data_8GC8 # _model_server_result.job_id 7Ok8OCzMpu1k6sN1utIqJQ _model_server_result.datetime_utc '2024-12-27 02:22:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 8GC8 # _exptl.entry_id 8GC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GC8 _cell.length_a 38.38 _cell.length_b 72.4 _cell.length_c 104.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8GC8 _atom_sites.fract_transf_matrix[1][1] 0.026055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YXJ A 1 701 701 YXJ DRG . C 3 EDO A 1 702 801 EDO EDO . D 3 EDO A 1 703 901 EDO EDO . E 3 EDO A 1 704 1001 EDO EDO . F 3 EDO A 1 705 1101 EDO EDO . G 3 EDO A 1 706 1201 EDO EDO . H 4 HOH A 1 801 68 HOH HOH . H 4 HOH A 2 802 69 HOH HOH . H 4 HOH A 3 803 112 HOH HOH . H 4 HOH A 4 804 58 HOH HOH . H 4 HOH A 5 805 124 HOH HOH . H 4 HOH A 6 806 61 HOH HOH . H 4 HOH A 7 807 97 HOH HOH . H 4 HOH A 8 808 78 HOH HOH . H 4 HOH A 9 809 120 HOH HOH . H 4 HOH A 10 810 96 HOH HOH . H 4 HOH A 11 811 85 HOH HOH . H 4 HOH A 12 812 91 HOH HOH . H 4 HOH A 13 813 76 HOH HOH . H 4 HOH A 14 814 92 HOH HOH . H 4 HOH A 15 815 98 HOH HOH . H 4 HOH A 16 816 139 HOH HOH . H 4 HOH A 17 817 2 HOH HOH . H 4 HOH A 18 818 87 HOH HOH . H 4 HOH A 19 819 128 HOH HOH . H 4 HOH A 20 820 144 HOH HOH . H 4 HOH A 21 821 75 HOH HOH . H 4 HOH A 22 822 146 HOH HOH . H 4 HOH A 23 823 20 HOH HOH . H 4 HOH A 24 824 121 HOH HOH . H 4 HOH A 25 825 132 HOH HOH . H 4 HOH A 26 826 7 HOH HOH . H 4 HOH A 27 827 32 HOH HOH . H 4 HOH A 28 828 34 HOH HOH . H 4 HOH A 29 829 16 HOH HOH . H 4 HOH A 30 830 100 HOH HOH . H 4 HOH A 31 831 33 HOH HOH . H 4 HOH A 32 832 41 HOH HOH . H 4 HOH A 33 833 30 HOH HOH . H 4 HOH A 34 834 36 HOH HOH . H 4 HOH A 35 835 18 HOH HOH . H 4 HOH A 36 836 35 HOH HOH . H 4 HOH A 37 837 143 HOH HOH . H 4 HOH A 38 838 135 HOH HOH . H 4 HOH A 39 839 21 HOH HOH . H 4 HOH A 40 840 106 HOH HOH . H 4 HOH A 41 841 108 HOH HOH . H 4 HOH A 42 842 79 HOH HOH . H 4 HOH A 43 843 72 HOH HOH . H 4 HOH A 44 844 115 HOH HOH . H 4 HOH A 45 845 4 HOH HOH . H 4 HOH A 46 846 17 HOH HOH . H 4 HOH A 47 847 51 HOH HOH . H 4 HOH A 48 848 6 HOH HOH . H 4 HOH A 49 849 46 HOH HOH . H 4 HOH A 50 850 13 HOH HOH . H 4 HOH A 51 851 88 HOH HOH . H 4 HOH A 52 852 77 HOH HOH . H 4 HOH A 53 853 107 HOH HOH . H 4 HOH A 54 854 73 HOH HOH . H 4 HOH A 55 855 82 HOH HOH . H 4 HOH A 56 856 45 HOH HOH . H 4 HOH A 57 857 23 HOH HOH . H 4 HOH A 58 858 44 HOH HOH . H 4 HOH A 59 859 60 HOH HOH . H 4 HOH A 60 860 1 HOH HOH . H 4 HOH A 61 861 84 HOH HOH . H 4 HOH A 62 862 19 HOH HOH . H 4 HOH A 63 863 31 HOH HOH . H 4 HOH A 64 864 24 HOH HOH . H 4 HOH A 65 865 14 HOH HOH . H 4 HOH A 66 866 48 HOH HOH . H 4 HOH A 67 867 138 HOH HOH . H 4 HOH A 68 868 136 HOH HOH . H 4 HOH A 69 869 15 HOH HOH . H 4 HOH A 70 870 40 HOH HOH . H 4 HOH A 71 871 109 HOH HOH . H 4 HOH A 72 872 64 HOH HOH . H 4 HOH A 73 873 140 HOH HOH . H 4 HOH A 74 874 9 HOH HOH . H 4 HOH A 75 875 42 HOH HOH . H 4 HOH A 76 876 90 HOH HOH . H 4 HOH A 77 877 38 HOH HOH . H 4 HOH A 78 878 50 HOH HOH . H 4 HOH A 79 879 56 HOH HOH . H 4 HOH A 80 880 28 HOH HOH . H 4 HOH A 81 881 94 HOH HOH . H 4 HOH A 82 882 65 HOH HOH . H 4 HOH A 83 883 134 HOH HOH . H 4 HOH A 84 884 11 HOH HOH . H 4 HOH A 85 885 25 HOH HOH . H 4 HOH A 86 886 71 HOH HOH . H 4 HOH A 87 887 145 HOH HOH . H 4 HOH A 88 888 53 HOH HOH . H 4 HOH A 89 889 26 HOH HOH . H 4 HOH A 90 890 47 HOH HOH . H 4 HOH A 91 891 27 HOH HOH . H 4 HOH A 92 892 29 HOH HOH . H 4 HOH A 93 893 102 HOH HOH . H 4 HOH A 94 894 101 HOH HOH . H 4 HOH A 95 895 127 HOH HOH . H 4 HOH A 96 896 10 HOH HOH . H 4 HOH A 97 897 37 HOH HOH . H 4 HOH A 98 898 22 HOH HOH . H 4 HOH A 99 899 114 HOH HOH . H 4 HOH A 100 900 117 HOH HOH . H 4 HOH A 101 901 3 HOH HOH . H 4 HOH A 102 902 54 HOH HOH . H 4 HOH A 103 903 57 HOH HOH . H 4 HOH A 104 904 133 HOH HOH . H 4 HOH A 105 905 80 HOH HOH . H 4 HOH A 106 906 119 HOH HOH . H 4 HOH A 107 907 74 HOH HOH . H 4 HOH A 108 908 95 HOH HOH . H 4 HOH A 109 909 103 HOH HOH . H 4 HOH A 110 910 142 HOH HOH . H 4 HOH A 111 911 137 HOH HOH . H 4 HOH A 112 912 104 HOH HOH . H 4 HOH A 113 913 110 HOH HOH . H 4 HOH A 114 914 126 HOH HOH . H 4 HOH A 115 915 99 HOH HOH . H 4 HOH A 116 916 89 HOH HOH . H 4 HOH A 117 917 141 HOH HOH . H 4 HOH A 118 918 116 HOH HOH . H 4 HOH A 119 919 130 HOH HOH . H 4 HOH A 120 920 62 HOH HOH . H 4 HOH A 121 921 83 HOH HOH . H 4 HOH A 122 922 70 HOH HOH . H 4 HOH A 123 923 49 HOH HOH . H 4 HOH A 124 924 118 HOH HOH . H 4 HOH A 125 925 52 HOH HOH . H 4 HOH A 126 926 43 HOH HOH . H 4 HOH A 127 927 39 HOH HOH . H 4 HOH A 128 928 105 HOH HOH . H 4 HOH A 129 929 129 HOH HOH . H 4 HOH A 130 930 59 HOH HOH . H 4 HOH A 131 931 81 HOH HOH . H 4 HOH A 132 932 131 HOH HOH . H 4 HOH A 133 933 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -0.398 -26.192 34.678 1 35.24 ? C1 EDO 703 A 1 HETATM 2 O O1 EDO . . . D 3 -0.17 -26.298 33.263 1 35.82 ? O1 EDO 703 A 1 HETATM 3 C C2 EDO . . . D 3 -0.833 -24.777 35.055 1 37.46 ? C2 EDO 703 A 1 HETATM 4 O O2 EDO . . . D 3 -0.085 -23.794 34.325 1 32.66 ? O2 EDO 703 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #