data_8GEN # _model_server_result.job_id l-H7aepIW9DU6TE3cfklwA _model_server_result.datetime_utc '2024-11-25 01:51:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gen # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8GEN # _exptl.entry_id 8GEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 587.648 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "8-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5-(morpholin-4-yl)-1,2,3,4-tetrahydro[1,2,3]triazino[4',5':4,5]thieno[2,3 -c]isoquinoline" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GEN _cell.length_a 180.304 _cell.length_b 180.304 _cell.length_c 133.566 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 90.152 -156.147844 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.522 4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 90.152 -156.147844 -44.522 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H33 N7 O7 S' _chem_comp.formula_weight 587.648 _chem_comp.id I9G _chem_comp.mon_nstd_flag . _chem_comp.name "8-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5-(morpholin-4-yl)-1,2,3,4-tetrahydro[1,2,3]triazino[4',5':4,5]thieno[2,3 -c]isoquinoline" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'UNC10201652-glucuronic acid conjugate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 O39 I9G sing 150 n n C38 C37 I9G sing 151 n n O39 C40 I9G sing 152 n n C31 C30 I9G sing 153 n n C31 C32 I9G sing 154 n n C30 C29 I9G sing 155 n n C40 C41 I9G sing 156 n n C37 N36 I9G sing 157 n n C32 C33 I9G sing 158 n n N36 C41 I9G sing 159 n n N36 C34 I9G sing 160 n n C29 C34 I9G doub 161 n y C29 C28 I9G sing 162 n y C34 N35 I9G sing 163 n y C33 C28 I9G sing 164 n n C28 C27 I9G doub 165 n y N35 C26 I9G doub 166 n y C27 C26 I9G sing 167 n y C27 C23 I9G sing 168 n y C26 S25 I9G sing 169 n y C23 N22 I9G doub 170 n y C23 C24 I9G sing 171 n y N22 N21 I9G sing 172 n y S25 C24 I9G sing 173 n y N21 N20 I9G doub 174 n y C24 C19 I9G doub 175 n y N20 C19 I9G sing 176 n y C19 N16 I9G sing 177 n n O11 C10 I9G doub 178 n n O12 C10 I9G sing 179 n n C10 C07 I9G sing 180 n n N16 C15 I9G sing 181 n n N16 C17 I9G sing 182 n n C15 C14 I9G sing 183 n n C14 N13 I9G sing 184 n n O06 C07 I9G sing 185 n n O06 C05 I9G sing 186 n n C07 C08 I9G sing 187 n n C17 C18 I9G sing 188 n n C18 N13 I9G sing 189 n n N13 C05 I9G sing 190 n n C05 C03 I9G sing 191 n n C08 O09 I9G sing 192 n n C08 C02 I9G sing 193 n n C03 C02 I9G sing 194 n n C03 O04 I9G sing 195 n n C02 O01 I9G sing 196 n n C02 H1 I9G sing 197 n n C03 H2 I9G sing 198 n n C05 H3 I9G sing 199 n n C07 H4 I9G sing 200 n n C08 H5 I9G sing 201 n n C14 H6 I9G sing 202 n n C14 H7 I9G sing 203 n n C15 H8 I9G sing 204 n n C15 H9 I9G sing 205 n n C17 H10 I9G sing 206 n n C17 H11 I9G sing 207 n n C18 H12 I9G sing 208 n n C18 H13 I9G sing 209 n n C30 H14 I9G sing 210 n n C30 H15 I9G sing 211 n n C31 H16 I9G sing 212 n n C31 H17 I9G sing 213 n n C32 H18 I9G sing 214 n n C32 H19 I9G sing 215 n n C33 H20 I9G sing 216 n n C33 H21 I9G sing 217 n n C37 H22 I9G sing 218 n n C37 H23 I9G sing 219 n n C38 H24 I9G sing 220 n n C38 H25 I9G sing 221 n n C40 H26 I9G sing 222 n n C40 H27 I9G sing 223 n n C41 H28 I9G sing 224 n n C41 H29 I9G sing 225 n n O01 H31 I9G sing 226 n n O04 H32 I9G sing 227 n n O09 H33 I9G sing 228 n n O12 H34 I9G sing 229 n n # _atom_sites.entry_id 8GEN _atom_sites.fract_transf_matrix[1][1] 0.005546 _atom_sites.fract_transf_matrix[1][2] 0.003202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id I9G _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 716 _pdbx_nonpoly_scheme.pdb_mon_id I9G _pdbx_nonpoly_scheme.auth_mon_id I9G _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 I9G . . . B 2 23.595 -81.08 -9.313 0.93 56.26 ? C02 I9G 701 A 1 HETATM 2 C C03 I9G . . . B 2 22.145 -81.184 -9.465 0.93 56.08 ? C03 I9G 701 A 1 HETATM 3 C C05 I9G . . . B 2 21.608 -80.936 -10.909 0.93 59.11 ? C05 I9G 701 A 1 HETATM 4 C C07 I9G . . . B 2 24.024 -80.847 -11.733 0.93 55.39 ? C07 I9G 701 A 1 HETATM 5 C C08 I9G . . . B 2 24.317 -81.683 -10.482 0.93 53.55 ? C08 I9G 701 A 1 HETATM 6 C C10 I9G . . . B 2 24.716 -81.488 -12.872 0.93 58.63 ? C10 I9G 701 A 1 HETATM 7 C C14 I9G . . . B 2 21.46 -83.148 -11.429 0.93 68.53 ? C14 I9G 701 A 1 HETATM 8 C C15 I9G . . . B 2 20.391 -84.236 -11.459 0.93 63.58 ? C15 I9G 701 A 1 HETATM 9 C C17 I9G . . . B 2 18.958 -82.703 -12.422 0.93 67.61 ? C17 I9G 701 A 1 HETATM 10 C C18 I9G . . . B 2 20.074 -81.665 -12.33 0.93 61.93 ? C18 I9G 701 A 1 HETATM 11 C C19 I9G . . . B 2 19.935 -84.505 -13.935 0.93 72.42 ? C19 I9G 701 A 1 HETATM 12 C C23 I9G . . . B 2 19.514 -84.795 -16.329 0.93 71.27 ? C23 I9G 701 A 1 HETATM 13 C C24 I9G . . . B 2 19.045 -84.329 -15.073 0.93 73.48 ? C24 I9G 701 A 1 HETATM 14 C C26 I9G . . . B 2 17.363 -83.956 -17.032 0.93 88.73 ? C26 I9G 701 A 1 HETATM 15 C C27 I9G . . . B 2 18.538 -84.572 -17.433 0.93 78.35 ? C27 I9G 701 A 1 HETATM 16 C C28 I9G . . . B 2 18.708 -84.931 -18.829 0.93 76.73 ? C28 I9G 701 A 1 HETATM 17 C C29 I9G . . . B 2 17.697 -84.648 -19.71 0.93 83.09 ? C29 I9G 701 A 1 HETATM 18 C C30 I9G . . . B 2 17.833 -85.014 -21.203 0.93 77.22 ? C30 I9G 701 A 1 HETATM 19 C C31 I9G . . . B 2 18.84 -86.155 -21.408 0.93 74.69 ? C31 I9G 701 A 1 HETATM 20 C C32 I9G . . . B 2 20.168 -85.807 -20.734 0.93 83.71 ? C32 I9G 701 A 1 HETATM 21 C C33 I9G . . . B 2 20.011 -85.612 -19.238 0.93 79.39 ? C33 I9G 701 A 1 HETATM 22 C C34 I9G . . . B 2 16.51 -84 -19.202 0.93 98.6 ? C34 I9G 701 A 1 HETATM 23 C C37 I9G . . . B 2 15.509 -82.849 -21.258 0.93 107.03 ? C37 I9G 701 A 1 HETATM 24 C C38 I9G . . . B 2 15.648 -81.372 -20.941 0.93 99.64 ? C38 I9G 701 A 1 HETATM 25 C C40 I9G . . . B 2 14.428 -81.622 -19.024 0.93 103.95 ? C40 I9G 701 A 1 HETATM 26 C C41 I9G . . . B 2 14.191 -83.081 -19.402 0.93 122.39 ? C41 I9G 701 A 1 HETATM 27 N N13 I9G . . . B 2 20.838 -81.946 -11.237 0.93 63.24 ? N13 I9G 701 A 1 HETATM 28 N N16 I9G . . . B 2 19.495 -84.035 -12.575 0.93 65.1 ? N16 I9G 701 A 1 HETATM 29 N N20 I9G . . . B 2 21.116 -85.08 -14.113 0.93 82.45 ? N20 I9G 701 A 1 HETATM 30 N N21 I9G . . . B 2 21.505 -85.503 -15.328 0.93 73.97 ? N21 I9G 701 A 1 HETATM 31 N N22 I9G . . . B 2 20.737 -85.37 -16.403 0.93 69.5 ? N22 I9G 701 A 1 HETATM 32 N N35 I9G . . . B 2 16.395 -83.693 -17.914 0.93 102.15 ? N35 I9G 701 A 1 HETATM 33 N N36 I9G . . . B 2 15.36 -83.661 -20.056 0.93 111.96 ? N36 I9G 701 A 1 HETATM 34 O O01 I9G . . . B 2 23.984 -81.823 -8.143 0.93 63.64 ? O01 I9G 701 A 1 HETATM 35 O O04 I9G . . . B 2 21.543 -80.207 -8.617 0.93 63.78 ? O04 I9G 701 A 1 HETATM 36 O O06 I9G . . . B 2 22.613 -80.79 -12.055 0.93 59.55 ? O06 I9G 701 A 1 HETATM 37 O O09 I9G . . . B 2 25.693 -81.662 -10.229 0.93 58.65 ? O09 I9G 701 A 1 HETATM 38 O O11 I9G . . . B 2 24.141 -82.411 -13.507 0.93 63.23 ? O11 I9G 701 A 1 HETATM 39 O O12 I9G . . . B 2 25.866 -81.11 -13.193 0.93 61.58 ? O12 I9G 701 A 1 HETATM 40 O O39 I9G . . . B 2 14.642 -80.853 -20.149 0.93 103.31 ? O39 I9G 701 A 1 HETATM 41 S S25 I9G . . . B 2 17.491 -83.672 -15.316 0.93 87.43 ? S25 I9G 701 A 1 HETATM 42 H H1 I9G . . . B 2 23.849 -80.148 -9.222 0.93 68.21 ? H1 I9G 701 A 1 HETATM 43 H H2 I9G . . . B 2 21.866 -82.054 -9.148 0.93 67.99 ? H2 I9G 701 A 1 HETATM 44 H H3 I9G . . . B 2 21.07 -80.133 -10.88 0.93 71.62 ? H3 I9G 701 A 1 HETATM 45 H H4 I9G . . . B 2 24.355 -79.95 -11.604 0.93 67.15 ? H4 I9G 701 A 1 HETATM 46 H H5 I9G . . . B 2 24.025 -82.594 -10.62 0.93 64.94 ? H5 I9G 701 A 1 HETATM 47 H H6 I9G . . . B 2 22.079 -83.353 -10.718 0.93 82.92 ? H6 I9G 701 A 1 HETATM 48 H H7 I9G . . . B 2 21.93 -83.147 -12.275 0.93 82.92 ? H7 I9G 701 A 1 HETATM 49 H H8 I9G . . . B 2 20.817 -85.102 -11.537 0.93 76.99 ? H8 I9G 701 A 1 HETATM 50 H H9 I9G . . . B 2 19.882 -84.194 -10.636 0.93 76.99 ? H9 I9G 701 A 1 HETATM 51 H H10 I9G . . . B 2 18.393 -82.481 -13.172 0.93 81.82 ? H10 I9G 701 A 1 HETATM 52 H H11 I9G . . . B 2 18.436 -82.676 -11.609 0.93 81.82 ? H11 I9G 701 A 1 HETATM 53 H H12 I9G . . . B 2 20.613 -81.724 -13.133 0.93 75 ? H12 I9G 701 A 1 HETATM 54 H H13 I9G . . . B 2 19.69 -80.78 -12.265 0.93 75 ? H13 I9G 701 A 1 HETATM 55 H H14 I9G . . . B 2 18.148 -84.234 -21.685 0.93 93.35 ? H14 I9G 701 A 1 HETATM 56 H H15 I9G . . . B 2 16.969 -85.286 -21.547 0.93 93.35 ? H15 I9G 701 A 1 HETATM 57 H H16 I9G . . . B 2 18.487 -86.964 -21.008 0.93 90.32 ? H16 I9G 701 A 1 HETATM 58 H H17 I9G . . . B 2 18.986 -86.288 -22.356 0.93 90.32 ? H17 I9G 701 A 1 HETATM 59 H H18 I9G . . . B 2 20.501 -84.983 -21.118 0.93 101.14 ? H18 I9G 701 A 1 HETATM 60 H H19 I9G . . . B 2 20.802 -86.522 -20.895 0.93 101.14 ? H19 I9G 701 A 1 HETATM 61 H H20 I9G . . . B 2 20.05 -86.479 -18.808 0.93 95.96 ? H20 I9G 701 A 1 HETATM 62 H H21 I9G . . . B 2 20.751 -85.072 -18.925 0.93 95.96 ? H21 I9G 701 A 1 HETATM 63 H H22 I9G . . . B 2 14.725 -82.971 -21.814 0.93 129.13 ? H22 I9G 701 A 1 HETATM 64 H H23 I9G . . . B 2 16.291 -83.121 -21.752 0.93 129.13 ? H23 I9G 701 A 1 HETATM 65 H H24 I9G . . . B 2 16.5 -81.222 -20.505 0.93 120.26 ? H24 I9G 701 A 1 HETATM 66 H H25 I9G . . . B 2 15.624 -80.922 -21.79 0.93 120.26 ? H25 I9G 701 A 1 HETATM 67 H H26 I9G . . . B 2 13.65 -81.286 -18.554 0.93 125.43 ? H26 I9G 701 A 1 HETATM 68 H H27 I9G . . . B 2 15.206 -81.556 -18.451 0.93 125.43 ? H27 I9G 701 A 1 HETATM 69 H H28 I9G . . . B 2 13.981 -83.587 -18.604 0.93 147.56 ? H28 I9G 701 A 1 HETATM 70 H H29 I9G . . . B 2 13.442 -83.119 -20.014 0.93 147.56 ? H29 I9G 701 A 1 HETATM 71 H H31 I9G . . . B 2 24.096 -82.637 -8.358 0.93 77.06 ? H31 I9G 701 A 1 HETATM 72 H H32 I9G . . . B 2 22.032 -80.087 -7.933 0.93 77.23 ? H32 I9G 701 A 1 HETATM 73 H H33 I9G . . . B 2 25.828 -81.36 -9.447 0.93 71.08 ? H33 I9G 701 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 73 #