data_8GEB # _model_server_result.job_id hNyre0h25543P0vFA699bw _model_server_result.datetime_utc '2024-12-29 00:48:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8geb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8GEB # _exptl.entry_id 8GEB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 209.242 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R,6R)-6-(methylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GEB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 137 _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 106 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 222 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 191 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.027 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H15 N O3' _chem_comp.formula_weight 209.242 _chem_comp.id G1I _chem_comp.mon_nstd_flag . _chem_comp.name (5R,6R)-6-(methylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO NAN G1I sing 83 n n CAH CAG G1I sing 84 n n CAH CAI G1I sing 85 n n NAN CAI G1I sing 86 n n CAG CAE G1I sing 87 n n CAI CAJ G1I sing 88 n n OAK CAD G1I sing 89 n n CAE CAD G1I doub 90 n y CAE CAF G1I sing 91 n y CAJ CAF G1I sing 92 n n CAJ OAM G1I sing 93 n n CAD CAC G1I sing 94 n y CAF CAA G1I doub 95 n y CAC OAL G1I sing 96 n n CAC CAB G1I doub 97 n y CAA CAB G1I sing 98 n y CAA H1 G1I sing 99 n n CAB H2 G1I sing 100 n n CAG H3 G1I sing 101 n n CAG H4 G1I sing 102 n n CAH H5 G1I sing 103 n n CAH H6 G1I sing 104 n n CAI H7 G1I sing 105 n n CAJ H8 G1I sing 106 n n CAO H9 G1I sing 107 n n CAO H10 G1I sing 108 n n CAO H11 G1I sing 109 n n NAN H12 G1I sing 110 n n OAK H14 G1I sing 111 n n OAL H15 G1I sing 112 n n OAM H16 G1I sing 113 n n # _atom_sites.entry_id 8GEB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id G1I _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 0 _pdbx_nonpoly_scheme.pdb_mon_id G1I _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA G1I . . . E 5 160.491 159.861 128.416 1 40.52 ? CAA G1I 501 R 1 HETATM 2 C CAB G1I . . . E 5 161.428 159.001 128.958 1 40.52 ? CAB G1I 501 R 1 HETATM 3 C CAC G1I . . . E 5 162.481 158.481 128.19 1 40.52 ? CAC G1I 501 R 1 HETATM 4 C CAD G1I . . . E 5 162.541 158.886 126.8 1 40.52 ? CAD G1I 501 R 1 HETATM 5 C CAE G1I . . . E 5 161.552 159.784 126.26 1 40.52 ? CAE G1I 501 R 1 HETATM 6 C CAF G1I . . . E 5 160.518 160.275 127.069 1 40.52 ? CAF G1I 501 R 1 HETATM 7 C CAG G1I . . . E 5 161.618 160.207 124.796 1 40.52 ? CAG G1I 501 R 1 HETATM 8 C CAH G1I . . . E 5 161.024 161.603 124.415 1 40.52 ? CAH G1I 501 R 1 HETATM 9 C CAI G1I . . . E 5 160.116 162.292 125.463 1 40.52 ? CAI G1I 501 R 1 HETATM 10 C CAJ G1I . . . E 5 159.479 161.239 126.446 1 40.52 ? CAJ G1I 501 R 1 HETATM 11 C CAO G1I . . . E 5 159.076 164.548 125.21 1 40.52 ? CAO G1I 501 R 1 HETATM 12 N NAN G1I . . . E 5 159.089 163.132 124.803 1 40.52 ? NAN G1I 501 R 1 HETATM 13 O OAK G1I . . . E 5 163.512 158.423 126.031 1 40.52 ? OAK G1I 501 R 1 HETATM 14 O OAL G1I . . . E 5 163.41 157.65 128.661 1 40.52 ? OAL G1I 501 R 1 HETATM 15 O OAM G1I . . . E 5 158.84 161.959 127.45 1 40.52 ? OAM G1I 501 R 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #