data_8GC8 # _model_server_result.job_id BqDrd6BjlxOel7tm0wB-dQ _model_server_result.datetime_utc '2024-12-27 02:27:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8GC8 # _exptl.entry_id 8GC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(piperidin-1-yl)-3-[4-(piperidin-4-yl)anilino]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GC8 _cell.length_a 38.38 _cell.length_b 72.4 _cell.length_c 104.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N6 O' _chem_comp.formula_weight 380.487 _chem_comp.id YXJ _chem_comp.mon_nstd_flag . _chem_comp.name 5-(piperidin-1-yl)-3-[4-(piperidin-4-yl)anilino]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 YXJ sing 385 n n C19 C20 YXJ sing 386 n n C18 C17 YXJ sing 387 n n C20 C21 YXJ sing 388 n n C15 C16 YXJ sing 389 n n C15 N5 YXJ sing 390 n n C16 C12 YXJ sing 391 n n C17 N6 YXJ sing 392 n n N5 C14 YXJ sing 393 n n C21 N6 YXJ sing 394 n n N6 C4 YXJ sing 395 n n C14 C13 YXJ sing 396 n n C12 C13 YXJ sing 397 n n C12 C9 YXJ sing 398 n n C8 C9 YXJ doub 399 n y C8 C7 YXJ sing 400 n y C4 N3 YXJ doub 401 n y C4 C3 YXJ sing 402 n y C9 C10 YXJ sing 403 n y C7 C6 YXJ doub 404 n y N3 C5 YXJ sing 405 n y C3 N2 YXJ doub 406 n y C10 C11 YXJ doub 407 n y C6 C11 YXJ sing 408 n y C6 N4 YXJ sing 409 n n C5 N4 YXJ sing 410 n n C5 C2 YXJ doub 411 n y N2 C2 YXJ sing 412 n y C2 C1 YXJ sing 413 n n C1 O1 YXJ doub 414 n n C1 N1 YXJ sing 415 n n C14 H12 YXJ sing 416 n n C14 H13 YXJ sing 417 n n C11 H8 YXJ sing 418 n n C7 H5 YXJ sing 419 n n C8 H6 YXJ sing 420 n n C10 H7 YXJ sing 421 n n C12 H9 YXJ sing 422 n n C13 H11 YXJ sing 423 n n C13 H10 YXJ sing 424 n n N1 H2 YXJ sing 425 n n N1 H1 YXJ sing 426 n n C3 H3 YXJ sing 427 n n C15 H16 YXJ sing 428 n n C15 H15 YXJ sing 429 n n C16 H18 YXJ sing 430 n n C16 H17 YXJ sing 431 n n C17 H19 YXJ sing 432 n n C17 H20 YXJ sing 433 n n C18 H22 YXJ sing 434 n n C18 H21 YXJ sing 435 n n C19 H23 YXJ sing 436 n n C19 H24 YXJ sing 437 n n C20 H25 YXJ sing 438 n n C20 H26 YXJ sing 439 n n C21 H28 YXJ sing 440 n n C21 H27 YXJ sing 441 n n N4 H4 YXJ sing 442 n n N5 H14 YXJ sing 443 n n # _atom_sites.entry_id 8GC8 _atom_sites.fract_transf_matrix[1][1] 0.026055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YXJ A 1 701 701 YXJ DRG . C 3 EDO A 1 702 801 EDO EDO . D 3 EDO A 1 703 901 EDO EDO . E 3 EDO A 1 704 1001 EDO EDO . F 3 EDO A 1 705 1101 EDO EDO . G 3 EDO A 1 706 1201 EDO EDO . H 4 HOH A 1 801 68 HOH HOH . H 4 HOH A 2 802 69 HOH HOH . H 4 HOH A 3 803 112 HOH HOH . H 4 HOH A 4 804 58 HOH HOH . H 4 HOH A 5 805 124 HOH HOH . H 4 HOH A 6 806 61 HOH HOH . H 4 HOH A 7 807 97 HOH HOH . H 4 HOH A 8 808 78 HOH HOH . H 4 HOH A 9 809 120 HOH HOH . H 4 HOH A 10 810 96 HOH HOH . H 4 HOH A 11 811 85 HOH HOH . H 4 HOH A 12 812 91 HOH HOH . H 4 HOH A 13 813 76 HOH HOH . H 4 HOH A 14 814 92 HOH HOH . H 4 HOH A 15 815 98 HOH HOH . H 4 HOH A 16 816 139 HOH HOH . H 4 HOH A 17 817 2 HOH HOH . H 4 HOH A 18 818 87 HOH HOH . H 4 HOH A 19 819 128 HOH HOH . H 4 HOH A 20 820 144 HOH HOH . H 4 HOH A 21 821 75 HOH HOH . H 4 HOH A 22 822 146 HOH HOH . H 4 HOH A 23 823 20 HOH HOH . H 4 HOH A 24 824 121 HOH HOH . H 4 HOH A 25 825 132 HOH HOH . H 4 HOH A 26 826 7 HOH HOH . H 4 HOH A 27 827 32 HOH HOH . H 4 HOH A 28 828 34 HOH HOH . H 4 HOH A 29 829 16 HOH HOH . H 4 HOH A 30 830 100 HOH HOH . H 4 HOH A 31 831 33 HOH HOH . H 4 HOH A 32 832 41 HOH HOH . H 4 HOH A 33 833 30 HOH HOH . H 4 HOH A 34 834 36 HOH HOH . H 4 HOH A 35 835 18 HOH HOH . H 4 HOH A 36 836 35 HOH HOH . H 4 HOH A 37 837 143 HOH HOH . H 4 HOH A 38 838 135 HOH HOH . H 4 HOH A 39 839 21 HOH HOH . H 4 HOH A 40 840 106 HOH HOH . H 4 HOH A 41 841 108 HOH HOH . H 4 HOH A 42 842 79 HOH HOH . H 4 HOH A 43 843 72 HOH HOH . H 4 HOH A 44 844 115 HOH HOH . H 4 HOH A 45 845 4 HOH HOH . H 4 HOH A 46 846 17 HOH HOH . H 4 HOH A 47 847 51 HOH HOH . H 4 HOH A 48 848 6 HOH HOH . H 4 HOH A 49 849 46 HOH HOH . H 4 HOH A 50 850 13 HOH HOH . H 4 HOH A 51 851 88 HOH HOH . H 4 HOH A 52 852 77 HOH HOH . H 4 HOH A 53 853 107 HOH HOH . H 4 HOH A 54 854 73 HOH HOH . H 4 HOH A 55 855 82 HOH HOH . H 4 HOH A 56 856 45 HOH HOH . H 4 HOH A 57 857 23 HOH HOH . H 4 HOH A 58 858 44 HOH HOH . H 4 HOH A 59 859 60 HOH HOH . H 4 HOH A 60 860 1 HOH HOH . H 4 HOH A 61 861 84 HOH HOH . H 4 HOH A 62 862 19 HOH HOH . H 4 HOH A 63 863 31 HOH HOH . H 4 HOH A 64 864 24 HOH HOH . H 4 HOH A 65 865 14 HOH HOH . H 4 HOH A 66 866 48 HOH HOH . H 4 HOH A 67 867 138 HOH HOH . H 4 HOH A 68 868 136 HOH HOH . H 4 HOH A 69 869 15 HOH HOH . H 4 HOH A 70 870 40 HOH HOH . H 4 HOH A 71 871 109 HOH HOH . H 4 HOH A 72 872 64 HOH HOH . H 4 HOH A 73 873 140 HOH HOH . H 4 HOH A 74 874 9 HOH HOH . H 4 HOH A 75 875 42 HOH HOH . H 4 HOH A 76 876 90 HOH HOH . H 4 HOH A 77 877 38 HOH HOH . H 4 HOH A 78 878 50 HOH HOH . H 4 HOH A 79 879 56 HOH HOH . H 4 HOH A 80 880 28 HOH HOH . H 4 HOH A 81 881 94 HOH HOH . H 4 HOH A 82 882 65 HOH HOH . H 4 HOH A 83 883 134 HOH HOH . H 4 HOH A 84 884 11 HOH HOH . H 4 HOH A 85 885 25 HOH HOH . H 4 HOH A 86 886 71 HOH HOH . H 4 HOH A 87 887 145 HOH HOH . H 4 HOH A 88 888 53 HOH HOH . H 4 HOH A 89 889 26 HOH HOH . H 4 HOH A 90 890 47 HOH HOH . H 4 HOH A 91 891 27 HOH HOH . H 4 HOH A 92 892 29 HOH HOH . H 4 HOH A 93 893 102 HOH HOH . H 4 HOH A 94 894 101 HOH HOH . H 4 HOH A 95 895 127 HOH HOH . H 4 HOH A 96 896 10 HOH HOH . H 4 HOH A 97 897 37 HOH HOH . H 4 HOH A 98 898 22 HOH HOH . H 4 HOH A 99 899 114 HOH HOH . H 4 HOH A 100 900 117 HOH HOH . H 4 HOH A 101 901 3 HOH HOH . H 4 HOH A 102 902 54 HOH HOH . H 4 HOH A 103 903 57 HOH HOH . H 4 HOH A 104 904 133 HOH HOH . H 4 HOH A 105 905 80 HOH HOH . H 4 HOH A 106 906 119 HOH HOH . H 4 HOH A 107 907 74 HOH HOH . H 4 HOH A 108 908 95 HOH HOH . H 4 HOH A 109 909 103 HOH HOH . H 4 HOH A 110 910 142 HOH HOH . H 4 HOH A 111 911 137 HOH HOH . H 4 HOH A 112 912 104 HOH HOH . H 4 HOH A 113 913 110 HOH HOH . H 4 HOH A 114 914 126 HOH HOH . H 4 HOH A 115 915 99 HOH HOH . H 4 HOH A 116 916 89 HOH HOH . H 4 HOH A 117 917 141 HOH HOH . H 4 HOH A 118 918 116 HOH HOH . H 4 HOH A 119 919 130 HOH HOH . H 4 HOH A 120 920 62 HOH HOH . H 4 HOH A 121 921 83 HOH HOH . H 4 HOH A 122 922 70 HOH HOH . H 4 HOH A 123 923 49 HOH HOH . H 4 HOH A 124 924 118 HOH HOH . H 4 HOH A 125 925 52 HOH HOH . H 4 HOH A 126 926 43 HOH HOH . H 4 HOH A 127 927 39 HOH HOH . H 4 HOH A 128 928 105 HOH HOH . H 4 HOH A 129 929 129 HOH HOH . H 4 HOH A 130 930 59 HOH HOH . H 4 HOH A 131 931 81 HOH HOH . H 4 HOH A 132 932 131 HOH HOH . H 4 HOH A 133 933 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 YXJ . . . B 2 -1.781 -19.121 5.68 1 29.75 ? C4 YXJ 701 A 1 HETATM 2 C C14 YXJ . . . B 2 7.554 -21.959 6.189 1 43.93 ? C14 YXJ 701 A 1 HETATM 3 C C5 YXJ . . . B 2 -0.15 -17.536 5.277 1 27.07 ? C5 YXJ 701 A 1 HETATM 4 C C6 YXJ . . . B 2 2.329 -17.974 5.409 1 26.96 ? C6 YXJ 701 A 1 HETATM 5 C C11 YXJ . . . B 2 3.524 -17.317 5.139 1 28.67 ? C11 YXJ 701 A 1 HETATM 6 C C7 YXJ . . . B 2 2.379 -19.285 5.887 1 30.04 ? C7 YXJ 701 A 1 HETATM 7 C C8 YXJ . . . B 2 3.606 -19.908 6.089 1 28.54 ? C8 YXJ 701 A 1 HETATM 8 C C9 YXJ . . . B 2 4.799 -19.261 5.81 1 28.99 ? C9 YXJ 701 A 1 HETATM 9 C C10 YXJ . . . B 2 4.738 -17.956 5.346 1 28.65 ? C10 YXJ 701 A 1 HETATM 10 C C12 YXJ . . . B 2 6.135 -19.946 6.009 1 35.12 ? C12 YXJ 701 A 1 HETATM 11 C C13 YXJ . . . B 2 6.128 -21.465 6.04 1 40.76 ? C13 YXJ 701 A 1 HETATM 12 N N1 YXJ . . . B 2 -1.859 -14.254 4.966 1 28.15 ? N1 YXJ 701 A 1 HETATM 13 N N2 YXJ . . . B 2 -2.444 -16.867 5.294 1 28.74 ? N2 YXJ 701 A 1 HETATM 14 C C3 YXJ . . . B 2 -2.769 -18.136 5.546 1 29.44 ? C3 YXJ 701 A 1 HETATM 15 N N3 YXJ . . . B 2 -0.488 -18.805 5.542 1 27.47 ? N3 YXJ 701 A 1 HETATM 16 C C1 YXJ . . . B 2 -0.846 -15.092 4.861 1 26.46 ? C1 YXJ 701 A 1 HETATM 17 C C15 YXJ . . . B 2 8.205 -20.01 7.47 1 41.67 ? C15 YXJ 701 A 1 HETATM 18 C C16 YXJ . . . B 2 6.83 -19.408 7.26 1 33.1 ? C16 YXJ 701 A 1 HETATM 19 C C17 YXJ . . . B 2 -1.103 -21.478 5.63 1 35.77 ? C17 YXJ 701 A 1 HETATM 20 C C18 YXJ . . . B 2 -1.324 -22.801 6.331 1 40.03 ? C18 YXJ 701 A 1 HETATM 21 C C19 YXJ . . . B 2 -2.764 -23.247 6.227 1 41.19 ? C19 YXJ 701 A 1 HETATM 22 C C2 YXJ . . . B 2 -1.153 -16.537 5.158 1 24.94 ? C2 YXJ 701 A 1 HETATM 23 C C20 YXJ . . . B 2 -3.576 -22.187 6.934 1 41.9 ? C20 YXJ 701 A 1 HETATM 24 C C21 YXJ . . . B 2 -3.466 -20.853 6.226 1 35.43 ? C21 YXJ 701 A 1 HETATM 25 N N4 YXJ . . . B 2 1.165 -17.22 5.158 1 25.96 ? N4 YXJ 701 A 1 HETATM 26 N N5 YXJ . . . B 2 8.143 -21.475 7.443 1 43.62 ? N5 YXJ 701 A 1 HETATM 27 N N6 YXJ . . . B 2 -2.092 -20.43 5.915 1 32.23 ? N6 YXJ 701 A 1 HETATM 28 O O1 YXJ . . . B 2 0.285 -14.734 4.502 1 26.7 ? O1 YXJ 701 A 1 HETATM 29 H H12 YXJ . . . B 2 8.105 -21.637 5.421 1 52.72 ? H12 YXJ 701 A 1 HETATM 30 H H13 YXJ . . . B 2 7.567 -22.957 6.184 1 52.72 ? H13 YXJ 701 A 1 HETATM 31 H H8 YXJ . . . B 2 3.507 -16.433 4.814 1 34.41 ? H8 YXJ 701 A 1 HETATM 32 H H5 YXJ . . . B 2 1.578 -19.747 6.071 1 36.05 ? H5 YXJ 701 A 1 HETATM 33 H H6 YXJ . . . B 2 3.625 -20.787 6.423 1 34.25 ? H6 YXJ 701 A 1 HETATM 34 H H7 YXJ . . . B 2 5.537 -17.493 5.168 1 34.38 ? H7 YXJ 701 A 1 HETATM 35 H H9 YXJ . . . B 2 6.665 -19.736 5.196 1 42.15 ? H9 YXJ 701 A 1 HETATM 36 H H11 YXJ . . . B 2 5.74 -21.81 5.219 1 48.92 ? H11 YXJ 701 A 1 HETATM 37 H H10 YXJ . . . B 2 5.589 -21.778 6.785 1 48.92 ? H10 YXJ 701 A 1 HETATM 38 H H2 YXJ . . . B 2 -2.658 -14.551 5.227 1 33.79 ? H2 YXJ 701 A 1 HETATM 39 H H1 YXJ . . . B 2 -1.746 -13.392 4.775 1 33.79 ? H1 YXJ 701 A 1 HETATM 40 H H3 YXJ . . . B 2 -3.68 -18.366 5.635 1 35.33 ? H3 YXJ 701 A 1 HETATM 41 H H16 YXJ . . . B 2 8.571 -19.713 8.349 1 50.01 ? H16 YXJ 701 A 1 HETATM 42 H H15 YXJ . . . B 2 8.822 -19.695 6.752 1 50.01 ? H15 YXJ 701 A 1 HETATM 43 H H18 YXJ . . . B 2 6.915 -18.443 7.183 1 39.73 ? H18 YXJ 701 A 1 HETATM 44 H H17 YXJ . . . B 2 6.277 -19.602 8.036 1 39.73 ? H17 YXJ 701 A 1 HETATM 45 H H19 YXJ . . . B 2 -1.101 -21.639 4.657 1 42.92 ? H19 YXJ 701 A 1 HETATM 46 H H20 YXJ . . . B 2 -0.214 -21.136 5.887 1 42.92 ? H20 YXJ 701 A 1 HETATM 47 H H22 YXJ . . . B 2 -0.741 -23.483 5.928 1 48.04 ? H22 YXJ 701 A 1 HETATM 48 H H21 YXJ . . . B 2 -1.077 -22.712 7.278 1 48.04 ? H21 YXJ 701 A 1 HETATM 49 H H23 YXJ . . . B 2 -2.888 -24.121 6.653 1 49.43 ? H23 YXJ 701 A 1 HETATM 50 H H24 YXJ . . . B 2 -3.037 -23.324 5.288 1 49.43 ? H24 YXJ 701 A 1 HETATM 51 H H25 YXJ . . . B 2 -3.256 -22.092 7.859 1 50.28 ? H25 YXJ 701 A 1 HETATM 52 H H26 YXJ . . . B 2 -4.519 -22.463 6.965 1 50.28 ? H26 YXJ 701 A 1 HETATM 53 H H28 YXJ . . . B 2 -3.881 -20.161 6.793 1 42.53 ? H28 YXJ 701 A 1 HETATM 54 H H27 YXJ . . . B 2 -3.972 -20.903 5.381 1 42.53 ? H27 YXJ 701 A 1 HETATM 55 H H4 YXJ . . . B 2 1.317 -16.4 4.876 1 31.16 ? H4 YXJ 701 A 1 HETATM 56 H H14 YXJ . . . B 2 7.63 -21.747 8.117 1 52.35 ? H14 YXJ 701 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 56 #