data_8GEQ
#
_model_server_result.job_id            xwRnXJz8GK-x3U_nlOt9mQ 
_model_server_result.datetime_utc      '2024-10-20 07:32:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8geq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    8GEQ 
#
_exptl.entry_id    8GEQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              552.02 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-amino-5-chloro-2-{4-(1-beta-D-glucopyranuronosylpiperidin-4-yl)-5-methyl-2-[(propan-2-yl)oxy]anilino}pyrimidine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8GEQ 
_cell.length_a            179.728 
_cell.length_b            179.728 
_cell.length_c            134.542 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GEQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    'P 64 2 (x,y,z+1/6)' 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.864 -155.649014 0 
3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.847333 
4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.864 -155.649014 -44.847333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H34 Cl N5 O7' 
_chem_comp.formula_weight    552.02 
_chem_comp.id                ZFW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-amino-5-chloro-2-{4-(1-beta-D-glucopyranuronosylpiperidin-4-yl)-5-methyl-2-[(propan-2-yl)oxy]anilino}pyrimidine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 N01 ZFW sing 376 n n 
N03 C02 ZFW doub 377 n y 
C04 N03 ZFW sing 378 n y 
C06 N05 ZFW sing 379 n n 
C07 C06 ZFW doub 380 n y 
C08 C07 ZFW sing 381 n y 
C09 C08 ZFW sing 382 n n 
C10 C08 ZFW doub 383 n y 
C12 C11 ZFW sing 384 n n 
C13 C12 ZFW sing 385 n n 
N14 C13 ZFW sing 386 n n 
C16 C15 ZFW sing 387 n n 
C15 N14 ZFW sing 388 n n 
C17 N14 ZFW sing 389 n n 
O18 C17 ZFW sing 390 n n 
C19 O18 ZFW sing 391 n n 
O23 C22 ZFW sing 392 n n 
C22 C21 ZFW sing 393 n n 
O24 C21 ZFW sing 394 n n 
C21 C20 ZFW sing 395 n n 
O25 C20 ZFW sing 396 n n 
C20 C19 ZFW sing 397 n n 
C26 C19 ZFW sing 398 n n 
O27 C26 ZFW doub 399 n n 
O28 C26 ZFW sing 400 n n 
C11 C10 ZFW sing 401 n n 
C29 C10 ZFW sing 402 n y 
C30 C29 ZFW doub 403 n y 
O31 C30 ZFW sing 404 n n 
C32 O31 ZFW sing 405 n n 
C33 C32 ZFW sing 406 n n 
C34 C32 ZFW sing 407 n n 
N05 C04 ZFW sing 408 n n 
N35 C04 ZFW doub 409 n y 
C36 N35 ZFW sing 410 n y 
C37 C36 ZFW doub 411 n y 
CL38 C37 ZFW sing 412 n n 
C02 C37 ZFW sing 413 n y 
C06 C30 ZFW sing 414 n y 
C11 C16 ZFW sing 415 n n 
C17 C22 ZFW sing 416 n n 
C07 H071 ZFW sing 417 n n 
C09 H092 ZFW sing 418 n n 
C09 H091 ZFW sing 419 n n 
C09 H093 ZFW sing 420 n n 
C11 H111 ZFW sing 421 n n 
C12 H122 ZFW sing 422 n n 
C12 H121 ZFW sing 423 n n 
C13 H131 ZFW sing 424 n n 
C13 H132 ZFW sing 425 n n 
C15 H151 ZFW sing 426 n n 
C15 H152 ZFW sing 427 n n 
C16 H162 ZFW sing 428 n n 
C16 H161 ZFW sing 429 n n 
C17 H171 ZFW sing 430 n n 
C19 H191 ZFW sing 431 n n 
C20 H201 ZFW sing 432 n n 
C21 H211 ZFW sing 433 n n 
C22 H221 ZFW sing 434 n n 
C29 H291 ZFW sing 435 n n 
C32 H321 ZFW sing 436 n n 
C33 H333 ZFW sing 437 n n 
C33 H331 ZFW sing 438 n n 
C33 H332 ZFW sing 439 n n 
C34 H342 ZFW sing 440 n n 
C34 H341 ZFW sing 441 n n 
C34 H343 ZFW sing 442 n n 
C36 H361 ZFW sing 443 n n 
N01 H011 ZFW sing 444 n n 
N01 H012 ZFW sing 445 n n 
N05 H051 ZFW sing 446 n n 
O23 H231 ZFW sing 447 n n 
O24 H241 ZFW sing 448 n n 
O25 H251 ZFW sing 449 n n 
O28 H2 ZFW sing 450 n n 
#
_atom_sites.entry_id                     8GEQ 
_atom_sites.fract_transf_matrix[1][1]    0.005564 
_atom_sites.fract_transf_matrix[1][2]    0.003212 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007433 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZFW A 1 701 701 ZFW CRG . 
C 3 HOH A 1 801 29 HOH HOH . 
C 3 HOH A 2 802 6 HOH HOH . 
C 3 HOH A 3 803 2 HOH HOH . 
C 3 HOH A 4 804 3 HOH HOH . 
C 3 HOH A 5 805 23 HOH HOH . 
C 3 HOH A 6 806 1 HOH HOH . 
C 3 HOH A 7 807 5 HOH HOH . 
C 3 HOH A 8 808 27 HOH HOH . 
C 3 HOH A 9 809 26 HOH HOH . 
C 3 HOH A 10 810 28 HOH HOH . 
C 3 HOH A 11 811 7 HOH HOH . 
C 3 HOH A 12 812 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 ZFW . . . B 2 14.405 -87.483 -19.82 1 121.98 ? C02 ZFW 701 A 1 
HETATM 2 C C04 ZFW . . . B 2 15.279 -86.44 -17.931 1 109.5 ? C04 ZFW 701 A 1 
HETATM 3 C C06 ZFW . . . B 2 16.243 -85.073 -15.972 1 93.83 ? C06 ZFW 701 A 1 
HETATM 4 C C07 ZFW . . . B 2 17.477 -84.86 -16.577 1 93.7 ? C07 ZFW 701 A 1 
HETATM 5 C C08 ZFW . . . B 2 18.573 -84.497 -15.833 1 85.47 ? C08 ZFW 701 A 1 
HETATM 6 C C09 ZFW . . . B 2 19.9 -84.3 -16.702 1 69.68 ? C09 ZFW 701 A 1 
HETATM 7 C C10 ZFW . . . B 2 18.42 -84.149 -14.372 1 90.6 ? C10 ZFW 701 A 1 
HETATM 8 C C11 ZFW . . . B 2 19.824 -83.916 -13.763 1 84.99 ? C11 ZFW 701 A 1 
HETATM 9 C C12 ZFW . . . B 2 19.855 -84.359 -12.318 1 76.48 ? C12 ZFW 701 A 1 
HETATM 10 C C13 ZFW . . . B 2 20.765 -83.32 -11.515 1 75.87 ? C13 ZFW 701 A 1 
HETATM 11 C C15 ZFW . . . B 2 20.075 -81.505 -13.218 1 65.63 ? C15 ZFW 701 A 1 
HETATM 12 C C16 ZFW . . . B 2 19.223 -82.609 -14.019 1 75.91 ? C16 ZFW 701 A 1 
HETATM 13 C C17 ZFW . . . B 2 21.074 -80.748 -11.002 1 64.27 ? C17 ZFW 701 A 1 
HETATM 14 C C19 ZFW . . . B 2 23.589 -80.651 -11.556 1 62.05 ? C19 ZFW 701 A 1 
HETATM 15 C C20 ZFW . . . B 2 23.772 -81.68 -10.424 1 59.79 ? C20 ZFW 701 A 1 
HETATM 16 C C21 ZFW . . . B 2 23.044 -81.14 -9.298 1 49.21 ? C21 ZFW 701 A 1 
HETATM 17 C C22 ZFW . . . B 2 21.592 -81.047 -9.616 1 56.44 ? C22 ZFW 701 A 1 
HETATM 18 C C26 ZFW . . . B 2 24.133 -81.123 -12.892 1 63.09 ? C26 ZFW 701 A 1 
HETATM 19 C C29 ZFW . . . B 2 17.228 -84.56 -13.8 1 87.93 ? C29 ZFW 701 A 1 
HETATM 20 C C30 ZFW . . . B 2 16.124 -84.901 -14.585 1 93.31 ? C30 ZFW 701 A 1 
HETATM 21 C C32 ZFW . . . B 2 14.248 -86.384 -13.908 1 99.28 ? C32 ZFW 701 A 1 
HETATM 22 C C33 ZFW . . . B 2 15.289 -87.477 -14.233 1 92.75 ? C33 ZFW 701 A 1 
HETATM 23 C C34 ZFW . . . B 2 13.591 -86.545 -12.492 1 86.46 ? C34 ZFW 701 A 1 
HETATM 24 C C36 ZFW . . . B 2 16.618 -87.958 -19.062 1 120.25 ? C36 ZFW 701 A 1 
HETATM 25 C C37 ZFW . . . B 2 15.605 -88.19 -19.994 1 126.02 ? C37 ZFW 701 A 1 
HETATM 26 N N01 ZFW . . . B 2 13.269 -87.646 -20.735 1 108.95 ? N01 ZFW 701 A 1 
HETATM 27 N N03 ZFW . . . B 2 14.28 -86.633 -18.795 1 118.09 ? N03 ZFW 701 A 1 
HETATM 28 N N05 ZFW . . . B 2 15.086 -85.474 -16.811 1 98.59 ? N05 ZFW 701 A 1 
HETATM 29 N N14 ZFW . . . B 2 20.446 -81.856 -11.784 1 75.79 ? N14 ZFW 701 A 1 
HETATM 30 N N35 ZFW . . . B 2 16.431 -87.094 -18.059 1 111.13 ? N35 ZFW 701 A 1 
HETATM 31 O O18 ZFW . . . B 2 22.191 -80.123 -11.784 1 69.93 ? O18 ZFW 701 A 1 
HETATM 32 O O23 ZFW . . . B 2 21.217 -80.031 -8.625 1 55.9 ? O23 ZFW 701 A 1 
HETATM 33 O O24 ZFW . . . B 2 23.057 -81.969 -8.099 1 60.78 ? O24 ZFW 701 A 1 
HETATM 34 O O25 ZFW . . . B 2 25.2 -81.721 -10.221 1 59.92 ? O25 ZFW 701 A 1 
HETATM 35 O O27 ZFW . . . B 2 23.409 -81.879 -13.623 1 60.9 ? O27 ZFW 701 A 1 
HETATM 36 O O28 ZFW . . . B 2 25.297 -80.734 -13.266 1 65.79 ? O28 ZFW 701 A 1 
HETATM 37 O O31 ZFW . . . B 2 14.856 -85.102 -13.929 1 100.5 ? O31 ZFW 701 A 1 
HETATM 38 CL CL38 ZFW . . . B 2 15.861 -89.36 -21.339 1 126.68 ? CL38 ZFW 701 A 1 
HETATM 39 H H071 ZFW . . . B 2 17.575 -84.984 -17.655 1 112.46 ? H071 ZFW 701 A 1 
HETATM 40 H H092 ZFW . . . B 2 19.629 -84.033 -17.725 1 83.63 ? H092 ZFW 701 A 1 
HETATM 41 H H091 ZFW . . . B 2 20.472 -85.229 -16.709 1 83.63 ? H091 ZFW 701 A 1 
HETATM 42 H H093 ZFW . . . B 2 20.505 -83.503 -16.267 1 83.63 ? H093 ZFW 701 A 1 
HETATM 43 H H111 ZFW . . . B 2 19.49 -84.655 -14.494 1 102.01 ? H111 ZFW 701 A 1 
HETATM 44 H H122 ZFW . . . B 2 20.28 -85.363 -12.244 1 91.79 ? H122 ZFW 701 A 1 
HETATM 45 H H121 ZFW . . . B 2 18.842 -84.365 -11.907 1 91.79 ? H121 ZFW 701 A 1 
HETATM 46 H H131 ZFW . . . B 2 21.805 -83.498 -11.786 1 91.06 ? H131 ZFW 701 A 1 
HETATM 47 H H132 ZFW . . . B 2 20.634 -83.506 -10.449 1 91.06 ? H132 ZFW 701 A 1 
HETATM 48 H H151 ZFW . . . B 2 19.489 -80.58 -13.196 1 78.77 ? H151 ZFW 701 A 1 
HETATM 49 H H152 ZFW . . . B 2 21.003 -81.33 -13.772 1 78.77 ? H152 ZFW 701 A 1 
HETATM 50 H H162 ZFW . . . B 2 19.246 -82.392 -15.094 1 91.12 ? H162 ZFW 701 A 1 
HETATM 51 H H161 ZFW . . . B 2 18.183 -82.603 -13.671 1 91.12 ? H161 ZFW 701 A 1 
HETATM 52 H H171 ZFW . . . B 2 20.201 -80.111 -10.864 1 77.15 ? H171 ZFW 701 A 1 
HETATM 53 H H191 ZFW . . . B 2 24.204 -79.825 -11.201 1 74.48 ? H191 ZFW 701 A 1 
HETATM 54 H H201 ZFW . . . B 2 23.438 -82.7 -10.604 1 71.77 ? H201 ZFW 701 A 1 
HETATM 55 H H211 ZFW . . . B 2 23.55 -80.201 -9.081 1 59.07 ? H211 ZFW 701 A 1 
HETATM 56 H H221 ZFW . . . B 2 21.123 -82.027 -9.551 1 67.75 ? H221 ZFW 701 A 1 
HETATM 57 H H291 ZFW . . . B 2 17.148 -84.62 -12.706 1 105.54 ? H291 ZFW 701 A 1 
HETATM 58 H H321 ZFW . . . B 2 13.49 -86.429 -14.688 1 119.16 ? H321 ZFW 701 A 1 
HETATM 59 H H333 ZFW . . . B 2 16.242 -87.218 -13.778 1 111.32 ? H333 ZFW 701 A 1 
HETATM 60 H H331 ZFW . . . B 2 15.411 -87.552 -15.312 1 111.32 ? H331 ZFW 701 A 1 
HETATM 61 H H332 ZFW . . . B 2 14.947 -88.432 -13.84 1 111.32 ? H332 ZFW 701 A 1 
HETATM 62 H H342 ZFW . . . B 2 13.92 -85.733 -11.844 1 103.77 ? H342 ZFW 701 A 1 
HETATM 63 H H341 ZFW . . . B 2 13.892 -87.499 -12.059 1 103.77 ? H341 ZFW 701 A 1 
HETATM 64 H H343 ZFW . . . B 2 12.506 -86.516 -12.589 1 103.77 ? H343 ZFW 701 A 1 
HETATM 65 H H361 ZFW . . . B 2 17.567 -88.484 -19.152 1 144.32 ? H361 ZFW 701 A 1 
HETATM 66 H H011 ZFW . . . B 2 12.452 -87.071 -20.615 1 130.76 ? H011 ZFW 701 A 1 
HETATM 67 H H012 ZFW . . . B 2 13.307 -88.319 -21.476 1 130.76 ? H012 ZFW 701 A 1 
HETATM 68 H H051 ZFW . . . B 2 14.173 -85.095 -16.624 1 118.33 ? H051 ZFW 701 A 1 
HETATM 69 H H231 ZFW . . . B 2 21.74 -80.122 -7.838 1 67.1 ? H231 ZFW 701 A 1 
HETATM 70 H H241 ZFW . . . B 2 23.918 -81.91 -7.715 1 72.96 ? H241 ZFW 701 A 1 
HETATM 71 H H251 ZFW . . . B 2 25.499 -80.987 -9.731 1 71.92 ? H251 ZFW 701 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           71 
#