data_8GBU
#
_model_server_result.job_id            MIxyRjAr_gtDgZjURwkHvw 
_model_server_result.datetime_utc      '2024-11-09 02:03:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gbu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    8GBU 
#
_exptl.entry_id    8GBU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              461.849 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1-methyl-1H-1,2,4-triazol-3-yl)methyl {(1S)-4-[(3-chloro-4-fluorophenyl)carbamoyl]-7-fluoro-2,3-dihydro-1H-inden-1-yl}carbamate' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.12 
_cell.angle_gamma         90 
_cell.entry_id            8GBU 
_cell.length_a            151.936 
_cell.length_b            87.879 
_cell.length_c            100.827 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GBU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,U,V 1 1 
C,D,K,L,M,N,W,X 2 1 
E,F,O,P,Q,R,S,T,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 64 A CYS 61 1_555 B SG CYS 64 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 C SG CYS 64 C CYS 61 1_555 D SG CYS 64 D CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 E SG CYS 64 E CYS 61 1_555 F SG CYS 64 F CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
#
_chem_comp.formula           'C21 H18 Cl F2 N5 O3' 
_chem_comp.formula_weight    461.849 
_chem_comp.id                YWE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1-methyl-1H-1,2,4-triazol-3-yl)methyl {(1S)-4-[(3-chloro-4-fluorophenyl)carbamoyl]-7-fluoro-2,3-dihydro-1H-inden-1-yl}carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C03 N04 YWE doub 385 n y 
C03 N02 YWE sing 386 n y 
N04 C05 YWE sing 387 n y 
N02 C01 YWE sing 388 n n 
N02 N32 YWE sing 389 n y 
C05 N32 YWE doub 390 n y 
C05 C06 YWE sing 391 n n 
C06 O07 YWE sing 392 n n 
O07 C08 YWE sing 393 n n 
C08 N10 YWE sing 394 n n 
C08 O09 YWE doub 395 n n 
N10 C11 YWE sing 396 n n 
C12 C11 YWE sing 397 n n 
C12 C13 YWE sing 398 n n 
C11 C20 YWE sing 399 n n 
F19 C18 YWE sing 400 n n 
C20 C18 YWE doub 401 n y 
C20 C14 YWE sing 402 n y 
C18 C17 YWE sing 403 n y 
C13 C14 YWE sing 404 n n 
C14 C15 YWE doub 405 n y 
C17 C16 YWE doub 406 n y 
C15 C16 YWE sing 407 n y 
C15 C21 YWE sing 408 n n 
O22 C21 YWE doub 409 n n 
C21 N23 YWE sing 410 n n 
CL30 C29 YWE sing 411 n n 
C31 C29 YWE doub 412 n y 
C31 C24 YWE sing 413 n y 
N23 C24 YWE sing 414 n n 
C29 C27 YWE sing 415 n y 
C24 C25 YWE doub 416 n y 
C27 F28 YWE sing 417 n n 
C27 C26 YWE doub 418 n y 
C25 C26 YWE sing 419 n y 
C11 H1 YWE sing 420 n n 
C12 H2 YWE sing 421 n n 
C12 H3 YWE sing 422 n n 
C13 H4 YWE sing 423 n n 
C13 H5 YWE sing 424 n n 
C16 H6 YWE sing 425 n n 
C01 H7 YWE sing 426 n n 
C01 H8 YWE sing 427 n n 
C01 H9 YWE sing 428 n n 
C03 H10 YWE sing 429 n n 
C06 H11 YWE sing 430 n n 
C06 H12 YWE sing 431 n n 
N10 H13 YWE sing 432 n n 
C17 H14 YWE sing 433 n n 
N23 H15 YWE sing 434 n n 
C25 H16 YWE sing 435 n n 
C26 H17 YWE sing 436 n n 
C31 H18 YWE sing 437 n n 
#
_atom_sites.entry_id                     8GBU 
_atom_sites.fract_transf_matrix[1][1]    0.006582 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001656 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011379 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 YWE A 1 501 501 YWE AL5 . 
H 2 YWE A 1 502 501 YWE AL5 . 
I 3 EDO A 1 503 10 EDO EDO . 
J 2 YWE B 1 501 501 YWE AL5 . 
K 2 YWE C 1 501 501 YWE AL5 . 
L 3 EDO C 1 502 1 EDO EDO . 
M 3 EDO C 1 503 7 EDO EDO . 
N 3 EDO D 1 201 11 EDO EDO . 
O 2 YWE E 1 501 501 YWE AL5 . 
P 2 YWE E 1 502 501 YWE AL5 . 
Q 3 EDO E 1 503 13 EDO EDO . 
R 3 EDO E 1 504 16 EDO EDO . 
S 3 EDO F 1 201 8 EDO EDO . 
T 3 EDO F 1 202 14 EDO EDO . 
U 4 HOH A 1 601 33 HOH HOH . 
U 4 HOH A 2 602 134 HOH HOH . 
U 4 HOH A 3 603 8 HOH HOH . 
U 4 HOH A 4 604 115 HOH HOH . 
U 4 HOH A 5 605 133 HOH HOH . 
U 4 HOH A 6 606 36 HOH HOH . 
U 4 HOH A 7 607 46 HOH HOH . 
U 4 HOH A 8 608 118 HOH HOH . 
U 4 HOH A 9 609 123 HOH HOH . 
U 4 HOH A 10 610 63 HOH HOH . 
U 4 HOH A 11 611 161 HOH HOH . 
U 4 HOH A 12 612 122 HOH HOH . 
U 4 HOH A 13 613 64 HOH HOH . 
V 4 HOH B 1 601 92 HOH HOH . 
V 4 HOH B 2 602 42 HOH HOH . 
V 4 HOH B 3 603 4 HOH HOH . 
V 4 HOH B 4 604 106 HOH HOH . 
V 4 HOH B 5 605 3 HOH HOH . 
V 4 HOH B 6 606 127 HOH HOH . 
V 4 HOH B 7 607 112 HOH HOH . 
V 4 HOH B 8 608 83 HOH HOH . 
V 4 HOH B 9 609 107 HOH HOH . 
V 4 HOH B 10 610 88 HOH HOH . 
W 4 HOH C 1 601 53 HOH HOH . 
W 4 HOH C 2 602 167 HOH HOH . 
W 4 HOH C 3 603 71 HOH HOH . 
W 4 HOH C 4 604 160 HOH HOH . 
W 4 HOH C 5 605 18 HOH HOH . 
W 4 HOH C 6 606 22 HOH HOH . 
W 4 HOH C 7 607 30 HOH HOH . 
W 4 HOH C 8 608 35 HOH HOH . 
W 4 HOH C 9 609 149 HOH HOH . 
W 4 HOH C 10 610 62 HOH HOH . 
W 4 HOH C 11 611 5 HOH HOH . 
W 4 HOH C 12 612 52 HOH HOH . 
W 4 HOH C 13 613 48 HOH HOH . 
W 4 HOH C 14 614 153 HOH HOH . 
W 4 HOH C 15 615 111 HOH HOH . 
W 4 HOH C 16 616 125 HOH HOH . 
W 4 HOH C 17 617 76 HOH HOH . 
X 4 HOH D 1 301 66 HOH HOH . 
X 4 HOH D 2 302 47 HOH HOH . 
X 4 HOH D 3 303 17 HOH HOH . 
X 4 HOH D 4 304 117 HOH HOH . 
X 4 HOH D 5 305 50 HOH HOH . 
X 4 HOH D 6 306 45 HOH HOH . 
X 4 HOH D 7 307 126 HOH HOH . 
X 4 HOH D 8 308 24 HOH HOH . 
X 4 HOH D 9 309 41 HOH HOH . 
X 4 HOH D 10 310 172 HOH HOH . 
X 4 HOH D 11 311 32 HOH HOH . 
X 4 HOH D 12 312 82 HOH HOH . 
X 4 HOH D 13 313 130 HOH HOH . 
Y 4 HOH E 1 601 20 HOH HOH . 
Y 4 HOH E 2 602 164 HOH HOH . 
Y 4 HOH E 3 603 13 HOH HOH . 
Y 4 HOH E 4 604 11 HOH HOH . 
Y 4 HOH E 5 605 132 HOH HOH . 
Y 4 HOH E 6 606 1 HOH HOH . 
Y 4 HOH E 7 607 93 HOH HOH . 
Y 4 HOH E 8 608 124 HOH HOH . 
Y 4 HOH E 9 609 9 HOH HOH . 
Y 4 HOH E 10 610 56 HOH HOH . 
Z 4 HOH F 1 301 12 HOH HOH . 
Z 4 HOH F 2 302 156 HOH HOH . 
Z 4 HOH F 3 303 166 HOH HOH . 
Z 4 HOH F 4 304 140 HOH HOH . 
Z 4 HOH F 5 305 154 HOH HOH . 
Z 4 HOH F 6 306 6 HOH HOH . 
Z 4 HOH F 7 307 158 HOH HOH . 
Z 4 HOH F 8 308 155 HOH HOH . 
Z 4 HOH F 9 309 171 HOH HOH . 
Z 4 HOH F 10 310 55 HOH HOH . 
Z 4 HOH F 11 311 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 YWE . . . K 2 -61.479 -14.423 21.655 0.94 93.42 ? C11 YWE 501 C 1 
HETATM 2 C C12 YWE . . . K 2 -60.724 -15.713 21.267 0.94 95.69 ? C12 YWE 501 C 1 
HETATM 3 C C13 YWE . . . K 2 -59.851 -15.956 22.524 0.94 93.84 ? C13 YWE 501 C 1 
HETATM 4 C C14 YWE . . . K 2 -59.376 -14.537 22.885 0.94 94.48 ? C14 YWE 501 C 1 
HETATM 5 C C15 YWE . . . K 2 -58.247 -14.038 23.602 0.94 87.13 ? C15 YWE 501 C 1 
HETATM 6 C C16 YWE . . . K 2 -58.127 -12.648 23.699 0.94 88.73 ? C16 YWE 501 C 1 
HETATM 7 C C01 YWE . . . K 2 -64.042 -11.599 14.037 0.94 94.5 ? C01 YWE 501 C 1 
HETATM 8 N N02 YWE . . . K 2 -64.776 -11.836 15.273 0.94 94.69 ? N02 YWE 501 C 1 
HETATM 9 C C03 YWE . . . K 2 -65.978 -11.405 15.69 0.94 93.14 ? C03 YWE 501 C 1 
HETATM 10 N N04 YWE . . . K 2 -66.248 -11.868 16.892 0.94 92.06 ? N04 YWE 501 C 1 
HETATM 11 C C05 YWE . . . K 2 -65.146 -12.616 17.214 0.94 94.82 ? C05 YWE 501 C 1 
HETATM 12 C C06 YWE . . . K 2 -65.079 -13.31 18.533 0.94 95.61 ? C06 YWE 501 C 1 
HETATM 13 O O07 YWE . . . K 2 -63.718 -13.625 18.937 0.94 91.87 ? O07 YWE 501 C 1 
HETATM 14 C C08 YWE . . . K 2 -63.425 -13.744 20.263 0.94 88.28 ? C08 YWE 501 C 1 
HETATM 15 O O09 YWE . . . K 2 -64.293 -13.815 21.11 0.94 87.39 ? O09 YWE 501 C 1 
HETATM 16 N N10 YWE . . . K 2 -62.082 -13.76 20.478 0.94 90.21 ? N10 YWE 501 C 1 
HETATM 17 C C17 YWE . . . K 2 -59.082 -11.802 23.173 0.94 93.66 ? C17 YWE 501 C 1 
HETATM 18 C C18 YWE . . . K 2 -60.176 -12.317 22.506 0.94 93.83 ? C18 YWE 501 C 1 
HETATM 19 F F19 YWE . . . K 2 -61.096 -11.474 22.003 0.94 104.73 ? F19 YWE 501 C 1 
HETATM 20 C C20 YWE . . . K 2 -60.337 -13.668 22.348 0.94 95.56 ? C20 YWE 501 C 1 
HETATM 21 C C21 YWE . . . K 2 -57.142 -14.911 24.153 0.94 80.53 ? C21 YWE 501 C 1 
HETATM 22 O O22 YWE . . . K 2 -56.004 -14.482 24.29 0.94 67.17 ? O22 YWE 501 C 1 
HETATM 23 N N23 YWE . . . K 2 -57.437 -16.22 24.468 0.94 79.44 ? N23 YWE 501 C 1 
HETATM 24 C C24 YWE . . . K 2 -56.626 -17.298 24.833 0.94 74.23 ? C24 YWE 501 C 1 
HETATM 25 C C25 YWE . . . K 2 -55.571 -17.506 23.926 0.94 72.07 ? C25 YWE 501 C 1 
HETATM 26 C C26 YWE . . . K 2 -54.684 -18.538 24.036 0.94 69.07 ? C26 YWE 501 C 1 
HETATM 27 C C27 YWE . . . K 2 -54.877 -19.421 25.043 0.94 74.45 ? C27 YWE 501 C 1 
HETATM 28 F F28 YWE . . . K 2 -54.014 -20.439 25.168 0.94 81.02 ? F28 YWE 501 C 1 
HETATM 29 C C29 YWE . . . K 2 -55.934 -19.257 25.906 0.94 76.23 ? C29 YWE 501 C 1 
HETATM 30 CL CL30 YWE . . . K 2 -56.105 -20.473 27.198 0.94 89.66 ? CL30 YWE 501 C 1 
HETATM 31 C C31 YWE . . . K 2 -56.837 -18.226 25.832 0.94 73.11 ? C31 YWE 501 C 1 
HETATM 32 N N32 YWE . . . K 2 -64.232 -12.639 16.275 0.94 96.44 ? N32 YWE 501 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#