data_8GDY
#
_model_server_result.job_id            uMh5IB-bgG9z4EE3sC50Qw 
_model_server_result.datetime_utc      '2024-11-05 05:07:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    8GDY 
#
_exptl.entry_id    8GDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GDY 
_cell.length_a            58.706 
_cell.length_b            61.303 
_cell.length_c            68.561 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8GDY 
_atom_sites.fract_transf_matrix[1][1]    0.017034 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016312 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014586 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SCN A 1 201 201 SCN SCN . 
D 3 EDO A 1 202 202 EDO EDO . 
E 2 SCN B 1 201 201 SCN SCN . 
F 4 HOH A 1 301 102 HOH HOH . 
F 4 HOH A 2 302 12 HOH HOH . 
F 4 HOH A 3 303 109 HOH HOH . 
F 4 HOH A 4 304 97 HOH HOH . 
F 4 HOH A 5 305 21 HOH HOH . 
F 4 HOH A 6 306 61 HOH HOH . 
F 4 HOH A 7 307 19 HOH HOH . 
F 4 HOH A 8 308 42 HOH HOH . 
F 4 HOH A 9 309 34 HOH HOH . 
F 4 HOH A 10 310 24 HOH HOH . 
F 4 HOH A 11 311 32 HOH HOH . 
F 4 HOH A 12 312 20 HOH HOH . 
F 4 HOH A 13 313 9 HOH HOH . 
F 4 HOH A 14 314 17 HOH HOH . 
F 4 HOH A 15 315 26 HOH HOH . 
F 4 HOH A 16 316 62 HOH HOH . 
F 4 HOH A 17 317 50 HOH HOH . 
F 4 HOH A 18 318 1 HOH HOH . 
F 4 HOH A 19 319 122 HOH HOH . 
F 4 HOH A 20 320 98 HOH HOH . 
F 4 HOH A 21 321 27 HOH HOH . 
F 4 HOH A 22 322 33 HOH HOH . 
F 4 HOH A 23 323 23 HOH HOH . 
F 4 HOH A 24 324 31 HOH HOH . 
F 4 HOH A 25 325 41 HOH HOH . 
F 4 HOH A 26 326 92 HOH HOH . 
F 4 HOH A 27 327 74 HOH HOH . 
F 4 HOH A 28 328 16 HOH HOH . 
F 4 HOH A 29 329 14 HOH HOH . 
F 4 HOH A 30 330 29 HOH HOH . 
F 4 HOH A 31 331 111 HOH HOH . 
F 4 HOH A 32 332 5 HOH HOH . 
F 4 HOH A 33 333 22 HOH HOH . 
F 4 HOH A 34 334 7 HOH HOH . 
F 4 HOH A 35 335 43 HOH HOH . 
F 4 HOH A 36 336 108 HOH HOH . 
F 4 HOH A 37 337 49 HOH HOH . 
F 4 HOH A 38 338 95 HOH HOH . 
F 4 HOH A 39 339 105 HOH HOH . 
F 4 HOH A 40 340 89 HOH HOH . 
F 4 HOH A 41 341 135 HOH HOH . 
F 4 HOH A 42 342 44 HOH HOH . 
F 4 HOH A 43 343 53 HOH HOH . 
F 4 HOH A 44 344 8 HOH HOH . 
F 4 HOH A 45 345 68 HOH HOH . 
F 4 HOH A 46 346 128 HOH HOH . 
F 4 HOH A 47 347 106 HOH HOH . 
F 4 HOH A 48 348 136 HOH HOH . 
F 4 HOH A 49 349 123 HOH HOH . 
F 4 HOH A 50 350 59 HOH HOH . 
F 4 HOH A 51 351 54 HOH HOH . 
F 4 HOH A 52 352 66 HOH HOH . 
F 4 HOH A 53 353 80 HOH HOH . 
F 4 HOH A 54 354 88 HOH HOH . 
F 4 HOH A 55 355 76 HOH HOH . 
F 4 HOH A 56 356 101 HOH HOH . 
F 4 HOH A 57 357 73 HOH HOH . 
F 4 HOH A 58 358 129 HOH HOH . 
F 4 HOH A 59 359 110 HOH HOH . 
F 4 HOH A 60 360 65 HOH HOH . 
F 4 HOH A 61 361 81 HOH HOH . 
F 4 HOH A 62 362 78 HOH HOH . 
F 4 HOH A 63 363 137 HOH HOH . 
F 4 HOH A 64 364 79 HOH HOH . 
F 4 HOH A 65 365 82 HOH HOH . 
F 4 HOH A 66 366 60 HOH HOH . 
F 4 HOH A 67 367 119 HOH HOH . 
F 4 HOH A 68 368 116 HOH HOH . 
F 4 HOH A 69 369 87 HOH HOH . 
F 4 HOH A 70 370 126 HOH HOH . 
F 4 HOH A 71 371 134 HOH HOH . 
F 4 HOH A 72 372 130 HOH HOH . 
F 4 HOH A 73 373 132 HOH HOH . 
F 4 HOH A 74 374 138 HOH HOH . 
F 4 HOH A 75 375 143 HOH HOH . 
F 4 HOH A 76 376 112 HOH HOH . 
F 4 HOH A 77 377 85 HOH HOH . 
G 4 HOH B 1 301 91 HOH HOH . 
G 4 HOH B 2 302 115 HOH HOH . 
G 4 HOH B 3 303 77 HOH HOH . 
G 4 HOH B 4 304 114 HOH HOH . 
G 4 HOH B 5 305 94 HOH HOH . 
G 4 HOH B 6 306 107 HOH HOH . 
G 4 HOH B 7 307 70 HOH HOH . 
G 4 HOH B 8 308 63 HOH HOH . 
G 4 HOH B 9 309 6 HOH HOH . 
G 4 HOH B 10 310 45 HOH HOH . 
G 4 HOH B 11 311 28 HOH HOH . 
G 4 HOH B 12 312 11 HOH HOH . 
G 4 HOH B 13 313 2 HOH HOH . 
G 4 HOH B 14 314 71 HOH HOH . 
G 4 HOH B 15 315 55 HOH HOH . 
G 4 HOH B 16 316 120 HOH HOH . 
G 4 HOH B 17 317 58 HOH HOH . 
G 4 HOH B 18 318 10 HOH HOH . 
G 4 HOH B 19 319 52 HOH HOH . 
G 4 HOH B 20 320 40 HOH HOH . 
G 4 HOH B 21 321 75 HOH HOH . 
G 4 HOH B 22 322 38 HOH HOH . 
G 4 HOH B 23 323 51 HOH HOH . 
G 4 HOH B 24 324 13 HOH HOH . 
G 4 HOH B 25 325 25 HOH HOH . 
G 4 HOH B 26 326 64 HOH HOH . 
G 4 HOH B 27 327 90 HOH HOH . 
G 4 HOH B 28 328 36 HOH HOH . 
G 4 HOH B 29 329 46 HOH HOH . 
G 4 HOH B 30 330 3 HOH HOH . 
G 4 HOH B 31 331 30 HOH HOH . 
G 4 HOH B 32 332 127 HOH HOH . 
G 4 HOH B 33 333 39 HOH HOH . 
G 4 HOH B 34 334 47 HOH HOH . 
G 4 HOH B 35 335 15 HOH HOH . 
G 4 HOH B 36 336 96 HOH HOH . 
G 4 HOH B 37 337 124 HOH HOH . 
G 4 HOH B 38 338 100 HOH HOH . 
G 4 HOH B 39 339 69 HOH HOH . 
G 4 HOH B 40 340 139 HOH HOH . 
G 4 HOH B 41 341 84 HOH HOH . 
G 4 HOH B 42 342 4 HOH HOH . 
G 4 HOH B 43 343 37 HOH HOH . 
G 4 HOH B 44 344 99 HOH HOH . 
G 4 HOH B 45 345 142 HOH HOH . 
G 4 HOH B 46 346 67 HOH HOH . 
G 4 HOH B 47 347 57 HOH HOH . 
G 4 HOH B 48 348 86 HOH HOH . 
G 4 HOH B 49 349 133 HOH HOH . 
G 4 HOH B 50 350 103 HOH HOH . 
G 4 HOH B 51 351 35 HOH HOH . 
G 4 HOH B 52 352 117 HOH HOH . 
G 4 HOH B 53 353 56 HOH HOH . 
G 4 HOH B 54 354 18 HOH HOH . 
G 4 HOH B 55 355 118 HOH HOH . 
G 4 HOH B 56 356 93 HOH HOH . 
G 4 HOH B 57 357 48 HOH HOH . 
G 4 HOH B 58 358 72 HOH HOH . 
G 4 HOH B 59 359 131 HOH HOH . 
G 4 HOH B 60 360 141 HOH HOH . 
G 4 HOH B 61 361 83 HOH HOH . 
G 4 HOH B 62 362 104 HOH HOH . 
G 4 HOH B 63 363 140 HOH HOH . 
G 4 HOH B 64 364 113 HOH HOH . 
G 4 HOH B 65 365 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -30.042 -17.885 -4.758 1 40 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . D 3 -30.887 -18.263 -5.853 1 37.71 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . D 3 -30.436 -16.525 -4.168 1 35.42 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . D 3 -30.299 -16.531 -2.746 1 40.6 ? O2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#