data_8GET # _model_server_result.job_id ca7MmAqrAEA1b03whFzP9Q _model_server_result.datetime_utc '2024-11-24 23:54:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8get # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1604}' # _entry.id 8GET # _exptl.entry_id 8GET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GET _cell.length_a 100.466 _cell.length_b 146.29 _cell.length_c 281.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GET _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,M,N,O,P 1 1 B,H,I,J,K,L 2 1 D,Q,R 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 0 -73.145 140.716 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N ? 4 P N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 106 n n N1 C10 FMN doub 107 n n C2 O2 FMN doub 108 n n C2 N3 FMN sing 109 n n N3 C4 FMN sing 110 n n N3 HN3 FMN sing 111 n n C4 O4 FMN doub 112 n n C4 C4A FMN sing 113 n n C4A N5 FMN doub 114 n n C4A C10 FMN sing 115 n n N5 C5A FMN sing 116 n n C5A C6 FMN doub 117 n y C5A C9A FMN sing 118 n y C6 C7 FMN sing 119 n y C6 H6 FMN sing 120 n n C7 C7M FMN sing 121 n n C7 C8 FMN doub 122 n y C7M HM71 FMN sing 123 n n C7M HM72 FMN sing 124 n n C7M HM73 FMN sing 125 n n C8 C8M FMN sing 126 n n C8 C9 FMN sing 127 n y C8M HM81 FMN sing 128 n n C8M HM82 FMN sing 129 n n C8M HM83 FMN sing 130 n n C9 C9A FMN doub 131 n y C9 H9 FMN sing 132 n n C9A N10 FMN sing 133 n n N10 C10 FMN sing 134 n n N10 C1' FMN sing 135 n n C1' C2' FMN sing 136 n n C1' "H1'1" FMN sing 137 n n C1' "H1'2" FMN sing 138 n n C2' O2' FMN sing 139 n n C2' C3' FMN sing 140 n n C2' H2' FMN sing 141 n n O2' HO2' FMN sing 142 n n C3' O3' FMN sing 143 n n C3' C4' FMN sing 144 n n C3' H3' FMN sing 145 n n O3' HO3' FMN sing 146 n n C4' O4' FMN sing 147 n n C4' C5' FMN sing 148 n n C4' H4' FMN sing 149 n n O4' HO4' FMN sing 150 n n C5' O5' FMN sing 151 n n C5' "H5'1" FMN sing 152 n n C5' "H5'2" FMN sing 153 n n O5' P FMN sing 154 n n P O1P FMN doub 155 n n P O2P FMN sing 156 n n P O3P FMN sing 157 n n O2P HOP2 FMN sing 158 n n O3P HOP3 FMN sing 159 n n # _atom_sites.entry_id 8GET _atom_sites.fract_transf_matrix[1][1] 0.009954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 801 801 GOL GOL . F 3 BDP A 1 802 802 BDP GLC . G 4 FMN A 1 803 803 FMN FMN . H 2 GOL B 1 801 801 GOL GOL . I 2 GOL B 1 802 802 GOL GOL . J 2 GOL B 1 803 803 GOL GOL . K 3 BDP B 1 804 804 BDP GLC . L 4 FMN B 1 805 805 FMN FMN . M 5 ZG5 C 1 1601 801 ZG5 NOR . N 2 GOL C 1 1602 802 GOL GOL . O 2 GOL C 1 1603 803 GOL GOL . P 4 FMN C 1 1604 804 FMN FMN . Q 3 BDP D 1 801 801 BDP GLC . R 2 GOL D 1 802 802 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . P 4 -60.98 -60.156 19.532 1 85.33 ? N1 FMN 1604 C 1 HETATM 2 C C2 FMN . . . P 4 -61.305 -59.68 20.787 1 94.06 ? C2 FMN 1604 C 1 HETATM 3 O O2 FMN . . . P 4 -61.947 -60.384 21.566 1 104.6 ? O2 FMN 1604 C 1 HETATM 4 N N3 FMN . . . P 4 -60.91 -58.415 21.171 1 93.05 ? N3 FMN 1604 C 1 HETATM 5 C C4 FMN . . . P 4 -60.191 -57.622 20.301 1 90.95 ? C4 FMN 1604 C 1 HETATM 6 O O4 FMN . . . P 4 -59.838 -56.493 20.643 1 97.96 ? O4 FMN 1604 C 1 HETATM 7 C C4A FMN . . . P 4 -59.864 -58.102 19.037 1 89.28 ? C4A FMN 1604 C 1 HETATM 8 N N5 FMN . . . P 4 -59.145 -57.308 18.174 1 86.22 ? N5 FMN 1604 C 1 HETATM 9 C C5A FMN . . . P 4 -58.817 -57.775 16.921 1 81.1 ? C5A FMN 1604 C 1 HETATM 10 C C6 FMN . . . P 4 -58.092 -56.958 16.064 1 78.9 ? C6 FMN 1604 C 1 HETATM 11 C C7 FMN . . . P 4 -57.752 -57.404 14.793 1 78.92 ? C7 FMN 1604 C 1 HETATM 12 C C7M FMN . . . P 4 -56.961 -56.511 13.886 1 84.03 ? C7M FMN 1604 C 1 HETATM 13 C C8 FMN . . . P 4 -58.131 -58.677 14.387 1 83.07 ? C8 FMN 1604 C 1 HETATM 14 C C8M FMN . . . P 4 -57.772 -59.177 13.018 1 87.51 ? C8M FMN 1604 C 1 HETATM 15 C C9 FMN . . . P 4 -58.861 -59.488 15.247 1 78.11 ? C9 FMN 1604 C 1 HETATM 16 C C9A FMN . . . P 4 -59.207 -59.047 16.52 1 83.49 ? C9A FMN 1604 C 1 HETATM 17 N N10 FMN . . . P 4 -59.927 -59.858 17.386 1 88.44 ? N10 FMN 1604 C 1 HETATM 18 C C10 FMN . . . P 4 -60.261 -59.377 18.645 1 87.97 ? C10 FMN 1604 C 1 HETATM 19 C C1' FMN . . . P 4 -60.365 -61.241 16.971 1 91.84 ? C1' FMN 1604 C 1 HETATM 20 C C2' FMN . . . P 4 -59.234 -62.271 17.057 1 90.04 ? C2' FMN 1604 C 1 HETATM 21 O O2' FMN . . . P 4 -58.317 -62.061 16.009 1 93.85 ? O2' FMN 1604 C 1 HETATM 22 C C3' FMN . . . P 4 -59.777 -63.699 16.946 1 90.09 ? C3' FMN 1604 C 1 HETATM 23 O O3' FMN . . . P 4 -61.092 -63.611 16.438 1 91.94 ? O3' FMN 1604 C 1 HETATM 24 C C4' FMN . . . P 4 -59.712 -64.488 18.253 1 99.83 ? C4' FMN 1604 C 1 HETATM 25 O O4' FMN . . . P 4 -60.177 -63.703 19.321 1 95.45 ? O4' FMN 1604 C 1 HETATM 26 C C5' FMN . . . P 4 -58.255 -64.888 18.462 1 102.51 ? C5' FMN 1604 C 1 HETATM 27 O O5' FMN . . . P 4 -58.135 -66.221 18.904 1 99.4 ? O5' FMN 1604 C 1 HETATM 28 P P FMN . . . P 4 -56.722 -66.715 19.495 1 123.35 ? P FMN 1604 C 1 HETATM 29 O O1P FMN . . . P 4 -56.943 -67.226 20.899 1 97.12 ? O1P FMN 1604 C 1 HETATM 30 O O2P FMN . . . P 4 -55.756 -65.551 19.529 1 103.8 ? O2P FMN 1604 C 1 HETATM 31 O O3P FMN . . . P 4 -56.159 -67.812 18.624 1 100.21 ? O3P FMN 1604 C 1 HETATM 32 H HN3 FMN . . . P 4 -61.156 -58.058 22.116 1 96.6 ? HN3 FMN 1604 C 1 HETATM 33 H H6 FMN . . . P 4 -57.788 -55.963 16.389 1 79.62 ? H6 FMN 1604 C 1 HETATM 34 H HM71 FMN . . . P 4 -56.1 -57.056 13.5 1 85.78 ? HM71 FMN 1604 C 1 HETATM 35 H HM72 FMN . . . P 4 -56.618 -55.639 14.443 1 85.78 ? HM72 FMN 1604 C 1 HETATM 36 H HM73 FMN . . . P 4 -57.589 -56.188 13.056 1 85.78 ? HM73 FMN 1604 C 1 HETATM 37 H HM81 FMN . . . P 4 -58.129 -60.2 12.9 1 89.95 ? HM81 FMN 1604 C 1 HETATM 38 H HM82 FMN . . . P 4 -56.689 -59.154 12.895 1 89.95 ? HM82 FMN 1604 C 1 HETATM 39 H HM83 FMN . . . P 4 -58.237 -58.541 12.265 1 89.95 ? HM83 FMN 1604 C 1 HETATM 40 H H9 FMN . . . P 4 -59.166 -60.482 14.92 1 78.68 ? H9 FMN 1604 C 1 HETATM 41 H "H1'1" FMN . . . P 4 -60.734 -61.204 15.946 1 95.16 ? "H1'1" FMN 1604 C 1 HETATM 42 H "H1'2" FMN . . . P 4 -61.187 -61.561 17.611 1 95.16 ? "H1'2" FMN 1604 C 1 HETATM 43 H H2' FMN . . . P 4 -58.741 -62.146 18.021 1 92.99 ? H2' FMN 1604 C 1 HETATM 44 H HO2' FMN . . . P 4 -58.517 -62.675 15.272 1 97.56 ? HO2' FMN 1604 C 1 HETATM 45 H H3' FMN . . . P 4 -59.145 -64.27 16.265 1 93.05 ? H3' FMN 1604 C 1 HETATM 46 H HO3' FMN . . . P 4 -61.201 -64.246 15.7 1 95.27 ? HO3' FMN 1604 C 1 HETATM 47 H H4' FMN . . . P 4 -60.35 -65.371 18.211 1 104.74 ? H4' FMN 1604 C 1 HETATM 48 H HO4' FMN . . . P 4 -59.427 -63.474 19.908 1 99.48 ? HO4' FMN 1604 C 1 HETATM 49 H "H5'1" FMN . . . P 4 -57.801 -64.224 19.198 1 107.95 ? "H5'1" FMN 1604 C 1 HETATM 50 H "H5'2" FMN . . . P 4 -57.711 -64.771 17.525 1 107.95 ? "H5'2" FMN 1604 C 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 1057 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #