data_8GDS # _model_server_result.job_id THleMmusLiu7P_H8O1l5Mw _model_server_result.datetime_utc '2024-11-23 05:19:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":501}' # _entry.id 8GDS # _exptl.entry_id 8GDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{4-[2-(2,3-dihydro-1H-indol-1-yl)-2-oxoethyl]phenyl}phthalazin-1(2H)-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GDS _cell.length_a 143.084 _cell.length_b 143.329 _cell.length_c 134.363 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,Z 1 1 B,K,L,M,N,AA 2 1 C,O,P,Q,R,S,T,U,BA 3 1 D,V,W,X,Y,CA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 K N N ? 2 O N N ? 2 V N N # _chem_comp.formula 'C24 H19 N3 O2' _chem_comp.formula_weight 381.427 _chem_comp.id Z8O _chem_comp.mon_nstd_flag . _chem_comp.name 4-{4-[2-(2,3-dihydro-1H-indol-1-yl)-2-oxoethyl]phenyl}phthalazin-1(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 Z8O sing 380 n n C7 C5 Z8O sing 381 n n C6 C5 Z8O doub 382 n y C6 C1 Z8O sing 383 n y C8 N9 Z8O sing 384 n n C5 C4 Z8O sing 385 n y C1 C2 Z8O doub 386 n y C4 N9 Z8O sing 387 n n C4 C3 Z8O doub 388 n y N9 C10 Z8O sing 389 n n C2 C3 Z8O sing 390 n y C10 O11 Z8O doub 391 n n C10 C12 Z8O sing 392 n n C12 C13 Z8O sing 393 n n C14 C15 Z8O doub 394 n y C14 C13 Z8O sing 395 n y C15 C16 Z8O sing 396 n y C13 C18 Z8O doub 397 n y C16 C17 Z8O doub 398 n y C16 C19 Z8O sing 399 n n C18 C17 Z8O sing 400 n y C19 N29 Z8O doub 401 n n C19 C20 Z8O sing 402 n n N29 N28 Z8O sing 403 n n C21 C20 Z8O doub 404 n y C21 C22 Z8O sing 405 n y C20 C25 Z8O sing 406 n y N28 C26 Z8O sing 407 n n C22 C23 Z8O doub 408 n y C25 C26 Z8O sing 409 n n C25 C24 Z8O doub 410 n y C26 O27 Z8O doub 411 n n C23 C24 Z8O sing 412 n y C6 H1 Z8O sing 413 n n C7 H2 Z8O sing 414 n n C7 H3 Z8O sing 415 n n C8 H4 Z8O sing 416 n n C8 H5 Z8O sing 417 n n C15 H6 Z8O sing 418 n n C17 H7 Z8O sing 419 n n C21 H8 Z8O sing 420 n n C22 H9 Z8O sing 421 n n C24 H10 Z8O sing 422 n n C1 H11 Z8O sing 423 n n C2 H12 Z8O sing 424 n n C3 H13 Z8O sing 425 n n C12 H14 Z8O sing 426 n n C12 H15 Z8O sing 427 n n C14 H16 Z8O sing 428 n n C18 H17 Z8O sing 429 n n C23 H18 Z8O sing 430 n n N28 H19 Z8O sing 431 n n # _atom_sites.entry_id 8GDS _atom_sites.fract_transf_matrix[1][1] 0.006989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Z8O A 1 501 4000 Z8O LIG . F 3 SO4 A 1 502 1 SO4 SO4 . G 3 SO4 A 1 503 3 SO4 SO4 . H 3 SO4 A 1 504 5 SO4 SO4 . I 3 SO4 A 1 505 7 SO4 SO4 . J 3 SO4 A 1 506 15 SO4 SO4 . K 2 Z8O B 1 501 4000 Z8O LIG . L 3 SO4 B 1 502 10 SO4 SO4 . M 3 SO4 B 1 503 12 SO4 SO4 . N 3 SO4 B 1 504 16 SO4 SO4 . O 2 Z8O C 1 501 4000 Z8O LIG . P 3 SO4 C 1 502 2 SO4 SO4 . Q 3 SO4 C 1 503 4 SO4 SO4 . R 3 SO4 C 1 504 6 SO4 SO4 . S 3 SO4 C 1 505 8 SO4 SO4 . T 3 SO4 C 1 506 14 SO4 SO4 . U 3 SO4 C 1 507 17 SO4 SO4 . V 2 Z8O D 1 501 4000 Z8O LIG . W 3 SO4 D 1 502 9 SO4 SO4 . X 3 SO4 D 1 503 11 SO4 SO4 . Y 3 SO4 D 1 504 13 SO4 SO4 . Z 4 HOH A 1 601 35 HOH HOH . Z 4 HOH A 2 602 28 HOH HOH . Z 4 HOH A 3 603 18 HOH HOH . Z 4 HOH A 4 604 36 HOH HOH . Z 4 HOH A 5 605 15 HOH HOH . Z 4 HOH A 6 606 30 HOH HOH . Z 4 HOH A 7 607 16 HOH HOH . Z 4 HOH A 8 608 25 HOH HOH . Z 4 HOH A 9 609 12 HOH HOH . Z 4 HOH A 10 610 7 HOH HOH . Z 4 HOH A 11 611 26 HOH HOH . Z 4 HOH A 12 612 43 HOH HOH . AA 4 HOH B 1 601 40 HOH HOH . AA 4 HOH B 2 602 19 HOH HOH . AA 4 HOH B 3 603 38 HOH HOH . AA 4 HOH B 4 604 27 HOH HOH . AA 4 HOH B 5 605 20 HOH HOH . AA 4 HOH B 6 606 13 HOH HOH . AA 4 HOH B 7 607 5 HOH HOH . AA 4 HOH B 8 608 29 HOH HOH . AA 4 HOH B 9 609 14 HOH HOH . AA 4 HOH B 10 610 4 HOH HOH . AA 4 HOH B 11 611 24 HOH HOH . AA 4 HOH B 12 612 41 HOH HOH . BA 4 HOH C 1 601 8 HOH HOH . BA 4 HOH C 2 602 33 HOH HOH . BA 4 HOH C 3 603 3 HOH HOH . BA 4 HOH C 4 604 37 HOH HOH . BA 4 HOH C 5 605 34 HOH HOH . BA 4 HOH C 6 606 9 HOH HOH . BA 4 HOH C 7 607 39 HOH HOH . BA 4 HOH C 8 608 32 HOH HOH . BA 4 HOH C 9 609 6 HOH HOH . BA 4 HOH C 10 610 10 HOH HOH . CA 4 HOH D 1 601 42 HOH HOH . CA 4 HOH D 2 602 17 HOH HOH . CA 4 HOH D 3 603 31 HOH HOH . CA 4 HOH D 4 604 21 HOH HOH . CA 4 HOH D 5 605 22 HOH HOH . CA 4 HOH D 6 606 11 HOH HOH . CA 4 HOH D 7 607 1 HOH HOH . CA 4 HOH D 8 608 2 HOH HOH . CA 4 HOH D 9 609 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 Z8O . . . V 2 27.018 13.885 -75.761 1 30.8 ? C4 Z8O 501 D 1 HETATM 2 C C5 Z8O . . . V 2 25.907 14.116 -76.582 1 29.91 ? C5 Z8O 501 D 1 HETATM 3 C C6 Z8O . . . V 2 25.506 15.422 -76.838 1 29.33 ? C6 Z8O 501 D 1 HETATM 4 C C7 Z8O . . . V 2 25.34 12.807 -77.057 1 29.53 ? C7 Z8O 501 D 1 HETATM 5 C C8 Z8O . . . V 2 26.053 11.781 -76.177 1 30.58 ? C8 Z8O 501 D 1 HETATM 6 C C10 Z8O . . . V 2 28.238 11.855 -74.969 1 33.6 ? C10 Z8O 501 D 1 HETATM 7 C C13 Z8O . . . V 2 29.403 9.662 -74.367 1 36.33 ? C13 Z8O 501 D 1 HETATM 8 C C15 Z8O . . . V 2 30.978 7.843 -74.227 1 37.45 ? C15 Z8O 501 D 1 HETATM 9 C C17 Z8O . . . V 2 30.759 9.355 -72.389 1 37.25 ? C17 Z8O 501 D 1 HETATM 10 C C20 Z8O . . . V 2 33.663 7.919 -71.785 1 40.79 ? C20 Z8O 501 D 1 HETATM 11 C C21 Z8O . . . V 2 34.092 9.219 -72.047 1 40.65 ? C21 Z8O 501 D 1 HETATM 12 C C22 Z8O . . . V 2 35.351 9.631 -71.635 1 40.86 ? C22 Z8O 501 D 1 HETATM 13 C C24 Z8O . . . V 2 35.777 7.467 -70.692 1 41.2 ? C24 Z8O 501 D 1 HETATM 14 C C26 Z8O . . . V 2 34.067 5.662 -70.831 1 41.8 ? C26 Z8O 501 D 1 HETATM 15 C C1 Z8O . . . V 2 26.21 16.477 -76.283 1 29.4 ? C1 Z8O 501 D 1 HETATM 16 C C2 Z8O . . . V 2 27.316 16.238 -75.473 1 29.74 ? C2 Z8O 501 D 1 HETATM 17 C C3 Z8O . . . V 2 27.732 14.942 -75.202 1 30.07 ? C3 Z8O 501 D 1 HETATM 18 N N9 Z8O . . . V 2 27.227 12.503 -75.624 1 31.8 ? N9 Z8O 501 D 1 HETATM 19 O O11 Z8O . . . V 2 29.046 12.458 -74.288 1 33.92 ? O11 Z8O 501 D 1 HETATM 20 C C12 Z8O . . . V 2 28.293 10.346 -75.142 1 35.23 ? C12 Z8O 501 D 1 HETATM 21 C C14 Z8O . . . V 2 30.021 8.551 -74.922 1 36.88 ? C14 Z8O 501 D 1 HETATM 22 C C16 Z8O . . . V 2 31.355 8.227 -72.948 1 38.35 ? C16 Z8O 501 D 1 HETATM 23 C C18 Z8O . . . V 2 29.796 10.062 -73.093 1 36.74 ? C18 Z8O 501 D 1 HETATM 24 C C19 Z8O . . . V 2 32.348 7.408 -72.2 1 40.28 ? C19 Z8O 501 D 1 HETATM 25 C C23 Z8O . . . V 2 36.188 8.761 -70.961 1 41.06 ? C23 Z8O 501 D 1 HETATM 26 C C25 Z8O . . . V 2 34.515 7.037 -71.101 1 41.35 ? C25 Z8O 501 D 1 HETATM 27 O O27 Z8O . . . V 2 34.74 4.823 -70.239 1 42.52 ? O27 Z8O 501 D 1 HETATM 28 N N28 Z8O . . . V 2 32.837 5.358 -71.278 1 41.35 ? N28 Z8O 501 D 1 HETATM 29 N N29 Z8O . . . V 2 31.971 6.186 -71.949 1 41.12 ? N29 Z8O 501 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #