data_8GEO # _model_server_result.job_id 3fRPiox9iziTx31fCCbkug _model_server_result.datetime_utc '2024-10-10 21:27:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8geo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8GEO # _exptl.entry_id 8GEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 502.944 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-chloro-11-(1-beta-D-glucopyranuronosylpiperidin-4-ylidene)-3-hydroxy-6,11-dihydro-5H-benzo[5,6]cyclohepta[1,2-b]pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GEO _cell.length_a 180.066 _cell.length_b 180.066 _cell.length_c 133.826 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 90.033 155.94173 0 3 'crystal symmetry operation' 7_554 y,x,-z-2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -89.217333 4 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-2/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 90.033 155.94173 -89.217333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H27 Cl N2 O7' _chem_comp.formula_weight 502.944 _chem_comp.id ZBL _chem_comp.mon_nstd_flag . _chem_comp.name 8-chloro-11-(1-beta-D-glucopyranuronosylpiperidin-4-ylidene)-3-hydroxy-6,11-dihydro-5H-benzo[5,6]cyclohepta[1,2-b]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C11 ZBL sing 389 n n C15 C14 ZBL sing 390 n n C15 C16 ZBL sing 391 n n C12 C11 ZBL doub 392 n y C12 C13 ZBL sing 393 n y C14 C13 ZBL sing 394 n n C11 C10 ZBL sing 395 n y C13 C8 ZBL doub 396 n y C17 C16 ZBL doub 397 n y C17 C18 ZBL sing 398 n y C16 C20 ZBL sing 399 n y C10 C9 ZBL doub 400 n y O4 C18 ZBL sing 401 n n C8 C9 ZBL sing 402 n y C8 C7 ZBL sing 403 n n C18 C19 ZBL doub 404 n y C20 C7 ZBL sing 405 n n C20 N2 ZBL doub 406 n y O2 C1 ZBL doub 407 n n C7 C6 ZBL doub 408 n n C5 C6 ZBL sing 409 n n C5 C4 ZBL sing 410 n n C19 N2 ZBL sing 411 n y C6 C21 ZBL sing 412 n n O1 C1 ZBL sing 413 n n C1 C2 ZBL sing 414 n n C4 N1 ZBL sing 415 n n C2 O3 ZBL sing 416 n n C2 C25 ZBL sing 417 n n N1 C22 ZBL sing 418 n n N1 C3 ZBL sing 419 n n C21 C22 ZBL sing 420 n n O3 C3 ZBL sing 421 n n C3 C23 ZBL sing 422 n n C25 O7 ZBL sing 423 n n C25 C24 ZBL sing 424 n n C23 C24 ZBL sing 425 n n C23 O5 ZBL sing 426 n n C24 O6 ZBL sing 427 n n C4 H1 ZBL sing 428 n n C4 H2 ZBL sing 429 n n C14 H3 ZBL sing 430 n n C14 H11 ZBL sing 431 n n C5 H4 ZBL sing 432 n n C5 H5 ZBL sing 433 n n C9 H8 ZBL sing 434 n n C10 H9 ZBL sing 435 n n C12 H10 ZBL sing 436 n n C3 H14 ZBL sing 437 n n C15 H15 ZBL sing 438 n n C15 H12 ZBL sing 439 n n C17 H16 ZBL sing 440 n n C19 H17 ZBL sing 441 n n C2 H18 ZBL sing 442 n n C21 H19 ZBL sing 443 n n C21 H20 ZBL sing 444 n n C22 H21 ZBL sing 445 n n C22 H22 ZBL sing 446 n n C23 H23 ZBL sing 447 n n C24 H24 ZBL sing 448 n n C25 H25 ZBL sing 449 n n O1 H26 ZBL sing 450 n n O4 H27 ZBL sing 451 n n O5 H28 ZBL sing 452 n n O6 H29 ZBL sing 453 n n O7 H30 ZBL sing 454 n n # _atom_sites.entry_id 8GEO _atom_sites.fract_transf_matrix[1][1] 0.005554 _atom_sites.fract_transf_matrix[1][2] 0.003206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZBL A 1 701 703 ZBL DRG . C 3 GOL A 1 702 705 GOL GOL . D 3 GOL A 1 703 706 GOL GOL . E 4 HOH A 1 801 3 HOH HOH . E 4 HOH A 2 802 2 HOH HOH . E 4 HOH A 3 803 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 ZBL . . . B 2 60.394 58.035 -34.696 0.82 81.64 ? C4 ZBL 701 A 1 HETATM 2 C C14 ZBL . . . B 2 63.507 58.396 -38.738 0.82 99.96 ? C14 ZBL 701 A 1 HETATM 3 C C5 ZBL . . . B 2 61.381 58.325 -35.812 0.82 76.92 ? C5 ZBL 701 A 1 HETATM 4 C C6 ZBL . . . B 2 62.745 58.517 -35.222 0.82 92.08 ? C6 ZBL 701 A 1 HETATM 5 C C11 ZBL . . . B 2 65.364 55.171 -38.032 0.82 101.35 ? C11 ZBL 701 A 1 HETATM 6 C C7 ZBL . . . B 2 63.87 58.543 -35.945 0.82 98.11 ? C7 ZBL 701 A 1 HETATM 7 C C8 ZBL . . . B 2 64.379 57.342 -36.643 0.82 100.24 ? C8 ZBL 701 A 1 HETATM 8 C C9 ZBL . . . B 2 65.052 56.327 -35.968 0.82 85.68 ? C9 ZBL 701 A 1 HETATM 9 C C10 ZBL . . . B 2 65.537 55.233 -36.662 0.82 104.01 ? C10 ZBL 701 A 1 HETATM 10 C C12 ZBL . . . B 2 64.718 56.172 -38.717 0.82 79.84 ? C12 ZBL 701 A 1 HETATM 11 C C13 ZBL . . . B 2 64.237 57.282 -38.026 0.82 102.46 ? C13 ZBL 701 A 1 HETATM 12 N N1 ZBL . . . B 2 60.281 59.182 -33.795 0.82 72.53 ? N1 ZBL 701 A 1 HETATM 13 N N2 ZBL . . . B 2 65.506 60.116 -35.145 0.82 99.68 ? N2 ZBL 701 A 1 HETATM 14 C C3 ZBL . . . B 2 59.2 59.055 -32.805 0.82 55.74 ? C3 ZBL 701 A 1 HETATM 15 C C1 ZBL . . . B 2 58.86 61.077 -35.08 0.82 64.57 ? C1 ZBL 701 A 1 HETATM 16 C C15 ZBL . . . B 2 64.148 59.81 -38.692 0.82 104.36 ? C15 ZBL 701 A 1 HETATM 17 C C16 ZBL . . . B 2 64.938 60.259 -37.479 0.82 100.5 ? C16 ZBL 701 A 1 HETATM 18 C C17 ZBL . . . B 2 65.834 61.315 -37.605 0.82 97.76 ? C17 ZBL 701 A 1 HETATM 19 C C18 ZBL . . . B 2 66.556 61.749 -36.509 0.82 101.72 ? C18 ZBL 701 A 1 HETATM 20 C C19 ZBL . . . B 2 66.366 61.126 -35.295 0.82 94.44 ? C19 ZBL 701 A 1 HETATM 21 C C2 ZBL . . . B 2 58.091 60.979 -33.773 0.82 60.74 ? C2 ZBL 701 A 1 HETATM 22 C C20 ZBL . . . B 2 64.78 59.693 -36.204 0.82 93.36 ? C20 ZBL 701 A 1 HETATM 23 C C21 ZBL . . . B 2 62.705 58.662 -33.727 0.82 88.82 ? C21 ZBL 701 A 1 HETATM 24 C C22 ZBL . . . B 2 61.596 59.615 -33.305 0.82 68.84 ? C22 ZBL 701 A 1 HETATM 25 C C23 ZBL . . . B 2 59.478 59.733 -31.466 0.82 61.38 ? C23 ZBL 701 A 1 HETATM 26 C C24 ZBL . . . B 2 58.713 61.034 -31.353 0.82 56.32 ? C24 ZBL 701 A 1 HETATM 27 C C25 ZBL . . . B 2 58.751 61.805 -32.663 0.82 54.99 ? C25 ZBL 701 A 1 HETATM 28 O O1 ZBL . . . B 2 59.727 61.9 -35.201 0.82 80.36 ? O1 ZBL 701 A 1 HETATM 29 O O2 ZBL . . . B 2 58.588 60.335 -35.983 0.82 70.63 ? O2 ZBL 701 A 1 HETATM 30 O O3 ZBL . . . B 2 58.014 59.603 -33.387 0.82 77.8 ? O3 ZBL 701 A 1 HETATM 31 O O4 ZBL . . . B 2 67.44 62.779 -36.634 0.82 116.63 ? O4 ZBL 701 A 1 HETATM 32 O O5 ZBL . . . B 2 59.085 58.864 -30.405 0.82 53.17 ? O5 ZBL 701 A 1 HETATM 33 O O6 ZBL . . . B 2 59.276 61.823 -30.309 0.82 78.83 ? O6 ZBL 701 A 1 HETATM 34 O O7 ZBL . . . B 2 58.033 63.031 -32.513 0.82 63.9 ? O7 ZBL 701 A 1 HETATM 35 CL CL1 ZBL . . . B 2 65.979 53.794 -38.904 0.82 122.77 ? CL1 ZBL 701 A 1 HETATM 36 H H11 ZBL . . . B 2 62.494 58.461 -38.345 0.82 131.51 ? H11 ZBL 701 A 1 HETATM 37 H H12 ZBL . . . B 2 64.774 59.938 -39.573 0.82 136.79 ? H12 ZBL 701 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #