data_8GDS # _model_server_result.job_id fjtiOhYRmO6qQtxFzSYNPw _model_server_result.datetime_utc '2024-11-26 21:55:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 8GDS # _exptl.entry_id 8GDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{4-[2-(2,3-dihydro-1H-indol-1-yl)-2-oxoethyl]phenyl}phthalazin-1(2H)-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GDS _cell.length_a 143.084 _cell.length_b 143.329 _cell.length_c 134.363 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,Z 1 1 B,K,L,M,N,AA 2 1 C,O,P,Q,R,S,T,U,BA 3 1 D,V,W,X,Y,CA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 K N N ? 2 O N N ? 2 V N N # _chem_comp.formula 'C24 H19 N3 O2' _chem_comp.formula_weight 381.427 _chem_comp.id Z8O _chem_comp.mon_nstd_flag . _chem_comp.name 4-{4-[2-(2,3-dihydro-1H-indol-1-yl)-2-oxoethyl]phenyl}phthalazin-1(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 Z8O sing 380 n n C7 C5 Z8O sing 381 n n C6 C5 Z8O doub 382 n y C6 C1 Z8O sing 383 n y C8 N9 Z8O sing 384 n n C5 C4 Z8O sing 385 n y C1 C2 Z8O doub 386 n y C4 N9 Z8O sing 387 n n C4 C3 Z8O doub 388 n y N9 C10 Z8O sing 389 n n C2 C3 Z8O sing 390 n y C10 O11 Z8O doub 391 n n C10 C12 Z8O sing 392 n n C12 C13 Z8O sing 393 n n C14 C15 Z8O doub 394 n y C14 C13 Z8O sing 395 n y C15 C16 Z8O sing 396 n y C13 C18 Z8O doub 397 n y C16 C17 Z8O doub 398 n y C16 C19 Z8O sing 399 n n C18 C17 Z8O sing 400 n y C19 N29 Z8O doub 401 n n C19 C20 Z8O sing 402 n n N29 N28 Z8O sing 403 n n C21 C20 Z8O doub 404 n y C21 C22 Z8O sing 405 n y C20 C25 Z8O sing 406 n y N28 C26 Z8O sing 407 n n C22 C23 Z8O doub 408 n y C25 C26 Z8O sing 409 n n C25 C24 Z8O doub 410 n y C26 O27 Z8O doub 411 n n C23 C24 Z8O sing 412 n y C6 H1 Z8O sing 413 n n C7 H2 Z8O sing 414 n n C7 H3 Z8O sing 415 n n C8 H4 Z8O sing 416 n n C8 H5 Z8O sing 417 n n C15 H6 Z8O sing 418 n n C17 H7 Z8O sing 419 n n C21 H8 Z8O sing 420 n n C22 H9 Z8O sing 421 n n C24 H10 Z8O sing 422 n n C1 H11 Z8O sing 423 n n C2 H12 Z8O sing 424 n n C3 H13 Z8O sing 425 n n C12 H14 Z8O sing 426 n n C12 H15 Z8O sing 427 n n C14 H16 Z8O sing 428 n n C18 H17 Z8O sing 429 n n C23 H18 Z8O sing 430 n n N28 H19 Z8O sing 431 n n # _atom_sites.entry_id 8GDS _atom_sites.fract_transf_matrix[1][1] 0.006989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Z8O A 1 501 4000 Z8O LIG . F 3 SO4 A 1 502 1 SO4 SO4 . G 3 SO4 A 1 503 3 SO4 SO4 . H 3 SO4 A 1 504 5 SO4 SO4 . I 3 SO4 A 1 505 7 SO4 SO4 . J 3 SO4 A 1 506 15 SO4 SO4 . K 2 Z8O B 1 501 4000 Z8O LIG . L 3 SO4 B 1 502 10 SO4 SO4 . M 3 SO4 B 1 503 12 SO4 SO4 . N 3 SO4 B 1 504 16 SO4 SO4 . O 2 Z8O C 1 501 4000 Z8O LIG . P 3 SO4 C 1 502 2 SO4 SO4 . Q 3 SO4 C 1 503 4 SO4 SO4 . R 3 SO4 C 1 504 6 SO4 SO4 . S 3 SO4 C 1 505 8 SO4 SO4 . T 3 SO4 C 1 506 14 SO4 SO4 . U 3 SO4 C 1 507 17 SO4 SO4 . V 2 Z8O D 1 501 4000 Z8O LIG . W 3 SO4 D 1 502 9 SO4 SO4 . X 3 SO4 D 1 503 11 SO4 SO4 . Y 3 SO4 D 1 504 13 SO4 SO4 . Z 4 HOH A 1 601 35 HOH HOH . Z 4 HOH A 2 602 28 HOH HOH . Z 4 HOH A 3 603 18 HOH HOH . Z 4 HOH A 4 604 36 HOH HOH . Z 4 HOH A 5 605 15 HOH HOH . Z 4 HOH A 6 606 30 HOH HOH . Z 4 HOH A 7 607 16 HOH HOH . Z 4 HOH A 8 608 25 HOH HOH . Z 4 HOH A 9 609 12 HOH HOH . Z 4 HOH A 10 610 7 HOH HOH . Z 4 HOH A 11 611 26 HOH HOH . Z 4 HOH A 12 612 43 HOH HOH . AA 4 HOH B 1 601 40 HOH HOH . AA 4 HOH B 2 602 19 HOH HOH . AA 4 HOH B 3 603 38 HOH HOH . AA 4 HOH B 4 604 27 HOH HOH . AA 4 HOH B 5 605 20 HOH HOH . AA 4 HOH B 6 606 13 HOH HOH . AA 4 HOH B 7 607 5 HOH HOH . AA 4 HOH B 8 608 29 HOH HOH . AA 4 HOH B 9 609 14 HOH HOH . AA 4 HOH B 10 610 4 HOH HOH . AA 4 HOH B 11 611 24 HOH HOH . AA 4 HOH B 12 612 41 HOH HOH . BA 4 HOH C 1 601 8 HOH HOH . BA 4 HOH C 2 602 33 HOH HOH . BA 4 HOH C 3 603 3 HOH HOH . BA 4 HOH C 4 604 37 HOH HOH . BA 4 HOH C 5 605 34 HOH HOH . BA 4 HOH C 6 606 9 HOH HOH . BA 4 HOH C 7 607 39 HOH HOH . BA 4 HOH C 8 608 32 HOH HOH . BA 4 HOH C 9 609 6 HOH HOH . BA 4 HOH C 10 610 10 HOH HOH . CA 4 HOH D 1 601 42 HOH HOH . CA 4 HOH D 2 602 17 HOH HOH . CA 4 HOH D 3 603 31 HOH HOH . CA 4 HOH D 4 604 21 HOH HOH . CA 4 HOH D 5 605 22 HOH HOH . CA 4 HOH D 6 606 11 HOH HOH . CA 4 HOH D 7 607 1 HOH HOH . CA 4 HOH D 8 608 2 HOH HOH . CA 4 HOH D 9 609 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 Z8O . . . K 2 -20.397 -22.787 6.841 1 33.21 ? C4 Z8O 501 B 1 HETATM 2 C C5 Z8O . . . K 2 -20.415 -21.652 7.65 1 33.04 ? C5 Z8O 501 B 1 HETATM 3 C C6 Z8O . . . K 2 -21.62 -21.004 7.892 1 32.63 ? C6 Z8O 501 B 1 HETATM 4 C C7 Z8O . . . K 2 -19.025 -21.335 8.133 1 33.13 ? C7 Z8O 501 B 1 HETATM 5 C C8 Z8O . . . K 2 -18.141 -22.299 7.341 1 33.32 ? C8 Z8O 501 B 1 HETATM 6 C C10 Z8O . . . K 2 -18.647 -24.461 6.219 1 34.56 ? C10 Z8O 501 B 1 HETATM 7 C C13 Z8O . . . K 2 -16.699 -25.993 5.606 1 34.29 ? C13 Z8O 501 B 1 HETATM 8 C C15 Z8O . . . K 2 -15.255 -27.924 5.661 1 34.69 ? C15 Z8O 501 B 1 HETATM 9 C C17 Z8O . . . K 2 -16.63 -27.525 3.749 1 33.93 ? C17 Z8O 501 B 1 HETATM 10 C C20 Z8O . . . K 2 -15.802 -30.673 3.328 1 34.69 ? C20 Z8O 501 B 1 HETATM 11 C C21 Z8O . . . K 2 -17.168 -30.824 3.567 1 34.68 ? C21 Z8O 501 B 1 HETATM 12 C C22 Z8O . . . K 2 -17.819 -31.972 3.157 1 34.38 ? C22 Z8O 501 B 1 HETATM 13 C C24 Z8O . . . K 2 -15.77 -32.842 2.268 1 34.17 ? C24 Z8O 501 B 1 HETATM 14 C C26 Z8O . . . K 2 -13.663 -31.534 2.412 1 33.94 ? C26 Z8O 501 B 1 HETATM 15 C C1 Z8O . . . K 2 -22.788 -21.488 7.334 1 32.58 ? C1 Z8O 501 B 1 HETATM 16 C C2 Z8O . . . K 2 -22.762 -22.618 6.533 1 32.91 ? C2 Z8O 501 B 1 HETATM 17 C C3 Z8O . . . K 2 -21.568 -23.281 6.278 1 32.99 ? C3 Z8O 501 B 1 HETATM 18 N N9 Z8O . . . K 2 -19.078 -23.267 6.723 1 33.73 ? N9 Z8O 501 B 1 HETATM 19 O O11 Z8O . . . K 2 -19.428 -25.283 5.771 1 35.1 ? O11 Z8O 501 B 1 HETATM 20 C C12 Z8O . . . K 2 -17.148 -24.702 6.257 1 34.59 ? C12 Z8O 501 B 1 HETATM 21 C C14 Z8O . . . K 2 -15.765 -26.787 6.253 1 34.69 ? C14 Z8O 501 B 1 HETATM 22 C C16 Z8O . . . K 2 -15.669 -28.301 4.396 1 34.47 ? C16 Z8O 501 B 1 HETATM 23 C C18 Z8O . . . K 2 -17.136 -26.386 4.349 1 33.97 ? C18 Z8O 501 B 1 HETATM 24 C C19 Z8O . . . K 2 -15.044 -29.477 3.727 1 34.57 ? C19 Z8O 501 B 1 HETATM 25 C C23 Z8O . . . K 2 -17.125 -32.972 2.513 1 34.23 ? C23 Z8O 501 B 1 HETATM 26 C C25 Z8O . . . K 2 -15.1 -31.693 2.671 1 34.23 ? C25 Z8O 501 B 1 HETATM 27 O O27 Z8O . . . K 2 -12.97 -32.361 1.828 1 33.94 ? O27 Z8O 501 B 1 HETATM 28 N N28 Z8O . . . K 2 -13.125 -30.387 2.85 1 33.84 ? N28 Z8O 501 B 1 HETATM 29 N N29 Z8O . . . K 2 -13.768 -29.36 3.497 1 34 ? N29 Z8O 501 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #