYS 64 D CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 E SG CYS 64 E CYS 61 1_555 F SG CYS 64 F CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8GBU 
_atom_sites.fract_transf_matrix[1][1]    0.006582 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001656 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011379 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 YWE A 1 501 501 YWE AL5 . 
H 2 YWE A 1 502 501 YWE AL5 . 
I 3 EDO A 1 503 10 EDO EDO . 
J 2 YWE B 1 501 501 YWE AL5 . 
K 2 YWE C 1 501 501 YWE AL5 . 
L 3 EDO C 1 502 1 EDO EDO . 
M 3 EDO C 1 503 7 EDO EDO . 
N 3 EDO D 1 201 11 EDO EDO . 
O 2 YWE E 1 501 501 YWE AL5 . 
P 2 YWE E 1 502 501 YWE AL5 . 
Q 3 EDO E 1 503 13 EDO EDO . 
R 3 EDO E 1 504 16 EDO EDO . 
S 3 EDO F 1 201 8 EDO EDO . 
T 3 EDO F 1 202 14 EDO EDO . 
U 4 HOH A 1 601 33 HOH HOH . 
U 4 HOH A 2 602 134 HOH HOH . 
U 4 HOH A 3 603 8 HOH HOH . 
U 4 HOH A 4 604 115 HOH HOH . 
U 4 HOH A 5 605 133 HOH HOH . 
U 4 HOH A 6 606 36 HOH HOH . 
U 4 HOH A 7 607 46 HOH HOH . 
U 4 HOH A 8 608 118 HOH HOH . 
U 4 HOH A 9 609 123 HOH HOH . 
U 4 HOH A 10 610 63 HOH HOH . 
U 4 HOH A 11 611 161 HOH HOH . 
U 4 HOH A 12 612 122 HOH HOH . 
U 4 HOH A 13 613 64 HOH HOH . 
V 4 HOH B 1 601 92 HOH HOH . 
V 4 HOH B 2 602 42 HOH HOH . 
V 4 HOH B 3 603 4 HOH HOH . 
V 4 HOH B 4 604 106 HOH HOH . 
V 4 HOH B 5 605 3 HOH HOH . 
V 4 HOH B 6 606 127 HOH HOH . 
V 4 HOH B 7 607 112 HOH HOH . 
V 4 HOH B 8 608 83 HOH HOH . 
V 4 HOH B 9 609 107 HOH HOH . 
V 4 HOH B 10 610 88 HOH HOH . 
W 4 HOH C 1 601 53 HOH HOH . 
W 4 HOH C 2 602 167 HOH HOH . 
W 4 HOH C 3 603 71 HOH HOH . 
W 4 HOH C 4 604 160 HOH HOH . 
W 4 HOH C 5 605 18 HOH HOH . 
W 4 HOH C 6 606 22 HOH HOH . 
W 4 HOH C 7 607 30 HOH HOH . 
W 4 HOH C 8 608 35 HOH HOH . 
W 4 HOH C 9 609 149 HOH HOH . 
W 4 HOH C 10 610 62 HOH HOH . 
W 4 HOH C 11 611 5 HOH HOH . 
W 4 HOH C 12 612 52 HOH HOH . 
W 4 HOH C 13 613 48 HOH HOH . 
W 4 HOH C 14 614 153 HOH HOH . 
W 4 HOH C 15 615 111 HOH HOH . 
W 4 HOH C 16 616 125 HOH HOH . 
W 4 HOH C 17 617 76 HOH HOH . 
X 4 HOH D 1 301 66 HOH HOH . 
X 4 HOH D 2 302 47 HOH HOH . 
X 4 HOH D 3 303 17 HOH HOH . 
X 4 HOH D 4 304 117 HOH HOH . 
X 4 HOH D 5 305 50 HOH HOH . 
X 4 HOH D 6 306 45 HOH HOH . 
X 4 HOH D 7 307 126 HOH HOH . 
X 4 HOH D 8 308 24 HOH HOH . 
X 4 HOH D 9 309 41 HOH HOH . 
X 4 HOH D 10 310 172 HOH HOH . 
X 4 HOH D 11 311 32 HOH HOH . 
X 4 HOH D 12 312 82 HOH HOH . 
X 4 HOH D 13 313 130 HOH HOH . 
Y 4 HOH E 1 601 20 HOH HOH . 
Y 4 HOH E 2 602 164 HOH HOH . 
Y 4 HOH E 3 603 13 HOH HOH . 
Y 4 HOH E 4 604 11 HOH HOH . 
Y 4 HOH E 5 605 132 HOH HOH . 
Y 4 HOH E 6 606 1 HOH HOH . 
Y 4 HOH E 7 607 93 HOH HOH . 
Y 4 HOH E 8 608 124 HOH HOH . 
Y 4 HOH E 9 609 9 HOH HOH . 
Y 4 HOH E 10 610 56 HOH HOH . 
Z 4 HOH F 1 301 12 HOH HOH . 
Z 4 HOH F 2 302 156 HOH HOH . 
Z 4 HOH F 3 303 166 HOH HOH . 
Z 4 HOH F 4 304 140 HOH HOH . 
Z 4 HOH F 5 305 154 HOH HOH . 
Z 4 HOH F 6 306 6 HOH HOH . 
Z 4 HOH F 7 307 158 HOH HOH . 
Z 4 HOH F 8 308 155 HOH HOH . 
Z 4 HOH F 9 309 171 HOH HOH . 
Z 4 HOH F 10 310 55 HOH HOH . 
Z 4 HOH F 11 311 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . S 3 -5.544 -7.601 10.34 1 90.68 ? C1 EDO 201 F 1 
HETATM 2 O O1 EDO . . . S 3 -6.435 -6.483 10.241 1 85.63 ? O1 EDO 201 F 1 
HETATM 3 C C2 EDO . . . S 3 -4.057 -7.236 10.134 1 92.11 ? C2 EDO 201 F 1 
HETATM 4 O O2 EDO . . . S 3 -3.153 -8.268 10.598 1 85.52 ? O2 EDO 201 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#