data_8GEO # _model_server_result.job_id hCVEXWr6iXPDuRY7hB3DfA _model_server_result.datetime_utc '2024-10-10 21:28:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8geo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 8GEO # _exptl.entry_id 8GEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GEO _cell.length_a 180.066 _cell.length_b 180.066 _cell.length_c 133.826 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 90.033 155.94173 0 3 'crystal symmetry operation' 7_554 y,x,-z-2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -89.217333 4 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-2/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 90.033 155.94173 -89.217333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8GEO _atom_sites.fract_transf_matrix[1][1] 0.005554 _atom_sites.fract_transf_matrix[1][2] 0.003206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZBL A 1 701 703 ZBL DRG . C 3 GOL A 1 702 705 GOL GOL . D 3 GOL A 1 703 706 GOL GOL . E 4 HOH A 1 801 3 HOH HOH . E 4 HOH A 2 802 2 HOH HOH . E 4 HOH A 3 803 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 58.429 76.701 -30.388 1 69.83 ? C1 GOL 703 A 1 HETATM 2 O O1 GOL . . . D 3 59.112 77.418 -29.401 1 69.83 ? O1 GOL 703 A 1 HETATM 3 C C2 GOL . . . D 3 59.437 75.827 -31.171 1 69.83 ? C2 GOL 703 A 1 HETATM 4 O O2 GOL . . . D 3 58.85 75.281 -32.3 1 69.83 ? O2 GOL 703 A 1 HETATM 5 C C3 GOL . . . D 3 60.588 76.762 -31.466 1 69.83 ? C3 GOL 703 A 1 HETATM 6 O O3 GOL . . . D 3 61.177 76.278 -32.625 1 69.83 ? O3 GOL 703 A 1 HETATM 7 H H11 GOL . . . D 3 57.973 77.285 -31.015 1 28.47 ? H11 GOL 703 A 1 HETATM 8 H H12 GOL . . . D 3 57.744 76.126 -30.014 1 28.47 ? H12 GOL 703 A 1 HETATM 9 H HO1 GOL . . . D 3 59.32 76.864 -28.807 1 28.47 ? HO1 GOL 703 A 1 HETATM 10 H H2 GOL . . . D 3 59.748 75.068 -30.652 1 28.47 ? H2 GOL 703 A 1 HETATM 11 H HO2 GOL . . . D 3 58.336 75.863 -32.63 1 28.47 ? HO2 GOL 703 A 1 HETATM 12 H H31 GOL . . . D 3 61.187 76.782 -30.704 1 28.47 ? H31 GOL 703 A 1 HETATM 13 H H32 GOL . . . D 3 60.25 77.668 -31.55 1 28.47 ? H32 GOL 703 A 1 HETATM 14 H HO3 GOL . . . D 3 60.936 75.452 -32.7 1 28.47 ? HO3 GOL 703 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #