data_8GD7 # _model_server_result.job_id giawyQIfjjZsuRaFJ88EZw _model_server_result.datetime_utc '2025-08-21 18:07:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2603}' # _entry.id 8GD7 # _exptl.entry_id 8GD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.348 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3-methyl-2-oxoimidazolidin-1-yl)-4,6-bis(trifluoromethyl)phenyl (4-fluorophenyl)methylcarbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GD7 _cell.length_a 171.433 _cell.length_b 171.433 _cell.length_c 63.167 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 401 A ASP 2330 1_555 D MG MG . A MG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc2 A OD2 ASP 602 A ASP 2540 1_555 D MG MG . A MG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc3 D MG MG . A MG 2601 1_555 E O1B DG3 . A DG3 2602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc4 D MG MG . A MG 2601 1_555 E O1G DG3 . A DG3 2602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc5 D MG MG . A MG 2601 1_555 E O3B DG3 . A DG3 2602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc6 D MG MG . A MG 2601 1_555 E O1A DG3 . A DG3 2602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? hydrog WATSON-CRICK hydrog1 B N1 DG 11 E DG 11 1_555 C N3 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 11 E DG 11 1_555 C O2 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 11 E DG 11 1_555 C N4 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 12 E DC 12 1_555 C N1 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 12 E DC 12 1_555 C O6 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 12 E DC 12 1_555 C N2 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 13 E DG 13 1_555 C N3 DC 12 F DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 13 E DG 13 1_555 C O2 DC 12 F DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 13 E DG 13 1_555 C N4 DC 12 F DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 14 E DC 14 1_555 C N1 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 14 E DC 14 1_555 C O6 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 14 E DC 14 1_555 C N2 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DT 15 E DT 15 1_555 C N1 DA 10 F DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O4 DT 15 E DT 15 1_555 C N6 DA 10 F DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 16 E DG 16 1_555 C N3 DC 9 F DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 16 E DG 16 1_555 C O2 DC 9 F DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 16 E DG 16 1_555 C N4 DC 9 F DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 17 E DC 17 1_555 C N1 DG 8 F DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 17 E DC 17 1_555 C O6 DG 8 F DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 17 E DC 17 1_555 C N2 DG 8 F DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DG 18 E DG 18 1_555 C N3 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N2 DG 18 E DG 18 1_555 C O2 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O6 DG 18 E DG 18 1_555 C N4 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DA 19 E DA 19 1_555 C N3 DT 6 F DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N6 DA 19 E DA 19 1_555 C O4 DT 6 F DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H16 F7 N3 O3' _chem_comp.formula_weight 479.348 _chem_comp.id Z5X _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3-methyl-2-oxoimidazolidin-1-yl)-4,6-bis(trifluoromethyl)phenyl (4-fluorophenyl)methylcarbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 C19 Z5X doub 571 n n C18 N17 Z5X sing 572 n n C01 N02 Z5X sing 573 n n O33 C10 Z5X doub 574 n n C19 N17 Z5X sing 575 n n C19 N14 Z5X sing 576 n n N17 C16 Z5X sing 577 n n F24 C23 Z5X sing 578 n n C10 N02 Z5X sing 579 n n C10 O11 Z5X sing 580 n n N02 C03 Z5X sing 581 n n N14 C13 Z5X sing 582 n n N14 C15 Z5X sing 583 n n C16 C15 Z5X sing 584 n n F25 C23 Z5X sing 585 n n C21 C13 Z5X doub 586 n y C21 C22 Z5X sing 587 n y C13 C12 Z5X sing 588 n y C23 C22 Z5X sing 589 n n C23 F26 Z5X sing 590 n n C22 C27 Z5X doub 591 n y F32 C29 Z5X sing 592 n n C12 O11 Z5X sing 593 n n C12 C28 Z5X doub 594 n y C27 C28 Z5X sing 595 n y C28 C29 Z5X sing 596 n n C03 C09 Z5X doub 597 n y C03 C04 Z5X sing 598 n y C29 F31 Z5X sing 599 n n C29 F30 Z5X sing 600 n n C09 C08 Z5X sing 601 n y C04 C05 Z5X doub 602 n y C08 C06 Z5X doub 603 n y C05 C06 Z5X sing 604 n y C06 F07 Z5X sing 605 n n C01 H1 Z5X sing 606 n n C01 H2 Z5X sing 607 n n C01 H3 Z5X sing 608 n n C04 H4 Z5X sing 609 n n C05 H5 Z5X sing 610 n n C08 H6 Z5X sing 611 n n C09 H7 Z5X sing 612 n n C15 H8 Z5X sing 613 n n C16 H9 Z5X sing 614 n n C18 H10 Z5X sing 615 n n C18 H11 Z5X sing 616 n n C18 H12 Z5X sing 617 n n C21 H13 Z5X sing 618 n n C27 H14 Z5X sing 619 n n C15 H15 Z5X sing 620 n n C16 H16 Z5X sing 621 n n # _atom_sites.entry_id 8GD7 _atom_sites.fract_transf_matrix[1][1] 0.005833 _atom_sites.fract_transf_matrix[1][2] 0.003368 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 2601 2603 MG MG . E 5 DG3 A 1 2602 2604 DG3 DG3 . F 6 Z5X A 1 2603 2605 Z5X 152 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 Z5X . . . F 6 70.024 46.018 -15.425 1 122 ? C01 Z5X 2603 A 1 HETATM 2 C C03 Z5X . . . F 6 70.232 45.699 -12.929 1 119.42 ? C03 Z5X 2603 A 1 HETATM 3 C C04 Z5X . . . F 6 69.287 46.462 -12.263 1 118.5 ? C04 Z5X 2603 A 1 HETATM 4 C C05 Z5X . . . F 6 69.562 46.952 -10.998 1 117.17 ? C05 Z5X 2603 A 1 HETATM 5 C C06 Z5X . . . F 6 70.779 46.673 -10.398 1 116.93 ? C06 Z5X 2603 A 1 HETATM 6 C C08 Z5X . . . F 6 71.721 45.906 -11.062 1 117.66 ? C08 Z5X 2603 A 1 HETATM 7 C C09 Z5X . . . F 6 71.446 45.415 -12.327 1 118.84 ? C09 Z5X 2603 A 1 HETATM 8 C C10 Z5X . . . F 6 69.577 43.773 -14.356 1 121.16 ? C10 Z5X 2603 A 1 HETATM 9 C C12 Z5X . . . F 6 68.778 41.803 -13.287 1 120.3 ? C12 Z5X 2603 A 1 HETATM 10 C C13 Z5X . . . F 6 69.499 40.688 -13.686 1 120.68 ? C13 Z5X 2603 A 1 HETATM 11 C C15 Z5X . . . F 6 71.98 40.982 -13.054 1 118.96 ? C15 Z5X 2603 A 1 HETATM 12 C C16 Z5X . . . F 6 73.272 41.049 -13.811 1 119.27 ? C16 Z5X 2603 A 1 HETATM 13 C C18 Z5X . . . F 6 73.929 40.907 -16.296 1 122.1 ? C18 Z5X 2603 A 1 HETATM 14 C C19 Z5X . . . F 6 71.507 40.747 -15.35 1 122.01 ? C19 Z5X 2603 A 1 HETATM 15 C C21 Z5X . . . F 6 68.866 39.462 -13.792 1 121.11 ? C21 Z5X 2603 A 1 HETATM 16 C C22 Z5X . . . F 6 67.521 39.348 -13.494 1 121.17 ? C22 Z5X 2603 A 1 HETATM 17 C C23 Z5X . . . F 6 66.828 37.998 -13.615 1 121.76 ? C23 Z5X 2603 A 1 HETATM 18 C C27 Z5X . . . F 6 66.802 40.458 -13.09 1 120.6 ? C27 Z5X 2603 A 1 HETATM 19 C C28 Z5X . . . F 6 67.43 41.686 -12.98 1 120.13 ? C28 Z5X 2603 A 1 HETATM 20 C C29 Z5X . . . F 6 66.616 42.9 -12.531 1 119.29 ? C29 Z5X 2603 A 1 HETATM 21 F F07 Z5X . . . F 6 71.05 47.154 -9.151 1 115.65 ? F07 Z5X 2603 A 1 HETATM 22 F F24 Z5X . . . F 6 65.975 38.03 -14.68 1 123.63 ? F24 Z5X 2603 A 1 HETATM 23 F F25 Z5X . . . F 6 67.763 37.022 -13.811 1 121.78 ? F25 Z5X 2603 A 1 HETATM 24 F F26 Z5X . . . F 6 66.127 37.745 -12.471 1 120.34 ? F26 Z5X 2603 A 1 HETATM 25 F F30 Z5X . . . F 6 67.038 43.322 -11.304 1 117.68 ? F30 Z5X 2603 A 1 HETATM 26 F F31 Z5X . . . F 6 65.298 42.548 -12.454 1 119.22 ? F31 Z5X 2603 A 1 HETATM 27 F F32 Z5X . . . F 6 66.765 43.914 -13.432 1 120.12 ? F32 Z5X 2603 A 1 HETATM 28 N N02 Z5X . . . F 6 69.946 45.173 -14.249 1 120.85 ? N02 Z5X 2603 A 1 HETATM 29 N N14 Z5X . . . F 6 70.91 40.802 -14.004 1 120.56 ? N14 Z5X 2603 A 1 HETATM 30 N N17 Z5X . . . F 6 72.965 40.902 -15.213 1 121.17 ? N17 Z5X 2603 A 1 HETATM 31 O O11 Z5X . . . F 6 69.424 43.04 -13.172 1 119.93 ? O11 Z5X 2603 A 1 HETATM 32 O O20 Z5X . . . F 6 70.92 40.605 -16.368 1 123.59 ? O20 Z5X 2603 A 1 HETATM 33 O O33 Z5X . . . F 6 69.412 43.268 -15.415 1 122.48 ? O33 Z5X 2603 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #