data_8GBU # _model_server_result.job_id l8y0eCCjLAESs-jWnGt28w _model_server_result.datetime_utc '2024-11-09 02:07:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 8GBU # _exptl.entry_id 8GBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.849 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1-methyl-1H-1,2,4-triazol-3-yl)methyl {(1S)-4-[(3-chloro-4-fluorophenyl)carbamoyl]-7-fluoro-2,3-dihydro-1H-inden-1-yl}carbamate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.12 _cell.angle_gamma 90 _cell.entry_id 8GBU _cell.length_a 151.936 _cell.length_b 87.879 _cell.length_c 100.827 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,U,V 1 1 C,D,K,L,M,N,W,X 2 1 E,F,O,P,Q,R,S,T,Y,Z 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 61 1_555 B SG CYS 64 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 C SG CYS 64 C CYS 61 1_555 D SG CYS 64 D CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 E SG CYS 64 E CYS 61 1_555 F SG CYS 64 F CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? # _chem_comp.formula 'C21 H18 Cl F2 N5 O3' _chem_comp.formula_weight 461.849 _chem_comp.id YWE _chem_comp.mon_nstd_flag . _chem_comp.name '(1-methyl-1H-1,2,4-triazol-3-yl)methyl {(1S)-4-[(3-chloro-4-fluorophenyl)carbamoyl]-7-fluoro-2,3-dihydro-1H-inden-1-yl}carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 N04 YWE doub 385 n y C03 N02 YWE sing 386 n y N04 C05 YWE sing 387 n y N02 C01 YWE sing 388 n n N02 N32 YWE sing 389 n y C05 N32 YWE doub 390 n y C05 C06 YWE sing 391 n n C06 O07 YWE sing 392 n n O07 C08 YWE sing 393 n n C08 N10 YWE sing 394 n n C08 O09 YWE doub 395 n n N10 C11 YWE sing 396 n n C12 C11 YWE sing 397 n n C12 C13 YWE sing 398 n n C11 C20 YWE sing 399 n n F19 C18 YWE sing 400 n n C20 C18 YWE doub 401 n y C20 C14 YWE sing 402 n y C18 C17 YWE sing 403 n y C13 C14 YWE sing 404 n n C14 C15 YWE doub 405 n y C17 C16 YWE doub 406 n y C15 C16 YWE sing 407 n y C15 C21 YWE sing 408 n n O22 C21 YWE doub 409 n n C21 N23 YWE sing 410 n n CL30 C29 YWE sing 411 n n C31 C29 YWE doub 412 n y C31 C24 YWE sing 413 n y N23 C24 YWE sing 414 n n C29 C27 YWE sing 415 n y C24 C25 YWE doub 416 n y C27 F28 YWE sing 417 n n C27 C26 YWE doub 418 n y C25 C26 YWE sing 419 n y C11 H1 YWE sing 420 n n C12 H2 YWE sing 421 n n C12 H3 YWE sing 422 n n C13 H4 YWE sing 423 n n C13 H5 YWE sing 424 n n C16 H6 YWE sing 425 n n C01 H7 YWE sing 426 n n C01 H8 YWE sing 427 n n C01 H9 YWE sing 428 n n C03 H10 YWE sing 429 n n C06 H11 YWE sing 430 n n C06 H12 YWE sing 431 n n N10 H13 YWE sing 432 n n C17 H14 YWE sing 433 n n N23 H15 YWE sing 434 n n C25 H16 YWE sing 435 n n C26 H17 YWE sing 436 n n C31 H18 YWE sing 437 n n # _atom_sites.entry_id 8GBU _atom_sites.fract_transf_matrix[1][1] 0.006582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 YWE A 1 501 501 YWE AL5 . H 2 YWE A 1 502 501 YWE AL5 . I 3 EDO A 1 503 10 EDO EDO . J 2 YWE B 1 501 501 YWE AL5 . K 2 YWE C 1 501 501 YWE AL5 . L 3 EDO C 1 502 1 EDO EDO . M 3 EDO C 1 503 7 EDO EDO . N 3 EDO D 1 201 11 EDO EDO . O 2 YWE E 1 501 501 YWE AL5 . P 2 YWE E 1 502 501 YWE AL5 . Q 3 EDO E 1 503 13 EDO EDO . R 3 EDO E 1 504 16 EDO EDO . S 3 EDO F 1 201 8 EDO EDO . T 3 EDO F 1 202 14 EDO EDO . U 4 HOH A 1 601 33 HOH HOH . U 4 HOH A 2 602 134 HOH HOH . U 4 HOH A 3 603 8 HOH HOH . U 4 HOH A 4 604 115 HOH HOH . U 4 HOH A 5 605 133 HOH HOH . U 4 HOH A 6 606 36 HOH HOH . U 4 HOH A 7 607 46 HOH HOH . U 4 HOH A 8 608 118 HOH HOH . U 4 HOH A 9 609 123 HOH HOH . U 4 HOH A 10 610 63 HOH HOH . U 4 HOH A 11 611 161 HOH HOH . U 4 HOH A 12 612 122 HOH HOH . U 4 HOH A 13 613 64 HOH HOH . V 4 HOH B 1 601 92 HOH HOH . V 4 HOH B 2 602 42 HOH HOH . V 4 HOH B 3 603 4 HOH HOH . V 4 HOH B 4 604 106 HOH HOH . V 4 HOH B 5 605 3 HOH HOH . V 4 HOH B 6 606 127 HOH HOH . V 4 HOH B 7 607 112 HOH HOH . V 4 HOH B 8 608 83 HOH HOH . V 4 HOH B 9 609 107 HOH HOH . V 4 HOH B 10 610 88 HOH HOH . W 4 HOH C 1 601 53 HOH HOH . W 4 HOH C 2 602 167 HOH HOH . W 4 HOH C 3 603 71 HOH HOH . W 4 HOH C 4 604 160 HOH HOH . W 4 HOH C 5 605 18 HOH HOH . W 4 HOH C 6 606 22 HOH HOH . W 4 HOH C 7 607 30 HOH HOH . W 4 HOH C 8 608 35 HOH HOH . W 4 HOH C 9 609 149 HOH HOH . W 4 HOH C 10 610 62 HOH HOH . W 4 HOH C 11 611 5 HOH HOH . W 4 HOH C 12 612 52 HOH HOH . W 4 HOH C 13 613 48 HOH HOH . W 4 HOH C 14 614 153 HOH HOH . W 4 HOH C 15 615 111 HOH HOH . W 4 HOH C 16 616 125 HOH HOH . W 4 HOH C 17 617 76 HOH HOH . X 4 HOH D 1 301 66 HOH HOH . X 4 HOH D 2 302 47 HOH HOH . X 4 HOH D 3 303 17 HOH HOH . X 4 HOH D 4 304 117 HOH HOH . X 4 HOH D 5 305 50 HOH HOH . X 4 HOH D 6 306 45 HOH HOH . X 4 HOH D 7 307 126 HOH HOH . X 4 HOH D 8 308 24 HOH HOH . X 4 HOH D 9 309 41 HOH HOH . X 4 HOH D 10 310 172 HOH HOH . X 4 HOH D 11 311 32 HOH HOH . X 4 HOH D 12 312 82 HOH HOH . X 4 HOH D 13 313 130 HOH HOH . Y 4 HOH E 1 601 20 HOH HOH . Y 4 HOH E 2 602 164 HOH HOH . Y 4 HOH E 3 603 13 HOH HOH . Y 4 HOH E 4 604 11 HOH HOH . Y 4 HOH E 5 605 132 HOH HOH . Y 4 HOH E 6 606 1 HOH HOH . Y 4 HOH E 7 607 93 HOH HOH . Y 4 HOH E 8 608 124 HOH HOH . Y 4 HOH E 9 609 9 HOH HOH . Y 4 HOH E 10 610 56 HOH HOH . Z 4 HOH F 1 301 12 HOH HOH . Z 4 HOH F 2 302 156 HOH HOH . Z 4 HOH F 3 303 166 HOH HOH . Z 4 HOH F 4 304 140 HOH HOH . Z 4 HOH F 5 305 154 HOH HOH . Z 4 HOH F 6 306 6 HOH HOH . Z 4 HOH F 7 307 158 HOH HOH . Z 4 HOH F 8 308 155 HOH HOH . Z 4 HOH F 9 309 171 HOH HOH . Z 4 HOH F 10 310 55 HOH HOH . Z 4 HOH F 11 311 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 YWE . A . G 2 -16.665 33.996 22.314 0.4 92.78 ? C11 YWE 501 A 1 HETATM 2 C C11 YWE . B . G 2 -16.794 34.066 22.388 0.5 62.33 ? C11 YWE 501 A 1 HETATM 3 C C12 YWE . A . G 2 -18.194 34.183 22.119 0.4 92.54 ? C12 YWE 501 A 1 HETATM 4 C C12 YWE . B . G 2 -18.328 34.097 22.153 0.5 62.77 ? C12 YWE 501 A 1 HETATM 5 C C13 YWE . A . G 2 -18.88 33.239 23.142 0.4 90.36 ? C13 YWE 501 A 1 HETATM 6 C C13 YWE . B . G 2 -18.886 33.308 23.364 0.5 61.61 ? C13 YWE 501 A 1 HETATM 7 C C14 YWE . A . G 2 -17.823 32.165 23.379 0.4 90.03 ? C14 YWE 501 A 1 HETATM 8 C C14 YWE . B . G 2 -17.854 32.193 23.476 0.5 62.22 ? C14 YWE 501 A 1 HETATM 9 C C15 YWE . A . G 2 -17.966 30.915 23.965 0.4 86.81 ? C15 YWE 501 A 1 HETATM 10 C C15 YWE . B . G 2 -17.965 30.91 24.01 0.5 61.91 ? C15 YWE 501 A 1 HETATM 11 C C16 YWE . A . G 2 -16.85 30.094 24.056 0.4 90.53 ? C16 YWE 501 A 1 HETATM 12 C C16 YWE . B . G 2 -16.845 30.09 23.953 0.5 63.86 ? C16 YWE 501 A 1 HETATM 13 C C01 YWE . A . G 2 -10.402 36.954 17.713 0.4 106.22 ? C01 YWE 501 A 1 HETATM 14 C C01 YWE . B . G 2 -12.371 35.932 14.532 0.5 72.7 ? C01 YWE 501 A 1 HETATM 15 N N02 YWE . A . G 2 -11.81 36.677 17.463 0.4 109.16 ? N02 YWE 501 A 1 HETATM 16 N N02 YWE . B . G 2 -12.695 36.034 15.949 0.5 75.58 ? N02 YWE 501 A 1 HETATM 17 C C03 YWE . A . G 2 -12.444 36.235 16.36 0.4 111.03 ? C03 YWE 501 A 1 HETATM 18 C C03 YWE . B . G 2 -11.931 36.346 17.016 0.5 76.31 ? C03 YWE 501 A 1 HETATM 19 N N04 YWE . A . G 2 -13.735 36.129 16.585 0.4 110.72 ? N04 YWE 501 A 1 HETATM 20 N N04 YWE . B . G 2 -12.642 36.316 18.122 0.5 73.16 ? N04 YWE 501 A 1 HETATM 21 C C05 YWE . A . G 2 -13.883 36.525 17.894 0.4 109.06 ? C05 YWE 501 A 1 HETATM 22 C C05 YWE . B . G 2 -13.904 35.965 17.687 0.5 75.36 ? C05 YWE 501 A 1 HETATM 23 C C06 YWE . A . G 2 -15.232 36.556 18.538 0.4 106.86 ? C06 YWE 501 A 1 HETATM 24 C C06 YWE . B . G 2 -15.026 35.818 18.657 0.5 74.24 ? C06 YWE 501 A 1 HETATM 25 O O07 YWE . A . G 2 -15.56 35.317 19.203 0.4 102.24 ? O07 YWE 501 A 1 HETATM 26 O O07 YWE . B . G 2 -14.473 35.386 19.92 0.5 70.81 ? O07 YWE 501 A 1 HETATM 27 C C08 YWE . A . G 2 -15.499 35.288 20.569 0.4 95.58 ? C08 YWE 501 A 1 HETATM 28 C C08 YWE . B . G 2 -15.203 35.441 21.067 0.5 62.3 ? C08 YWE 501 A 1 HETATM 29 O O09 YWE . A . G 2 -15.082 36.215 21.24 0.4 88.48 ? O09 YWE 501 A 1 HETATM 30 O O09 YWE . B . G 2 -15.05 36.343 21.86 0.5 55.61 ? O09 YWE 501 A 1 HETATM 31 N N10 YWE . A . G 2 -15.949 34.102 21.037 0.4 93.38 ? N10 YWE 501 A 1 HETATM 32 N N10 YWE . B . G 2 -16.034 34.37 21.165 0.5 61.35 ? N10 YWE 501 A 1 HETATM 33 C C17 YWE . A . G 2 -15.624 30.521 23.592 0.4 92.03 ? C17 YWE 501 A 1 HETATM 34 C C17 YWE . B . G 2 -15.662 30.518 23.392 0.5 63.92 ? C17 YWE 501 A 1 HETATM 35 C C18 YWE . A . G 2 -15.506 31.768 23.021 0.4 93.43 ? C18 YWE 501 A 1 HETATM 36 C C18 YWE . B . G 2 -15.575 31.785 22.869 0.5 64.14 ? C18 YWE 501 A 1 HETATM 37 F F19 YWE . A . G 2 -14.292 32.153 22.569 0.4 96.04 ? F19 YWE 501 A 1 HETATM 38 F F19 YWE . B . G 2 -14.395 32.154 22.32 0.5 63.81 ? F19 YWE 501 A 1 HETATM 39 C C20 YWE . A . G 2 -16.594 32.594 22.905 0.4 92.82 ? C20 YWE 501 A 1 HETATM 40 C C20 YWE . B . G 2 -16.661 32.631 22.9 0.5 63.6 ? C20 YWE 501 A 1 HETATM 41 C C21 YWE . A . G 2 -19.328 30.518 24.416 0.4 81.13 ? C21 YWE 501 A 1 HETATM 42 C C21 YWE . B . G 2 -19.243 30.408 24.608 0.5 59.33 ? C21 YWE 501 A 1 HETATM 43 O O22 YWE . A . G 2 -19.821 29.431 24.169 0.4 72.75 ? O22 YWE 501 A 1 HETATM 44 O O22 YWE . B . G 2 -19.352 29.359 25.205 0.5 55.53 ? O22 YWE 501 A 1 HETATM 45 N N23 YWE . A . G 2 -19.99 31.494 25.096 0.4 80.78 ? N23 YWE 501 A 1 HETATM 46 N N23 YWE . B . G 2 -20.292 31.237 24.388 0.5 61.14 ? N23 YWE 501 A 1 HETATM 47 C C24 YWE . A . G 2 -21.309 31.457 25.56 0.4 80.91 ? C24 YWE 501 A 1 HETATM 48 C C24 YWE . B . G 2 -21.653 31.151 24.743 0.5 59.93 ? C24 YWE 501 A 1 HETATM 49 C C25 YWE . A . G 2 -21.73 32.328 26.557 0.4 80.28 ? C25 YWE 501 A 1 HETATM 50 C C25 YWE . B . G 2 -22.473 30.381 23.929 0.5 57.53 ? C25 YWE 501 A 1 HETATM 51 C C26 YWE . A . G 2 -23.038 32.332 26.977 0.4 79.77 ? C26 YWE 501 A 1 HETATM 52 C C26 YWE . B . G 2 -23.82 30.272 24.175 0.5 59.86 ? C26 YWE 501 A 1 HETATM 53 C C27 YWE . A . G 2 -23.947 31.488 26.394 0.4 81.25 ? C27 YWE 501 A 1 HETATM 54 C C27 YWE . B . G 2 -24.373 30.945 25.236 0.5 62.28 ? C27 YWE 501 A 1 HETATM 55 F F28 YWE . A . G 2 -25.225 31.512 26.822 0.4 81.24 ? F28 YWE 501 A 1 HETATM 56 F F28 YWE . B . G 2 -25.695 30.854 25.501 0.5 64.8 ? F28 YWE 501 A 1 HETATM 57 C C29 YWE . A . G 2 -23.532 30.643 25.396 0.4 82.27 ? C29 YWE 501 A 1 HETATM 58 C C29 YWE . B . G 2 -23.571 31.711 26.027 0.5 60.5 ? C29 YWE 501 A 1 HETATM 59 CL CL30 YWE . A . G 2 -24.686 29.514 24.607 0.4 83.32 ? CL30 YWE 501 A 1 HETATM 60 CL CL30 YWE . B . G 2 -24.353 32.562 27.396 0.5 55.49 ? CL30 YWE 501 A 1 HETATM 61 C C31 YWE . A . G 2 -22.238 30.623 24.961 0.4 80.15 ? C31 YWE 501 A 1 HETATM 62 C C31 YWE . B . G 2 -22.224 31.837 25.808 0.5 60.33 ? C31 YWE 501 A 1 HETATM 63 N N32 YWE . A . G 2 -12.757 36.869 18.469 0.4 107.13 ? N32 YWE 501 A 1 HETATM 64 N N32 YWE . B . G 2 -13.995 35.782 16.396 0.5 75.96 ? N32 YWE 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 64 #